Ss1.1-Utr1-UTR01E030087.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCCCACTCCCTGAGGTATTTCGACACCGCCGTGTCCCGGCCCGACCGCGGGAAGACCC GTTTCATCTCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCC CCAATCCGCGGATGGAGCCGCGGGCGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGGG ATAGGAACACGCGGAACGCCGTGGGCAGCGCACAGACTTTCCGAGTGAGCCTGAACAACC TGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCCTCCAGAGCATGTACGGCT GCGACGTGGGGCCAGACGGGCTCCTCCTCCGCGGGTACAGTCAGTTTGGCTACGACGGCG CCGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTC AGATCACCAAGCGCAAGTGGGAGGCGGCCGATGCGGCGGAGCAGGAGAGGAGCTACCTGC AGGGCCGGTGTCTGGAGTGGCTCCAGAAATACCTGGAGATGGGGGAGGACACGCTGCAGC GCGCAGAGCCTCCAAAGACACATGTGACCTGCCACCCCAGCTCTGACCTGGGGGTCACCT TGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGG GCCAAGACCAGAGCCAGGACATGGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTC CAGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTG CAGCACGAGGGCCTGCAGGAGCCCCTCACCCTGAGATGGGACCCTCCTCAGCCCCCCGTC CCCATCGTGGGCATCATTGTTGGCCTGGTTCTCGTCCTGGTCGCTGGAGCCGTGGTGACT GGAGTTGTGATCTGGAGGAAGAAGCGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCT GCAGGCAGTGACAGTGCCCAGGGCTCCGATGTGTCCCTTACCAAGGATCCTAGAGTGTGA GACAGCTGCCTTGTGGGGACTGAGTGACACAGATTTGTTCACGTCCCACTTTGTGACTTC GGATCCCCTGCCTCCTGTTTCTGCAGCTGCCTCTGAAAGGGTCTGTGTTCCTATGAGCAT CATGAGAGGAGGTGGGGACCCTGGCCCAGCCCTGCCCCCCACGTCCCCTCTTCACCCTGA CCTGTGTTCTCTTTCCTGATCCACTTTCCAGCTCCAACAAGTTGGGGGGAGGCAGGCGGC AATGGACCATCTCCATCCTTATCCTAAATTCATTGCCCTGACTGGTGACTGCGGGGAGGA GCCGAGGAGACACAGGAGGCCAAGGAAGGGAACTAGCCTGACGGCACAGTTCCAAAGGCA GGGTTCCTAACCAAGGGAAAAGAGCCTACCCACCGGCACAGTTCCAAGGGTAGGTTTAGA AATAGGGAAAGGGGCTTACCCGGTGGCACAGTTCCAAGGGCAAGTTATAAAAATAATGAG GCTCACCTGCTAACCTGACTACAACAGCAACAATAACAAAACGAAGGTTTTGCACAATAG TGCAAGAATAAAAATTGCTTCTTGGAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCCCACTCCCTGAGGTATTTCGACACCGCCGTGTCCCGGCCCGACCGCGGGAAGACCC GTTTCATCTCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCC CCAATCCGCGGATGGAGCCGCGGGCGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGGG ATAGGAACACGCGGAACGCCGTGGGCAGCGCACAGACTTTCCGAGTGAGCCTGAACAACC TGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCCTCCAGAGCATGTACGGCT GCGACGTGGGGCCAGACGGGCTCCTCCTCCGCGGGTACAGTCAGTTTGGCTACGACGGCG CCGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTC AGATCACCAAGCGCAAGTGGGAGGCGGCCGATGCGGCGGAGCAGGAGAGGAGCTACCTGC AGGGCCGGTGTCTGGAGTGGCTCCAGAAATACCTGGAGATGGGGGAGGACACGCTGCAGC GCGCAGAGCCTCCAAAGACACATGTGACCTGCCACCCCAGCTCTGACCTGGGGGTCACCT TGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGG GCCAAGACCAGAGCCAGGACATGGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTC CAGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTG CAGCACGAGGGCCTGCAGGAGCCCCTCACCCTGAGATGGGACCCTCCTCAGCCCCCCGTC CCCATCGTGGGCATCATTGTTGGCCTGGTTCTCGTCCTGGTCGCTGGAGCCGTGGTGACT GGAGTTGTGATCTGGAGGAAGAAGCGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCT GCAGGCAGTGACAGTGCCCAGGGCTCCGATGTGTCCCTTACCAAGGATCCTAGAGTGTGA GACAGCTGCCTTGTGGGGACTGAGTGACACAGATTTGTTCACGTCCCACTTTGTGACTTC GGATCCCCTGCCTCCTGTTTCTGCAGCTGCCTCTGAAAGGGTCTGTGTTCCTATGAGCAT CATGAGAGGAGGTGGGGACCCTGGCCCAGCCCTGCCCCCCACGTCCCCTCTTCACCCTGA CCTGTGTTCTCTTTCCTGATCCACTTTCCAGCTCCAACAAGTTGGGGGGAGGCAGGCGGC AATGGACCATCTCCATCCTTATCCTAAATTCATTGCCCTGACTGGTGACTGCGGGGAGGA GCCGAGGAGACACAGGAGGCCAAGGAAGGGAACTAGCCTGACGGCACAGTTCCAAAGGCA GGGTTCCTAACCAAGGGAAAAGAGCCTACCCACCGGCACAGTTCCAAGGGTAGGTTTAGA AATAGGGAAAGGGGCTTACCCGGTGGCACAGTTCCAAGGGCAAGTTATAAAAATAATGAG GCTCACCTGCTAACCTGACTACAACAGCAACAATAACAAAACGAAGGTTTTGCACAATAG TGCAAGAATAAAAATTGCTTCTTGGAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 643-809, - strand, RNAz p=0.996054 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 643-809, - strand, RNAz p=0.996054 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 4-271, gnl|bosTau2|chr23 (21180741-21180474) | |
| 4-271, gnl|Hg17|chr6 (30335574-30335841) | |
| 4-271, gnl|Mm7|chr17 (33571220-33571487) | |
| 304-554, gnl|bosTau2|chr20 (36655627-36655873) | |
| 304-554, gnl|Hg17|chr6 (31347071-31346829) | |
| 304-554, gnl|Mm7|chr17 (32077846-32077606) | |
| 604-809, gnl|bosTau2|chr23 (24252946-24252736) | |
| 604-809, gnl|Hg17|chr6 (26200946-26201156) | |
| 604-809, gnl|Mm7|chr13 (23071884-23071674) | |
| 820-947, gnl|bosTau2|chr23 (23047794-23047665) | |
| 820-947, gnl|canFam2|chr12 (3938333-3938669) | |
| 820-947, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 820-947, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 820-947, gnl|galGal2|chr16_random (271111-271395) | |
| 820-947, gnl|hg17|chr6 (30004005-30004367) | |
| 820-947, gnl|Hg17|chr6 (30004212-30004350) | |
| 820-947, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 820-947, gnl|mm7|chr17 (35139276-35138931) | |
| 820-947, gnl|Mm7|chr17 (34472588-34472477) | |
| 820-947, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 820-947, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 820-947, gnl|panTro1|chr5 (30480794-30481160) | |
| 820-947, gnl|rheMac2|chr4 (30877587-30877274) | |
| 820-947, gnl|rn3|chr20 (1647265-1647597) | |
| 1014-1239, gnl|bosTau2|chr23 (24592887-24593101) | |
| 1014-1239, gnl|Hg17|chr6 (30338262-30338510) | |
| 1014-1239, gnl|Mm7|chr17 (33574982-33575214) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-271, gnl|bosTau2|chr23 (21180741-21180474) | |
| 4-271, gnl|Hg17|chr6 (30335574-30335841) | |
| 4-271, gnl|Mm7|chr17 (33571220-33571487) | |
| 304-554, gnl|bosTau2|chr20 (36655627-36655873) | |
| 304-554, gnl|Hg17|chr6 (31347071-31346829) | |
| 304-554, gnl|Mm7|chr17 (32077846-32077606) | |
| 604-809, gnl|bosTau2|chr23 (24252946-24252736) | |
| 604-809, gnl|Hg17|chr6 (26200946-26201156) | |
| 604-809, gnl|Mm7|chr13 (23071884-23071674) | |
| 820-947, gnl|bosTau2|chr23 (23047794-23047665) | |
| 820-947, gnl|canFam2|chr12 (3938333-3938669) | |
| 820-947, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 820-947, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 820-947, gnl|galGal2|chr16_random (271111-271395) | |
| 820-947, gnl|hg17|chr6 (30004005-30004367) | |
| 820-947, gnl|Hg17|chr6 (30004212-30004350) | |
| 820-947, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 820-947, gnl|mm7|chr17 (35139276-35138931) | |
| 820-947, gnl|Mm7|chr17 (34472588-34472477) | |
| 820-947, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 820-947, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 820-947, gnl|panTro1|chr5 (30480794-30481160) | |
| 820-947, gnl|rheMac2|chr4 (30877587-30877274) | |
| 820-947, gnl|rn3|chr20 (1647265-1647597) | |
| 1014-1239, gnl|bosTau2|chr23 (24592887-24593101) | |
| 1014-1239, gnl|Hg17|chr6 (30338262-30338510) | |
| 1014-1239, gnl|Mm7|chr17 (33574982-33575214) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| med (0.697512) | |
| nlu (0.575043) | |
| lnt (0.569233) | |
| csp (0.483559) | |
| cag (0.453583) | |
| col (0.390016) | |
| duo (0.345602) | |
| jca (0.34188) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| che (0.272628) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| nco (0.161734) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cbl (0.114797) | |
| jej (0.0989218) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.697512) | |
| nlu (0.575043) | |
| lnt (0.569233) | |
| csp (0.483559) | |
| cag (0.453583) | |
| col (0.390016) | |
| duo (0.345602) | |
| jca (0.34188) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| che (0.272628) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| nco (0.161734) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cbl (0.114797) | |
| jej (0.0989218) |