Ss1.1-Utr1-UTR01D110094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCGCCGTGAGGCCTGTCTGACCGACCTTCAGCCGGGCCGGTGCCACCATGTTTTCTCG GGCAGGCGTCGCGGGTCTCTCGGCTTGGGCCGTGCAGCCGCAATGGATCCAAGTTCGAAA TATGGCAACCTTGAAAGATATTACCAGGCGACTAAAGTCAATCAAAAACATCCAGAAAAT TACCAAGTCTATGAAAATGGTAGCAGCAGCGAAATATGCCCGAGCCGAGCGGGACCTGAA GCCAGCCCGAGTGTATGGGATAGGGTCCTTGGCTCTGTATGAAAAGGCTGATATTAAGGT ACCTGAAGACAAGAAGAAACACCTCATCATCGGTGTGTCCTCAGACCGAGGGCTTTGTGG TGCTATTCATTCCTCAGTGGCTAAACAGATAAAAAGCGAGGTGGCCAATCTCACAGCAGC TGGGAAGGAAGTTAAGATTGTTGGAGTTGGTGATAAAATCCGGGGCATCCTCCACAGGAC GCACTCGGACCAGTTTCTAGTGACATTCAAGGAAGTGGGGAGGAAGCCCCCCACCTTTGG GGATGCGTCGGTGATTGCCCTCGAGCTGTTAAATTCTGGATATGAGTTTGATGAAGGGTC TATCATCTTCAACCGATTCAGGTCTGTCATCTCCTACAAGACAGAAGAAAAGCCCATCTT CTCCCTTGATACCGTTGCAAGTGCTGAGAGCATGAGTATCTATGATGATATTGATGCTGA TGTGCTGCGGAACTACCAGGAGTACAGCCTGGCCAACATCATCTACTATTCCCTGAAGGA GTCCACCACGAGTGAGCAGAGCGCCAGGATGACGGCCATGGACAACGCGAGCAAGAATGC TTCGGAAATGATTGATAAATTGACTTTGACATTCAATCGCACCCGCCAAGCTGTCATCAC AAAGGAGCTGATTGAAATCATCTCCGGTGCCGCGGCTCTGGAGTAGTGAAATCGAGTTCC GTCCACAGACAAGAGGTAAAGAAGAATTCAGCCAGCTGGCTATTTTTAGCTTTCTGCTGT CCTTGTCAGAAGAAGTTGTTGTTCCATTGTCTAAATTACTAAAGGCAGCAAGATATTTGT AAATTATCTTACAATAAATGAGTCACTATACGGAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCGCCGTGAGGCCTGTCTGACCGACCTTCAGCCGGGCCGGTGCCACCATGTTTTCTCG GGCAGGCGTCGCGGGTCTCTCGGCTTGGGCCGTGCAGCCGCAATGGATCCAAGTTCGAAA TATGGCAACCTTGAAAGATATTACCAGGCGACTAAAGTCAATCAAAAACATCCAGAAAAT TACCAAGTCTATGAAAATGGTAGCAGCAGCGAAATATGCCCGAGCCGAGCGGGACCTGAA GCCAGCCCGAGTGTATGGGATAGGGTCCTTGGCTCTGTATGAAAAGGCTGATATTAAGGT ACCTGAAGACAAGAAGAAACACCTCATCATCGGTGTGTCCTCAGACCGAGGGCTTTGTGG TGCTATTCATTCCTCAGTGGCTAAACAGATAAAAAGCGAGGTGGCCAATCTCACAGCAGC TGGGAAGGAAGTTAAGATTGTTGGAGTTGGTGATAAAATCCGGGGCATCCTCCACAGGAC GCACTCGGACCAGTTTCTAGTGACATTCAAGGAAGTGGGGAGGAAGCCCCCCACCTTTGG GGATGCGTCGGTGATTGCCCTCGAGCTGTTAAATTCTGGATATGAGTTTGATGAAGGGTC TATCATCTTCAACCGATTCAGGTCTGTCATCTCCTACAAGACAGAAGAAAAGCCCATCTT CTCCCTTGATACCGTTGCAAGTGCTGAGAGCATGAGTATCTATGATGATATTGATGCTGA TGTGCTGCGGAACTACCAGGAGTACAGCCTGGCCAACATCATCTACTATTCCCTGAAGGA GTCCACCACGAGTGAGCAGAGCGCCAGGATGACGGCCATGGACAACGCGAGCAAGAATGC TTCGGAAATGATTGATAAATTGACTTTGACATTCAATCGCACCCGCCAAGCTGTCATCAC AAAGGAGCTGATTGAAATCATCTCCGGTGCCGCGGCTCTGGAGTAGTGAAATCGAGTTCC GTCCACAGACAAGAGGTAAAGAAGAATTCAGCCAGCTGGCTATTTTTAGCTTTCTGCTGT CCTTGTCAGAAGAAGTTGTTGTTCCATTGTCTAAATTACTAAAGGCAGCAAGATATTTGT AAATTATCTTACAATAAATGAGTCACTATACGGAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 998-1110, - strand, RNAz p=0.925304 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 998-1110, - strand, RNAz p=0.925304 |
| Aligned organism(s): 84 entry(ies) | More info |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
| 3-106, gnl|bosTau2|chr13 (8309598-8309495) | |
| 3-106, gnl|canFam2|chr2 (31170066-31169706) | |
| 3-106, gnl|canFam2|chr6 (13086124-13086056) | |
| 3-106, gnl|dasNov1|scaffold_21456 (4709-4354) | |
| 3-106, gnl|dasNov1|scaffold_46815 (5463-5512) | |
| 3-106, gnl|echTel1|scaffold_260469 (9904-9997) | |
| 3-106, gnl|echTel1|scaffold_309280 (5387-5033) | |
| 3-106, gnl|galGal2|chr1 (6139566-6139192) | |
| 3-106, gnl|hg17|chr10 (7869941-7870312) | |
| 3-106, gnl|Hg17|chr10 (7870130-7870233) | |
| 3-106, gnl|hg17|chr14 (53528410-53528497) | |
| 3-106, gnl|loxAfr1|scaffold_1138 (61367-61449) | |
| 3-106, gnl|loxAfr1|scaffold_1138 (61663-61286) | |
| 3-106, gnl|mm7|chr13 (74684074-74684133) | |
| 3-106, gnl|mm7|chr2 (10019767-10019445) | |
| 3-106, gnl|Mm7|chr2 (10019601-10019505) | |
| 3-106, gnl|monDom2|scaffold_30 (4401582-4401974) | |
| 3-106, gnl|monDom2|scaffold_39 (21974427-21974349) | |
| 3-106, gnl|oryCun1|scaffold_209875 (62015-62370) | |
| 3-106, gnl|oryCun1|scaffold_86437 (3018-3088) | |
| 3-106, gnl|panTro1|chr15 (52979242-52979329) | |
| 3-106, gnl|panTro1|chr8 (7971671-7972056) | |
| 3-106, gnl|rheMac2|chr7 (117015710-117015797) | |
| 3-106, gnl|rheMac2|chr9 (7984039-7984410) | |
| 3-106, gnl|rn3|chr1 (41631473-41631414) | |
| 3-106, gnl|rn3|chr17 (79749665-79749988) | |
| 3-106, gnl|xenTro1|scaffold_934 (341597-341940) | |
| 272-478, gnl|bosTau2|chr13 (8299735-8299529) | |
| 272-478, gnl|canFam2|chr2 (31157872-31157649) | |
| 272-478, gnl|danRer3|chr4 (22971673-22971896) | |
| 272-478, gnl|dasNov1|scaffold_95365 (10660-10437) | |
| 272-478, gnl|echTel1|scaffold_241270 (280-503) | |
| 272-478, gnl|fr1|chrUn (134691720-134691938) | |
| 272-478, gnl|galGal2|chr1 (6136872-6136645) | |
| 272-478, gnl|hg17|chr10 (7880948-7881171) | |
| 272-478, gnl|Hg17|chr10 (7880958-7881164) | |
| 272-478, gnl|loxAfr1|scaffold_1138 (43668-43445) | |
| 272-478, gnl|mm7|chr2 (10003482-10003259) | |
| 272-478, gnl|Mm7|chr2 (10003470-10003264) | |
| 272-478, gnl|monDom2|scaffold_30 (4423727-4423952) | |
| 272-478, gnl|oryCun1|scaffold_145495 (3332-3555) | |
| 272-478, gnl|panTro1|chr8 (7982723-7982946) | |
| 272-478, gnl|rheMac2|chr9 (7995074-7995297) | |
| 272-478, gnl|rn3|chr17 (79766367-79766590) | |
| 272-478, gnl|tetNig1|chr19 (532831-532610) | |
| 272-478, gnl|xenTro1|scaffold_934 (345431-345651) | |
| 686-842, gnl|bosTau2|chr13 (8297624-8297468) | |
| 686-842, gnl|canFam2|chr2 (31155558-31155397) | |
| 686-842, gnl|canFam2|chr6 (13087073-13086902) | |
| 686-842, gnl|danRer3|chr4 (22973969-22973810) | |
| 686-842, gnl|danRer3|chr4 (22973813-22973977) | |
| 686-842, gnl|dasNov1|scaffold_46815 (4762-4935) | |
| 686-842, gnl|dasNov1|scaffold_95365 (8341-8180) | |
| 686-842, gnl|echTel1|scaffold_241270 (3931-4154) | |
| 686-842, gnl|echTel1|scaffold_260469 (9169-9340) | |
| 686-842, gnl|fr1|chrUn (134692564-134692405) | |
| 686-842, gnl|fr1|chrUn (134692408-134692574) | |
| 686-842, gnl|galGal2|chr1 (6135067-6135224) | |
| 686-842, gnl|galGal2|chr1 (6135223-6135055) | |
| 686-842, gnl|hg17|chr10 (7884237-7884407) | |
| 686-842, gnl|Hg17|chr10 (7884238-7884394) | |
| 686-842, gnl|hg17|chr14 (53527675-53527847) | |
| 686-842, gnl|loxAfr1|scaffold_1138 (41247-41405) | |
| 686-842, gnl|loxAfr1|scaffold_1138 (41403-41233) | |
| 686-842, gnl|mm7|chr13 (74682843-74683015) | |
| 686-842, gnl|mm7|chr2 (9998818-9998649) | |
| 686-842, gnl|Mm7|chr2 (9998815-9998659) | |
| 686-842, gnl|monDom2|scaffold_30 (4428311-4428480) | |
| 686-842, gnl|monDom2|scaffold_39 (21975377-21975194) | |
| 686-842, gnl|oryCun1|scaffold_145495 (5759-5929) | |
| 686-842, gnl|oryCun1|scaffold_86437 (2303-2474) | |
| 686-842, gnl|panTro1|chr15 (52978507-52978679) | |
| 686-842, gnl|panTro1|chr8 (7986007-7986177) | |
| 686-842, gnl|rheMac2|chr7 (117014660-117014832) | |
| 686-842, gnl|rheMac2|chr9 (7998084-7998254) | |
| 686-842, gnl|rn3|chr1 (41632186-41632014) | |
| 686-842, gnl|rn3|chr17 (79768280-79768449) | |
| 686-842, gnl|tetNig1|chr19 (531970-532129) | |
| 686-842, gnl|tetNig1|chr19 (532126-531956) | |
| 686-842, gnl|xenTro1|scaffold_934 (350315-350148) | |
| 686-842, gnl|xenTro1|scaffold_934 (350159-350344) | |
| 974-1110, gnl|bosTau2|chr13 (8293990-8293852) | |
| 974-1110, gnl|Hg17|chr10 (7889626-7889767) | |
| 974-1110, gnl|Mm7|chr2 (9995321-9995191) |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-106, gnl|bosTau2|chr13 (8309598-8309495) | |
| 3-106, gnl|canFam2|chr2 (31170066-31169706) | |
| 3-106, gnl|canFam2|chr6 (13086124-13086056) | |
| 3-106, gnl|dasNov1|scaffold_21456 (4709-4354) | |
| 3-106, gnl|dasNov1|scaffold_46815 (5463-5512) | |
| 3-106, gnl|echTel1|scaffold_260469 (9904-9997) | |
| 3-106, gnl|echTel1|scaffold_309280 (5387-5033) | |
| 3-106, gnl|galGal2|chr1 (6139566-6139192) | |
| 3-106, gnl|hg17|chr10 (7869941-7870312) | |
| 3-106, gnl|Hg17|chr10 (7870130-7870233) | |
| 3-106, gnl|hg17|chr14 (53528410-53528497) | |
| 3-106, gnl|loxAfr1|scaffold_1138 (61367-61449) | |
| 3-106, gnl|loxAfr1|scaffold_1138 (61663-61286) | |
| 3-106, gnl|mm7|chr13 (74684074-74684133) | |
| 3-106, gnl|mm7|chr2 (10019767-10019445) | |
| 3-106, gnl|Mm7|chr2 (10019601-10019505) | |
| 3-106, gnl|monDom2|scaffold_30 (4401582-4401974) | |
| 3-106, gnl|monDom2|scaffold_39 (21974427-21974349) | |
| 3-106, gnl|oryCun1|scaffold_209875 (62015-62370) | |
| 3-106, gnl|oryCun1|scaffold_86437 (3018-3088) | |
| 3-106, gnl|panTro1|chr15 (52979242-52979329) | |
| 3-106, gnl|panTro1|chr8 (7971671-7972056) | |
| 3-106, gnl|rheMac2|chr7 (117015710-117015797) | |
| 3-106, gnl|rheMac2|chr9 (7984039-7984410) | |
| 3-106, gnl|rn3|chr1 (41631473-41631414) | |
| 3-106, gnl|rn3|chr17 (79749665-79749988) | |
| 3-106, gnl|xenTro1|scaffold_934 (341597-341940) | |
| 272-478, gnl|bosTau2|chr13 (8299735-8299529) | |
| 272-478, gnl|canFam2|chr2 (31157872-31157649) | |
| 272-478, gnl|danRer3|chr4 (22971673-22971896) | |
| 272-478, gnl|dasNov1|scaffold_95365 (10660-10437) | |
| 272-478, gnl|echTel1|scaffold_241270 (280-503) | |
| 272-478, gnl|fr1|chrUn (134691720-134691938) | |
| 272-478, gnl|galGal2|chr1 (6136872-6136645) | |
| 272-478, gnl|hg17|chr10 (7880948-7881171) | |
| 272-478, gnl|Hg17|chr10 (7880958-7881164) | |
| 272-478, gnl|loxAfr1|scaffold_1138 (43668-43445) | |
| 272-478, gnl|mm7|chr2 (10003482-10003259) | |
| 272-478, gnl|Mm7|chr2 (10003470-10003264) | |
| 272-478, gnl|monDom2|scaffold_30 (4423727-4423952) | |
| 272-478, gnl|oryCun1|scaffold_145495 (3332-3555) | |
| 272-478, gnl|panTro1|chr8 (7982723-7982946) | |
| 272-478, gnl|rheMac2|chr9 (7995074-7995297) | |
| 272-478, gnl|rn3|chr17 (79766367-79766590) | |
| 272-478, gnl|tetNig1|chr19 (532831-532610) | |
| 272-478, gnl|xenTro1|scaffold_934 (345431-345651) | |
| 686-842, gnl|bosTau2|chr13 (8297624-8297468) | |
| 686-842, gnl|canFam2|chr2 (31155558-31155397) | |
| 686-842, gnl|canFam2|chr6 (13087073-13086902) | |
| 686-842, gnl|danRer3|chr4 (22973969-22973810) | |
| 686-842, gnl|danRer3|chr4 (22973813-22973977) | |
| 686-842, gnl|dasNov1|scaffold_46815 (4762-4935) | |
| 686-842, gnl|dasNov1|scaffold_95365 (8341-8180) | |
| 686-842, gnl|echTel1|scaffold_241270 (3931-4154) | |
| 686-842, gnl|echTel1|scaffold_260469 (9169-9340) | |
| 686-842, gnl|fr1|chrUn (134692564-134692405) | |
| 686-842, gnl|fr1|chrUn (134692408-134692574) | |
| 686-842, gnl|galGal2|chr1 (6135067-6135224) | |
| 686-842, gnl|galGal2|chr1 (6135223-6135055) | |
| 686-842, gnl|hg17|chr10 (7884237-7884407) | |
| 686-842, gnl|Hg17|chr10 (7884238-7884394) | |
| 686-842, gnl|hg17|chr14 (53527675-53527847) | |
| 686-842, gnl|loxAfr1|scaffold_1138 (41247-41405) | |
| 686-842, gnl|loxAfr1|scaffold_1138 (41403-41233) | |
| 686-842, gnl|mm7|chr13 (74682843-74683015) | |
| 686-842, gnl|mm7|chr2 (9998818-9998649) | |
| 686-842, gnl|Mm7|chr2 (9998815-9998659) | |
| 686-842, gnl|monDom2|scaffold_30 (4428311-4428480) | |
| 686-842, gnl|monDom2|scaffold_39 (21975377-21975194) | |
| 686-842, gnl|oryCun1|scaffold_145495 (5759-5929) | |
| 686-842, gnl|oryCun1|scaffold_86437 (2303-2474) | |
| 686-842, gnl|panTro1|chr15 (52978507-52978679) | |
| 686-842, gnl|panTro1|chr8 (7986007-7986177) | |
| 686-842, gnl|rheMac2|chr7 (117014660-117014832) | |
| 686-842, gnl|rheMac2|chr9 (7998084-7998254) | |
| 686-842, gnl|rn3|chr1 (41632186-41632014) | |
| 686-842, gnl|rn3|chr17 (79768280-79768449) | |
| 686-842, gnl|tetNig1|chr19 (531970-532129) | |
| 686-842, gnl|tetNig1|chr19 (532126-531956) | |
| 686-842, gnl|xenTro1|scaffold_934 (350315-350148) | |
| 686-842, gnl|xenTro1|scaffold_934 (350159-350344) | |
| 974-1110, gnl|bosTau2|chr13 (8293990-8293852) | |
| 974-1110, gnl|Hg17|chr10 (7889626-7889767) | |
| 974-1110, gnl|Mm7|chr2 (9995321-9995191) |
| Expressed library(ies): 76 entry(ies) | More info |
| Expressed library(ies): 76 entry(ies) | Help | Less info |
| hea (3.47648) | |
| cst (1.68044) | |
| hlv (1.39256) | |
| che (1.22683) | |
| ssp (1.21968) | |
| cki (1.15664) | |
| ste (1.08167) | |
| isp (1.05263) | |
| ova (1.03306) | |
| sug (1.01833) | |
| vin (0.997672) | |
| tbr (0.925069) | |
| sto (0.899119) | |
| ldo (0.873024) | |
| cbe (0.717703) | |
| csk (0.70373) | |
| ton (0.702001) | |
| jej (0.692452) | |
| nje (0.66368) | |
| nms (0.641574) | |
| sme (0.610874) | |
| lyg (0.532411) | |
| fty (0.527519) | |
| rec (0.519211) | |
| cje (0.495704) | |
| mga (0.480615) | |
| ece (0.45861) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| lin (0.436808) | |
| ute (0.398353) | |
| col (0.390016) | |
| ret (0.3862) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| sag (0.36543) | |
| gul (0.355177) | |
| duo (0.345602) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| lun (0.300978) | |
| nbm (0.297974) | |
| liv (0.292569) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| thg (0.253582) | |
| bla (0.248694) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| cli (0.152812) | |
| eli (0.151814) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 76 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (3.47648) | |
| cst (1.68044) | |
| hlv (1.39256) | |
| che (1.22683) | |
| ssp (1.21968) | |
| cki (1.15664) | |
| ste (1.08167) | |
| isp (1.05263) | |
| ova (1.03306) | |
| sug (1.01833) | |
| vin (0.997672) | |
| tbr (0.925069) | |
| sto (0.899119) | |
| ldo (0.873024) | |
| cbe (0.717703) | |
| csk (0.70373) | |
| ton (0.702001) | |
| jej (0.692452) | |
| nje (0.66368) | |
| nms (0.641574) | |
| sme (0.610874) | |
| lyg (0.532411) | |
| fty (0.527519) | |
| rec (0.519211) | |
| cje (0.495704) | |
| mga (0.480615) | |
| ece (0.45861) | |
| bfe (0.449573) | |
| fat (0.442282) | |
| lin (0.436808) | |
| ute (0.398353) | |
| col (0.390016) | |
| ret (0.3862) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| sag (0.36543) | |
| gul (0.355177) | |
| duo (0.345602) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| lun (0.300978) | |
| nbm (0.297974) | |
| liv (0.292569) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| thg (0.253582) | |
| bla (0.248694) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| cli (0.152812) | |
| eli (0.151814) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) |