Non-Coding RNA Search

Ss1.1-Utr1-UTR01D090087.5

Sequence:


               
               TCGTCGCCGCCATCCTCGGCGCGACTAACCTTACTCGGATCTGCCCGGTAGAATCCACCG
CCATCCGTCACCATGGTGAACTTCACAGTAGACCAGATCCGGGCCATCATGGACAAGAAG
GCTAATATCCGAAACATGTCCGTCATTGCCCACGTGGACCATGGCAAGTCCACTCTGACG
GACTCATTGGTGTGCAAGGCTGGTATCATCGCCTCCGCCCGGGCTGGGGAGACCCGCTTC
ACTGACACCCGGAAGGATGAGCAGGAACGTTGCATCACTATCAAATCAACGGCCATTTCC
CTCTTCTATGAGCTCTCAGAGAATGACTTGAATTTCATCAAGCAGAGCAAAGATGGCTCT
GGCTTCCTCATCAACCTCATTGATTCACCTGGGCACGTGGACTTCTCCTCAGAAGTGACA
GCAGCTCTCCGTGTCACCGATGGTGCCTTGGTGGTGGTGGACTGTGTGTCAGGTGTGTGC
GTGCAGACAGAGACAGTGCTGCGCCAGGCTATTGCTGAGCGCATCAAGCCTGTGCTGATG
ATGAACAAGATGGACCGGGCCCTGCTCGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAG
ACCTTCCAGCGCATTGTGGAGAATGTCAATGTCATCATTTCCACCTATGGGGAGGGCGAG
AGTGGCCCCATGGGCAACATCATGATTGATCCTGTTCTTGGTACTGTTGGCTTTGGGTCT
GGTCTCCACGGTTGGGCCTTCACCCTGAAGCAGTTTGCAGAGATGTACGTTGCCAAGTTT
GCCGCCAAGGGCGAGGGCCAGTTGGGGCCTGCTGAGCGGGCCAAGAAGGTGGAGGACATG
ATGAAAAAGCTATGGGGAGACCGGTACTTTGATCCAGCCAATGGTAAATTCAGCAAGTCA
GCCACCAGCCCTGATGGCAAGAAGCTGCCGAGGACCTTCTGCCAGCTCATCTTGGACCCT
ATCTTCAAGGTGTTTGATGCCATCATGAATTTCAAGAAAGAGGAGACAGCAAAACTGATT
GAAAAACTAGACATCAAATTGGACAGTGAAGATAAGGACAAAGAAGGCAAACCACTGCTG
AAGGCTGTGATGCGCCGCTGGCTGCCCGCCGGGGATGCGCTGCTACAGATGATCACCATC
CACTTGCCCTCCCCCGTGACGGCCCAGAAGTACCGCTGTGAGCTCCTGTATGAGGGGCCT
CCGGACGACGAGGCAGCCATGGGCATTAAAAGCTGTGACCCCAAAGGCCCACTTATGATG
TACATTTCCAAAATGGTGCCGACCTCCGACAAAGGTCGGTTCTATGCCTTCGGCCGGGTC
TTCTCAGGGCTGGTGTCTACCGGTCTGAAGGTCAGGATCATGGGGCCCAACTACACCCCT
GGGAAGAAGGAGGACCTATACCTGAAGCCAATCCAGAGGACAATCCTTATGATGGGCCGC
TACGTGGAGCCCATTGAGGACGTGCCTTGTGGGAACATCGTGGGCTTGGTGGGCGTGGAC
CAGTTCCTGGTGAAGACAGGAACCATCACCACCTTTGAGCACGCCCACAACATGCGAGTG
ATGAAGTTTAGCGTGAGCCCTGTCGTCAGGGTCGCTGTGGAGGCCAAGAACCCGGCTGAC
CTGCCCAAGCTGGTGGAGGGCCTGAAGCGGCTGGCCAAGTCAGATCCCATGGTGCAGTGC
ATCATTGAGGAGTCTGGGGAGCACATCATCGCAGGGGCTGGAGAGCTGCACCTAGAGATC
TGCCTGAAGGACCTGGAGGAGGACCACGCCTGCATTCCTATCAAGAAATCTGACCCAGTT
GTCTCTTACCGTGAGACTGTCAGTGAGGAGTCAAATGTGCTCTGCTTGTCTAAGTCCCCC
AACAAGCACAACAGGCTATACATGAAAGCAAGGCCTTTCCCTGACGGCCTGGCTGAAGAC
ATCGACAAGGGAGAGGTGTCTGCCCGCCAGGAACTCAAGCAGCGGGCCCGCTACCTAGCT
GAGAAGTACGAGTGGGATGTGGCTGAGGCCCGCAAGATCTGGTGCTTTGGCCCTGATGGC
ACTGGCCCCAACATCCTCACTGACATCACCAAGGGTGTGCAGTACCTCAACGAGATCAAG
GACAGCGTGGTGGCTGGCTTCCAGTGGGCCACCAAAGAGGGGGCGCTGTGTGAGGAGAAC
ATGCGGGGTGTGCGATTTGATGTCCACGATGTGACACTGCACGCCGACGCCATCCACCGT
GGTGGTGGCCAGATCATCCCTACTGCACGGCGCTGCCTTTATGCCAGTGTGCTGACTGCC
CAGCCCAGGCTCATGGAGCCCATCTACCTTGTGGAGATCCAGTGTCCAGAACAAGTGGTT
GGTGGCATTTATGGTGTCCTGAACAGGAAGCGGGGCCACGTCTTTGAGGAGTCCCAGGTG
GCTGGTACCCCCATGTTTGTTGTGAAGGCTTACTTGCCTGTCAATGAATCCTTTGGCTTT
ACTGCTGACCTGAGATCCAACACAGGCGGCCAGGCCTTTCCCCAGTGTGTGTTCGACCAC
TGGCAGATCCTGCCCGGGGATCCCTTCGACAACACCAGTCGCCCCAGCCAGGTGGTGGCA
GAGACACGCAAGCGCAAAGGCCTGAAGGAAGGTATTCCGGCCCTGGACAACTTCCTGGAC
AAATTGTAGGCGGCTTCTCAGCAGCCTGCTGCCCAGTGGGACTGGCGCAGCCCCCGCGCC
CAGGGACAGGTGACCACAGCAACAAGCCCCCCACATTCTCCACGACACTTTGAGACTGTC
CAGACTCAGAAATGCTCTGCCTGACAGGTTTCTGGGGCCCACTTCGTGCCATCACTCAAC
ATGAACACTTGATGCCGTTTCTTTCAATATTTATTTGTAGATTTCAGAGGCAACAGAAAT
GCCCTCACAGCAGGGACTTATCTGGCTGTTGGGGGTGAGGGAAGGGATGGGGGACACCCA
ACACTTTGTTTCATAAGAGGAAAATTCATATCCAAAAAAAAAGTTGAAAATAAACGCATT
AAGAGGTTTATTTGGGTAAATGGCCCATAGTGGATTTTCCTCCATAAAGGGGGAGGAAAC
AGGCAGGTAGATGTTCTCTTTGGACAGAAACTAGAAGGCAGGAAATCCTGTGCAGTGTCA
CCATGAGCACCTCCAACTGTATTAGTGCCATTGGAATAATAAATTTGATATGGTGGTGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTCGCCGCCATCCTCGGCGCGACTAACCTTACTCGGATCTGCCCGGTAGAATCCACCG
CCATCCGTCACCATGGTGAACTTCACAGTAGACCAGATCCGGGCCATCATGGACAAGAAG
GCTAATATCCGAAACATGTCCGTCATTGCCCACGTGGACCATGGCAAGTCCACTCTGACG
GACTCATTGGTGTGCAAGGCTGGTATCATCGCCTCCGCCCGGGCTGGGGAGACCCGCTTC
ACTGACACCCGGAAGGATGAGCAGGAACGTTGCATCACTATCAAATCAACGGCCATTTCC
CTCTTCTATGAGCTCTCAGAGAATGACTTGAATTTCATCAAGCAGAGCAAAGATGGCTCT
GGCTTCCTCATCAACCTCATTGATTCACCTGGGCACGTGGACTTCTCCTCAGAAGTGACA
GCAGCTCTCCGTGTCACCGATGGTGCCTTGGTGGTGGTGGACTGTGTGTCAGGTGTGTGC
GTGCAGACAGAGACAGTGCTGCGCCAGGCTATTGCTGAGCGCATCAAGCCTGTGCTGATG
ATGAACAAGATGGACCGGGCCCTGCTCGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAG
ACCTTCCAGCGCATTGTGGAGAATGTCAATGTCATCATTTCCACCTATGGGGAGGGCGAG
AGTGGCCCCATGGGCAACATCATGATTGATCCTGTTCTTGGTACTGTTGGCTTTGGGTCT
GGTCTCCACGGTTGGGCCTTCACCCTGAAGCAGTTTGCAGAGATGTACGTTGCCAAGTTT
GCCGCCAAGGGCGAGGGCCAGTTGGGGCCTGCTGAGCGGGCCAAGAAGGTGGAGGACATG
ATGAAAAAGCTATGGGGAGACCGGTACTTTGATCCAGCCAATGGTAAATTCAGCAAGTCA
GCCACCAGCCCTGATGGCAAGAAGCTGCCGAGGACCTTCTGCCAGCTCATCTTGGACCCT
ATCTTCAAGGTGTTTGATGCCATCATGAATTTCAAGAAAGAGGAGACAGCAAAACTGATT
GAAAAACTAGACATCAAATTGGACAGTGAAGATAAGGACAAAGAAGGCAAACCACTGCTG
AAGGCTGTGATGCGCCGCTGGCTGCCCGCCGGGGATGCGCTGCTACAGATGATCACCATC
CACTTGCCCTCCCCCGTGACGGCCCAGAAGTACCGCTGTGAGCTCCTGTATGAGGGGCCT
CCGGACGACGAGGCAGCCATGGGCATTAAAAGCTGTGACCCCAAAGGCCCACTTATGATG
TACATTTCCAAAATGGTGCCGACCTCCGACAAAGGTCGGTTCTATGCCTTCGGCCGGGTC
TTCTCAGGGCTGGTGTCTACCGGTCTGAAGGTCAGGATCATGGGGCCCAACTACACCCCT
GGGAAGAAGGAGGACCTATACCTGAAGCCAATCCAGAGGACAATCCTTATGATGGGCCGC
TACGTGGAGCCCATTGAGGACGTGCCTTGTGGGAACATCGTGGGCTTGGTGGGCGTGGAC
CAGTTCCTGGTGAAGACAGGAACCATCACCACCTTTGAGCACGCCCACAACATGCGAGTG
ATGAAGTTTAGCGTGAGCCCTGTCGTCAGGGTCGCTGTGGAGGCCAAGAACCCGGCTGAC
CTGCCCAAGCTGGTGGAGGGCCTGAAGCGGCTGGCCAAGTCAGATCCCATGGTGCAGTGC
ATCATTGAGGAGTCTGGGGAGCACATCATCGCAGGGGCTGGAGAGCTGCACCTAGAGATC
TGCCTGAAGGACCTGGAGGAGGACCACGCCTGCATTCCTATCAAGAAATCTGACCCAGTT
GTCTCTTACCGTGAGACTGTCAGTGAGGAGTCAAATGTGCTCTGCTTGTCTAAGTCCCCC
AACAAGCACAACAGGCTATACATGAAAGCAAGGCCTTTCCCTGACGGCCTGGCTGAAGAC
ATCGACAAGGGAGAGGTGTCTGCCCGCCAGGAACTCAAGCAGCGGGCCCGCTACCTAGCT
GAGAAGTACGAGTGGGATGTGGCTGAGGCCCGCAAGATCTGGTGCTTTGGCCCTGATGGC
ACTGGCCCCAACATCCTCACTGACATCACCAAGGGTGTGCAGTACCTCAACGAGATCAAG
GACAGCGTGGTGGCTGGCTTCCAGTGGGCCACCAAAGAGGGGGCGCTGTGTGAGGAGAAC
ATGCGGGGTGTGCGATTTGATGTCCACGATGTGACACTGCACGCCGACGCCATCCACCGT
GGTGGTGGCCAGATCATCCCTACTGCACGGCGCTGCCTTTATGCCAGTGTGCTGACTGCC
CAGCCCAGGCTCATGGAGCCCATCTACCTTGTGGAGATCCAGTGTCCAGAACAAGTGGTT
GGTGGCATTTATGGTGTCCTGAACAGGAAGCGGGGCCACGTCTTTGAGGAGTCCCAGGTG
GCTGGTACCCCCATGTTTGTTGTGAAGGCTTACTTGCCTGTCAATGAATCCTTTGGCTTT
ACTGCTGACCTGAGATCCAACACAGGCGGCCAGGCCTTTCCCCAGTGTGTGTTCGACCAC
TGGCAGATCCTGCCCGGGGATCCCTTCGACAACACCAGTCGCCCCAGCCAGGTGGTGGCA
GAGACACGCAAGCGCAAAGGCCTGAAGGAAGGTATTCCGGCCCTGGACAACTTCCTGGAC
AAATTGTAGGCGGCTTCTCAGCAGCCTGCTGCCCAGTGGGACTGGCGCAGCCCCCGCGCC
CAGGGACAGGTGACCACAGCAACAAGCCCCCCACATTCTCCACGACACTTTGAGACTGTC
CAGACTCAGAAATGCTCTGCCTGACAGGTTTCTGGGGCCCACTTCGTGCCATCACTCAAC
ATGAACACTTGATGCCGTTTCTTTCAATATTTATTTGTAGATTTCAGAGGCAACAGAAAT
GCCCTCACAGCAGGGACTTATCTGGCTGTTGGGGGTGAGGGAAGGGATGGGGGACACCCA
ACACTTTGTTTCATAAGAGGAAAATTCATATCCAAAAAAAAAGTTGAAAATAAACGCATT
AAGAGGTTTATTTGGGTAAATGGCCCATAGTGGATTTTCCTCCATAAAGGGGGAGGAAAC
AGGCAGGTAGATGTTCTCTTTGGACAGAAACTAGAAGGCAGGAAATCCTGTGCAGTGTCA
CCATGAGCACCTCCAACTGTATTAGTGCCATTGGAATAATAAATTTGATATGGTGGTGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q58J86_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58J86_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1419-1531, - strand, RNAz p=0.902981

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1419-1531, - strand, RNAz p=0.902981

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-2338, gnl|bosTau2|chr14 (15211565-15209243)
               

               
               1-2338, gnl|Hg17|chr19 (3936450-3928330)
               

               
               1-2338, gnl|Mm7|chr10 (80969645-80973407)
               


               
               2351-3010, gnl|bosTau2|chr14 (15208853-15208219)
               

               
               2351-3010, gnl|Hg17|chr19 (3928317-3927210)
               

               
               2351-3010, gnl|Mm7|chr10 (80973518-80974353)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2338, gnl|bosTau2|chr14 (15211565-15209243)
               

               
               1-2338, gnl|Hg17|chr19 (3936450-3928330)
               

               
               1-2338, gnl|Mm7|chr10 (80969645-80973407)
               


               
               2351-3010, gnl|bosTau2|chr14 (15208853-15208219)
               

               
               2351-3010, gnl|Hg17|chr19 (3928317-3927210)
               

               
               2351-3010, gnl|Mm7|chr10 (80973518-80974353)

Expressed library(ies): 79 entry(ies)

More info

Expressed library(ies): 79 entry(ies)

Help | Less info


               
               pgl (2.48815)
               

               
               cov (2.2466)
               

               
               eru (2.04082)
               

               
               elu (1.92678)
               

               
               ssp (1.89728)
               

               
               eep (1.83846)
               

               
               ton (1.5795)
               

               
               fli (1.42017)
               

               
               mcp (1.36519)
               

               
               ldo (1.35804)
               

               
               cly (1.32706)
               

               
               bla (1.24347)
               

               
               fty (1.23088)
               

               
               sme (1.22175)
               

               
               clu (1.19646)
               

               
               fcc (1.18671)
               

               
               nje (1.16144)
               

               
               ecc (1.15035)
               

               
               cty (1.14488)
               

               
               ese (1.13852)
               

               
               nco (1.13214)
               

               
               csp (1.1283)
               

               
               nbm (1.09257)
               

               
               cli (1.06968)
               

               
               nms (1.06929)
               

               
               ill (1.05356)
               

               
               hea (1.02249)
               

               
               nlu (0.958405)
               

               
               ste (0.946458)
               

               
               ute (0.929491)
               

               
               fat (0.884564)
               

               
               spl (0.859107)
               

               
               lnt (0.853849)
               

               
               mas (0.84122)
               

               
               cga (0.837287)
               

               
               che (0.817884)
               

               
               jej (0.791374)
               

               
               eje (0.79067)
               

               
               cag (0.755972)
               

               
               hyp (0.714184)
               

               
               eye (0.682012)
               

               
               nmm (0.664011)
               

               
               cki (0.660939)
               

               
               aor (0.585823)
               

               
               med (0.58126)
               

               
               cst (0.560146)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               fhi (0.508733)
               

               
               cje (0.495704)
               

               
               ebs (0.473205)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               eli (0.455443)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               cte (0.29274)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

Expressed library(ies): 79 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (2.48815)
               

               
               cov (2.2466)
               

               
               eru (2.04082)
               

               
               elu (1.92678)
               

               
               ssp (1.89728)
               

               
               eep (1.83846)
               

               
               ton (1.5795)
               

               
               fli (1.42017)
               

               
               mcp (1.36519)
               

               
               ldo (1.35804)
               

               
               cly (1.32706)
               

               
               bla (1.24347)
               

               
               fty (1.23088)
               

               
               sme (1.22175)
               

               
               clu (1.19646)
               

               
               fcc (1.18671)
               

               
               nje (1.16144)
               

               
               ecc (1.15035)
               

               
               cty (1.14488)
               

               
               ese (1.13852)
               

               
               nco (1.13214)
               

               
               csp (1.1283)
               

               
               nbm (1.09257)
               

               
               cli (1.06968)
               

               
               nms (1.06929)
               

               
               ill (1.05356)
               

               
               hea (1.02249)
               

               
               nlu (0.958405)
               

               
               ste (0.946458)
               

               
               ute (0.929491)
               

               
               fat (0.884564)
               

               
               spl (0.859107)
               

               
               lnt (0.853849)
               

               
               mas (0.84122)
               

               
               cga (0.837287)
               

               
               che (0.817884)
               

               
               jej (0.791374)
               

               
               eje (0.79067)
               

               
               cag (0.755972)
               

               
               hyp (0.714184)
               

               
               eye (0.682012)
               

               
               nmm (0.664011)
               

               
               cki (0.660939)
               

               
               aor (0.585823)
               

               
               med (0.58126)
               

               
               cst (0.560146)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               cut (0.509771)
               

               
               fhi (0.508733)
               

               
               cje (0.495704)
               

               
               ebs (0.473205)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               eli (0.455443)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               cte (0.29274)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

	1-2338, gnl\|bosTau2\|chr14 (15211565-15209243)
	1-2338, gnl\|Hg17\|chr19 (3936450-3928330)
	1-2338, gnl\|Mm7\|chr10 (80969645-80973407)

	2351-3010, gnl\|bosTau2\|chr14 (15208853-15208219)
	2351-3010, gnl\|Hg17\|chr19 (3928317-3927210)
	2351-3010, gnl\|Mm7\|chr10 (80973518-80974353)

	pgl (2.48815)
	cov (2.2466)
	eru (2.04082)
	elu (1.92678)
	ssp (1.89728)
	eep (1.83846)
	ton (1.5795)
	fli (1.42017)
	mcp (1.36519)
	ldo (1.35804)
	cly (1.32706)
	bla (1.24347)
	fty (1.23088)
	sme (1.22175)
	clu (1.19646)
	fcc (1.18671)
	nje (1.16144)
	ecc (1.15035)
	cty (1.14488)
	ese (1.13852)
	nco (1.13214)
	csp (1.1283)
	nbm (1.09257)
	cli (1.06968)
	nms (1.06929)
	ill (1.05356)
	hea (1.02249)
	nlu (0.958405)
	ste (0.946458)
	ute (0.929491)
	fat (0.884564)
	spl (0.859107)
	lnt (0.853849)
	mas (0.84122)
	cga (0.837287)
	che (0.817884)
	jej (0.791374)
	eje (0.79067)
	cag (0.755972)
	hyp (0.714184)
	eye (0.682012)
	nmm (0.664011)
	cki (0.660939)
	aor (0.585823)
	med (0.58126)
	cst (0.560146)
	cmu (0.55918)
	hlv (0.557025)
	nep (0.551775)
	fce (0.543183)
	pro (0.512033)
	cut (0.509771)
	fhi (0.508733)
	cje (0.495704)
	ebs (0.473205)
	ece (0.45861)
	jca (0.45584)
	eli (0.455443)
	pty (0.428143)
	amn (0.417711)
	ova (0.387397)
	sug (0.381874)
	rec (0.346141)
	duo (0.345602)
	cte (0.29274)
	nca (0.273748)
	thg (0.253582)
	mgp (0.230681)
	sag (0.182715)
	mgm (0.180343)
	sin (0.174948)
	tbr (0.154178)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	csk (0.140746)
	pla (0.133672)
	tra (0.123092)