Non-Coding RNA Search

Ss1.1-Utr1-UTR01D070096.5

Sequence:


               
               CCAGCTGCTCCCCCTCACCCCTTTTGCCATCCTTCCCCCCCCTCACTTTTGCCTTCCTCC
TCCCCCACGGCCCCGCACCCCAGCCCACTTCTGCCTGTTTTAAATGAGTTTCTCAGTTCT
TCCAGTCAGACCAGGTCTTGCTGGTGTGTCAGGGACAGGGTGTGGGAAGAGGGGCCCAAA
TGTAACTCTAGTGCCACCCCCCCAAACTACAAACACCACTCTCTAAGGGCAAATGAATGA
GAGCAGTCCTGTCAGGGAAGGAGACATTTTAGTGTTCAATGGGCTGCTTGCTAGAATTTA
AAAAAAAAAAAACAATTTACAATCTTATTTAAGTTCCACCAATGCCTCCCTCCCTCCTTC
CTCTCCCACCCCTTCCCATGCCCCTCTGCCCCAAATCCATTTTAACAAAGCTGGGAAGCA
GACTGACTTTGTAAAGGAAGAAGCTGGGGTTCCAACCTCTTCCCCAAGCTGCTAATCCCA
CCCCCCTGCTCCCCTGTCAAGCCTGGACCGGTCTCAGGCCCTTTAGGAAGCCCCTTGTAC
CCCAACAGACCTGCTTCACCCTTGGGCTTCGGGACCCAGACAAAGCAGCTGCCCCTCTCC
CTGCCAAAGAGGAGTTGTCCCTGAAAAGATAGAGGGGGAGCCCCAAGCCCAGGGTCTTTC
CTCTCAGTAACATTTCCCCAAACTCCTTACTTTTATTCTCAGCTAGATGTTACTGTCCAG
CCTCCTTTCAGTTAGGAAGGCAACCCCCCCCGCCCCCCCGCAATCCCCCTGATGGTCCCT
GGTTCAAGGCCGGGATTGCTGGGGAGGGACTGCCTGTTTTTTTCACCCAGCAGCCTCCGC
CCCCTCCCCCATCCTGGGCACTCTTCCTCTGCTTAGCTGTCAGCTGTCAATCACCCGTTC
TCAACCCCCCCCATTTGTGGGTTTTTTTTTTTTCCTCTTAATAGAAAAGTCGAGTGCCAC
CCCATTCATCCCCATGTTTGTCTCATAATTTCTCCCCATCCCAGGAGGAGTTCTCAGGCC
TGGGGTGGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCTGCTCCCCCTCACCCCTTTTGCCATCCTTCCCCCCCCTCACTTTTGCCTTCCTCC
TCCCCCACGGCCCCGCACCCCAGCCCACTTCTGCCTGTTTTAAATGAGTTTCTCAGTTCT
TCCAGTCAGACCAGGTCTTGCTGGTGTGTCAGGGACAGGGTGTGGGAAGAGGGGCCCAAA
TGTAACTCTAGTGCCACCCCCCCAAACTACAAACACCACTCTCTAAGGGCAAATGAATGA
GAGCAGTCCTGTCAGGGAAGGAGACATTTTAGTGTTCAATGGGCTGCTTGCTAGAATTTA
AAAAAAAAAAAACAATTTACAATCTTATTTAAGTTCCACCAATGCCTCCCTCCCTCCTTC
CTCTCCCACCCCTTCCCATGCCCCTCTGCCCCAAATCCATTTTAACAAAGCTGGGAAGCA
GACTGACTTTGTAAAGGAAGAAGCTGGGGTTCCAACCTCTTCCCCAAGCTGCTAATCCCA
CCCCCCTGCTCCCCTGTCAAGCCTGGACCGGTCTCAGGCCCTTTAGGAAGCCCCTTGTAC
CCCAACAGACCTGCTTCACCCTTGGGCTTCGGGACCCAGACAAAGCAGCTGCCCCTCTCC
CTGCCAAAGAGGAGTTGTCCCTGAAAAGATAGAGGGGGAGCCCCAAGCCCAGGGTCTTTC
CTCTCAGTAACATTTCCCCAAACTCCTTACTTTTATTCTCAGCTAGATGTTACTGTCCAG
CCTCCTTTCAGTTAGGAAGGCAACCCCCCCCGCCCCCCCGCAATCCCCCTGATGGTCCCT
GGTTCAAGGCCGGGATTGCTGGGGAGGGACTGCCTGTTTTTTTCACCCAGCAGCCTCCGC
CCCCTCCCCCATCCTGGGCACTCTTCCTCTGCTTAGCTGTCAGCTGTCAATCACCCGTTC
TCAACCCCCCCCATTTGTGGGTTTTTTTTTTTTCCTCTTAATAGAAAAGTCGAGTGCCAC
CCCATTCATCCCCATGTTTGTCTCATAATTTCTCCCCATCCCAGGAGGAGTTCTCAGGCC
TGGGGTGGGGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               240-494, gnl|bosTau2|chr7 (7701244-7701514)
               

               
               240-494, gnl|Hg17|chr19 (14064460-14064216)
               

               
               240-494, gnl|Mm7|chr8 (82574527-82574769)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-494, gnl|bosTau2|chr7 (7701244-7701514)
               

               
               240-494, gnl|Hg17|chr19 (14064460-14064216)
               

               
               240-494, gnl|Mm7|chr8 (82574527-82574769)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               ese (0.253004)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ese (0.253004)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	240-494, gnl\|bosTau2\|chr7 (7701244-7701514)
	240-494, gnl\|Hg17\|chr19 (14064460-14064216)
	240-494, gnl\|Mm7\|chr8 (82574527-82574769)

	elu (0.385356)
	ese (0.253004)
	mcp (0.170648)
	hyp (0.142837)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	jej (0.0989218)