Ss1.1-Utr1-UTR01D090107.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGCGAACAGGGAAGTGGCTGCATTCAGCCTTGCATAGCAATGCACAGCTTTGCATAA GCAATAGAGGTAGGCTTTTAAAGGCGTCGTCACCAGCACGAATCTTGTAGTTATCCCGGC GCGAACCCATCTTTCGTGATGAGCCCTCTGATGCAGGCTCCGCTTCTGATCGCCCTGGGC TTGCTTCTCACCTGCCCAGCGGCTCCTGCACTCCTCCTCCCGAACCAGCTCAGTCACTTC TCCTGGGAAAACTGTGATGGCGGGAAGGACCCTGCGGTGATCAACAGCCTGACTCTGAAA CCCGACCCTATTGCCATTCCTGGGAACTTGAATGTCAGTGCTGAGGTCAGGACCAGTGTT CTCCTTAATGATCCTCTGAAGGTAGAATTAACTGTGGAGAAGGAAGTTGCTGGCTTCTGG GTCACAATCCCATGTGTGGAAAAGATGGGGAGCTGCACCTACGACAACATCTGTGATATC CTTGAAGTCTTAATTCCCCTTGAGGATACCTGCCCAGAACCTCTGCACACCTATGGCCTT CCCTGCCACTGTCCCTTCAAAGCCGGCACCTACTCACTGCCTGAGTCCGAATTCATCCTG CCTCAACTGGAGCTACCTGGCTGGCTCAGCTCCGGGAACTACCGCATCCAGGGCATCATG AGCAGCAATGGGAAGCACCTGGGCTGTGCCAAGATCTCCCTCTCCCTAAAGGGCAAATAA GGTGGCACCCGCCACTCCAGAATGAAGGGGGTGCAAAGACGGCATCATCTTCTTCTGTCT TACGTTGACCAAGGCCAAGTTCCTTTTTCAAGCACCTTTCTAGAAACAATGACACTCTCT CACTGAAAGTTGTTTTATGCCCTCTATGCAATTTTTAGGCATGATCCAGCAGCCTTAACC CAAGGGAGGTTGAGCCTGGTGGTCTGTAACAGCCCAGGACCTCTGCTGGGCTGGCCACTG CATTTTCCTCCTCACCCCATGGCGTCCTCTTTAAGAACTTAACTCTTCTTCTAAACCATC AAGGAGGGGGGCTAACACGTTTTGTGACCCCCCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGCGAACAGGGAAGTGGCTGCATTCAGCCTTGCATAGCAATGCACAGCTTTGCATAA GCAATAGAGGTAGGCTTTTAAAGGCGTCGTCACCAGCACGAATCTTGTAGTTATCCCGGC GCGAACCCATCTTTCGTGATGAGCCCTCTGATGCAGGCTCCGCTTCTGATCGCCCTGGGC TTGCTTCTCACCTGCCCAGCGGCTCCTGCACTCCTCCTCCCGAACCAGCTCAGTCACTTC TCCTGGGAAAACTGTGATGGCGGGAAGGACCCTGCGGTGATCAACAGCCTGACTCTGAAA CCCGACCCTATTGCCATTCCTGGGAACTTGAATGTCAGTGCTGAGGTCAGGACCAGTGTT CTCCTTAATGATCCTCTGAAGGTAGAATTAACTGTGGAGAAGGAAGTTGCTGGCTTCTGG GTCACAATCCCATGTGTGGAAAAGATGGGGAGCTGCACCTACGACAACATCTGTGATATC CTTGAAGTCTTAATTCCCCTTGAGGATACCTGCCCAGAACCTCTGCACACCTATGGCCTT CCCTGCCACTGTCCCTTCAAAGCCGGCACCTACTCACTGCCTGAGTCCGAATTCATCCTG CCTCAACTGGAGCTACCTGGCTGGCTCAGCTCCGGGAACTACCGCATCCAGGGCATCATG AGCAGCAATGGGAAGCACCTGGGCTGTGCCAAGATCTCCCTCTCCCTAAAGGGCAAATAA GGTGGCACCCGCCACTCCAGAATGAAGGGGGTGCAAAGACGGCATCATCTTCTTCTGTCT TACGTTGACCAAGGCCAAGTTCCTTTTTCAAGCACCTTTCTAGAAACAATGACACTCTCT CACTGAAAGTTGTTTTATGCCCTCTATGCAATTTTTAGGCATGATCCAGCAGCCTTAACC CAAGGGAGGTTGAGCCTGGTGGTCTGTAACAGCCCAGGACCTCTGCTGGGCTGGCCACTG CATTTTCCTCCTCACCCCATGGCGTCCTCTTTAAGAACTTAACTCTTCTTCTAAACCATC AAGGAGGGGGGCTAACACGTTTTGTGACCCCCCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 680-826, - strand, RNAz p=0.965739 | |
| 897-1014, + strand, RNAz p=0.999982 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 680-826, - strand, RNAz p=0.965739 | |
| 897-1014, + strand, RNAz p=0.999982 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC009273, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 225-383, gnl|bosTau2|chr7 (43192636-43192794) | |
| 225-383, gnl|canFam2|chr4 (61213760-61213636) | |
| 225-383, gnl|canFam2|chr4 (61213760-61213642) | |
| 225-383, gnl|canFam2|chr4 (61213771-61213608) | |
| 225-383, gnl|danRer3|chr8 (32523788-32523654) | |
| 225-383, gnl|danRer3|chr8 (32523787-32523636) | |
| 225-383, gnl|echTel1|scaffold_75724 (1047-1174) | |
| 225-383, gnl|echTel1|scaffold_75724 (1045-1168) | |
| 225-383, gnl|echTel1|scaffold_75724 (1042-1202) | |
| 225-383, gnl|fr1|chrUn (210366937-210366822) | |
| 225-383, gnl|fr1|chrUn (210366939-210366777) | |
| 225-383, gnl|hg17|chr1 (168093111-168093246) | |
| 225-383, gnl|hg17|chr3 (146885133-146885259) | |
| 225-383, gnl|hg17|chr5 (150619514-150619677) | |
| 225-383, gnl|Hg17|chr5 (150619514-150619672) | |
| 225-383, gnl|loxAfr1|scaffold_11191 (32363-32490) | |
| 225-383, gnl|loxAfr1|scaffold_11191 (32365-32484) | |
| 225-383, gnl|loxAfr1|scaffold_11191 (32358-32518) | |
| 225-383, gnl|mm7|chr11 (55060350-55060460) | |
| 225-383, gnl|mm7|chr11 (55060352-55060478) | |
| 225-383, gnl|mm7|chr11 (55060349-55060512) | |
| 225-383, gnl|Mm7|chr11 (55060349-55060507) | |
| 225-383, gnl|monDom2|scaffold_6 (55240537-55240374) | |
| 225-383, gnl|oryCun1|scaffold_201733 (1446-1283) | |
| 225-383, gnl|oryCun1|scaffold_4924 (10859-10738) | |
| 225-383, gnl|oryCun1|scaffold_4924 (10857-10744) | |
| 225-383, gnl|panTro1|chr1 (150381348-150381483) | |
| 225-383, gnl|panTro1|chr2 (149669113-149669239) | |
| 225-383, gnl|panTro1|chr4 (157572282-157572445) | |
| 225-383, gnl|rheMac2|chr1 (201099761-201099898) | |
| 225-383, gnl|rheMac2|chr2 (142091273-142091147) | |
| 225-383, gnl|rheMac2|chr6 (147675703-147675866) | |
| 225-383, gnl|rn3|chr10 (40521183-40521317) | |
| 225-383, gnl|rn3|chr10 (40521185-40521311) | |
| 225-383, gnl|rn3|chr10 (40521182-40521345) | |
| 225-383, gnl|tetNig1|chr1_random (4399322-4399485) | |
| 225-383, gnl|xenTro1|scaffold_10 (3007161-3007291) | |
| 225-383, gnl|xenTro1|scaffold_10 (3007161-3007320) | |
| 531-1014, gnl|bosTau2|chr7 (43199101-43199595) | |
| 531-1014, gnl|Hg17|chr5 (150627007-150627500) | |
| 531-1014, gnl|Mm7|chr11 (55066124-55066525) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-383, gnl|bosTau2|chr7 (43192636-43192794) | |
| 225-383, gnl|canFam2|chr4 (61213760-61213636) | |
| 225-383, gnl|canFam2|chr4 (61213760-61213642) | |
| 225-383, gnl|canFam2|chr4 (61213771-61213608) | |
| 225-383, gnl|danRer3|chr8 (32523788-32523654) | |
| 225-383, gnl|danRer3|chr8 (32523787-32523636) | |
| 225-383, gnl|echTel1|scaffold_75724 (1047-1174) | |
| 225-383, gnl|echTel1|scaffold_75724 (1045-1168) | |
| 225-383, gnl|echTel1|scaffold_75724 (1042-1202) | |
| 225-383, gnl|fr1|chrUn (210366937-210366822) | |
| 225-383, gnl|fr1|chrUn (210366939-210366777) | |
| 225-383, gnl|hg17|chr1 (168093111-168093246) | |
| 225-383, gnl|hg17|chr3 (146885133-146885259) | |
| 225-383, gnl|hg17|chr5 (150619514-150619677) | |
| 225-383, gnl|Hg17|chr5 (150619514-150619672) | |
| 225-383, gnl|loxAfr1|scaffold_11191 (32363-32490) | |
| 225-383, gnl|loxAfr1|scaffold_11191 (32365-32484) | |
| 225-383, gnl|loxAfr1|scaffold_11191 (32358-32518) | |
| 225-383, gnl|mm7|chr11 (55060350-55060460) | |
| 225-383, gnl|mm7|chr11 (55060352-55060478) | |
| 225-383, gnl|mm7|chr11 (55060349-55060512) | |
| 225-383, gnl|Mm7|chr11 (55060349-55060507) | |
| 225-383, gnl|monDom2|scaffold_6 (55240537-55240374) | |
| 225-383, gnl|oryCun1|scaffold_201733 (1446-1283) | |
| 225-383, gnl|oryCun1|scaffold_4924 (10859-10738) | |
| 225-383, gnl|oryCun1|scaffold_4924 (10857-10744) | |
| 225-383, gnl|panTro1|chr1 (150381348-150381483) | |
| 225-383, gnl|panTro1|chr2 (149669113-149669239) | |
| 225-383, gnl|panTro1|chr4 (157572282-157572445) | |
| 225-383, gnl|rheMac2|chr1 (201099761-201099898) | |
| 225-383, gnl|rheMac2|chr2 (142091273-142091147) | |
| 225-383, gnl|rheMac2|chr6 (147675703-147675866) | |
| 225-383, gnl|rn3|chr10 (40521183-40521317) | |
| 225-383, gnl|rn3|chr10 (40521185-40521311) | |
| 225-383, gnl|rn3|chr10 (40521182-40521345) | |
| 225-383, gnl|tetNig1|chr1_random (4399322-4399485) | |
| 225-383, gnl|xenTro1|scaffold_10 (3007161-3007291) | |
| 225-383, gnl|xenTro1|scaffold_10 (3007161-3007320) | |
| 531-1014, gnl|bosTau2|chr7 (43199101-43199595) | |
| 531-1014, gnl|Hg17|chr5 (150627007-150627500) | |
| 531-1014, gnl|Mm7|chr11 (55066124-55066525) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ute (0.398353) | |
| cly (0.241284) | |
| nep (0.183925) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cov (0.132153) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.398353) | |
| cly (0.241284) | |
| nep (0.183925) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cov (0.132153) |