Ss1.1-Utr1-UTR01E030088.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGTCATGGCTGCCGCCGCTGAGCTTAGTCGCGCGACCCTCGGTGACAGGAGCATGGA GCGGAGCTGCAGCCCCAACCTCTCCCAAGAGGTGGTCTGCGAAGTCTTTCGCTCCTTGCA TACCCTTGCTGGACAACTTAACCTCAGAGATGATGTGGTGAAAATTACAATCGATTGGAA CAAGCTCCAGAGCCTCTCGGCATTCCAGCCTGCTTTGCTCTTTAGTGCACTTGAGCAACA CGTTTTATATTTACAGCCTTTTTTAGCAAAACTTCAGCCTCTAATTAAAGAGGAGAATAC AGCTGTTGTTGAAGAGATAGGAAAAACAGAAACAGGGAACAAGAATGAAGTAAATGCCAA ATTTCCCATTGGTGACCTACAAGAGGAAGAAAAGCAAAAAGATTGTGATTTAGGAGATAT GAAAAAGACACAGATCCATTTTGATCCAGAAGTCGTTCAAATAAAAGCTGGAAAAGCAGA AATTGACAGACGAATATCTGCGTTTATTGAAAGAAAGCAAGCTGAAATCAATGAAAACAA CGTCAGGGAATTTTGCAATGTTATTGATTGTAATCAAGAAAATAGTTGTGCGAGAACTGA TGCCGTTTTTACTCCTTACCCTGGATTTAAAAGTCATGTAAAAGTTTCTAGAGTTGTGAA TACATATGGACCACAGACTAGACCTGAAGGAATTCAAGGATCAGGTCATAAACCTAACAG CATGCTCCGGGATTGTGGTAATCAGGCTGTGGAAGAACGACTGCAAAATATTGAGGCTCA CTTGCGGTTGCAGACAGGTGGTCCAGTGCCAAGAGACATTTATCAGAGAATTAAAAAACT TGAGGATAAAATCCTTGAATTGGAAGGCATCTCTCCTGAATATTTTCAATCTGTGAACTT TTCTGGGAAAAGAAGAAAAGTTCAACCACCTCAACAGAACTATTCACTGGCTGAACTTGA TGAGAAAATTAGTGCCCTCAAACAAGCTCTGCTCAGAAAATCAAGAGAAGCAGAACCCAT GGCAACTCATCACCTTCCCTGAAAAAAACTCCTCTTTGTCATTTTACTTTTTAGATACAT GTGTAGCTTATACTGCAGTTAGTTAAATGGGTATGCATTTATTAATGTAGACTTCCCTCT ATAGTCAGAATTTATTTTCATGTGAAGTCAACATCTGCTTTAAAGCAAGCAATCTTCAAA TATTCCAGTGTACTTTGAAATAGTTAATGCATACTAAAAATGGCATCGTTGGAATTTATT CCCTTCTGTTTTAAAGGAGGTATTTTGGGGAGTTCCCGTCGTGGCGCAGCAGAAATGAAT CCAACTGGGAACCATGAGGTTGCGGGTTCAATCCCTGGCCTTGCTCAGTGGGTTAACGAT CCGGCATTGCCGTGAGCTGTGGTGTAGGTTGCAGACGTGGCTTGAATCCCATGTTGCTGT GGCTGTGGCATAGGCCTGCAGCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGTCATGGCTGCCGCCGCTGAGCTTAGTCGCGCGACCCTCGGTGACAGGAGCATGGA GCGGAGCTGCAGCCCCAACCTCTCCCAAGAGGTGGTCTGCGAAGTCTTTCGCTCCTTGCA TACCCTTGCTGGACAACTTAACCTCAGAGATGATGTGGTGAAAATTACAATCGATTGGAA CAAGCTCCAGAGCCTCTCGGCATTCCAGCCTGCTTTGCTCTTTAGTGCACTTGAGCAACA CGTTTTATATTTACAGCCTTTTTTAGCAAAACTTCAGCCTCTAATTAAAGAGGAGAATAC AGCTGTTGTTGAAGAGATAGGAAAAACAGAAACAGGGAACAAGAATGAAGTAAATGCCAA ATTTCCCATTGGTGACCTACAAGAGGAAGAAAAGCAAAAAGATTGTGATTTAGGAGATAT GAAAAAGACACAGATCCATTTTGATCCAGAAGTCGTTCAAATAAAAGCTGGAAAAGCAGA AATTGACAGACGAATATCTGCGTTTATTGAAAGAAAGCAAGCTGAAATCAATGAAAACAA CGTCAGGGAATTTTGCAATGTTATTGATTGTAATCAAGAAAATAGTTGTGCGAGAACTGA TGCCGTTTTTACTCCTTACCCTGGATTTAAAAGTCATGTAAAAGTTTCTAGAGTTGTGAA TACATATGGACCACAGACTAGACCTGAAGGAATTCAAGGATCAGGTCATAAACCTAACAG CATGCTCCGGGATTGTGGTAATCAGGCTGTGGAAGAACGACTGCAAAATATTGAGGCTCA CTTGCGGTTGCAGACAGGTGGTCCAGTGCCAAGAGACATTTATCAGAGAATTAAAAAACT TGAGGATAAAATCCTTGAATTGGAAGGCATCTCTCCTGAATATTTTCAATCTGTGAACTT TTCTGGGAAAAGAAGAAAAGTTCAACCACCTCAACAGAACTATTCACTGGCTGAACTTGA TGAGAAAATTAGTGCCCTCAAACAAGCTCTGCTCAGAAAATCAAGAGAAGCAGAACCCAT GGCAACTCATCACCTTCCCTGAAAAAAACTCCTCTTTGTCATTTTACTTTTTAGATACAT GTGTAGCTTATACTGCAGTTAGTTAAATGGGTATGCATTTATTAATGTAGACTTCCCTCT ATAGTCAGAATTTATTTTCATGTGAAGTCAACATCTGCTTTAAAGCAAGCAATCTTCAAA TATTCCAGTGTACTTTGAAATAGTTAATGCATACTAAAAATGGCATCGTTGGAATTTATT CCCTTCTGTTTTAAAGGAGGTATTTTGGGGAGTTCCCGTCGTGGCGCAGCAGAAATGAAT CCAACTGGGAACCATGAGGTTGCGGGTTCAATCCCTGGCCTTGCTCAGTGGGTTAACGAT CCGGCATTGCCGTGAGCTGTGGTGTAGGTTGCAGACGTGGCTTGAATCCCATGTTGCTGT GGCTGTGGCATAGGCCTGCAGCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 137-256, gnl|bosTau2|chr21 (32472966-32472847) | |
| 137-256, gnl|canFam2|chr8 (17908812-17908941) | |
| 137-256, gnl|dasNov1|scaffold_34847 (6644-6515) | |
| 137-256, gnl|galGal2|chr5 (33398151-33398280) | |
| 137-256, gnl|hg17|chr14 (35855648-35855777) | |
| 137-256, gnl|Hg17|chr14 (35855769-35855650) | |
| 137-256, gnl|loxAfr1|scaffold_9538 (35565-35694) | |
| 137-256, gnl|mm7|chr12 (54272594-54272723) | |
| 137-256, gnl|Mm7|chr12 (54272715-54272596) | |
| 137-256, gnl|monDom2|scaffold_73 (1106207-1106078) | |
| 137-256, gnl|oryCun1|scaffold_195862 (3783-3912) | |
| 137-256, gnl|panTro1|chr15 (35183790-35183919) | |
| 137-256, gnl|rheMac2|chr7 (99285670-99285799) | |
| 137-256, gnl|rn3|chr6 (76744772-76744901) | |
| 137-256, gnl|xenTro1|scaffold_117 (1849717-1849588) | |
| 643-799, gnl|bosTau2|chr6 (27827796-27827640) | |
| 643-799, gnl|canFam2|chr8 (17903504-17903735) | |
| 643-799, gnl|dasNov1|scaffold_34847 (12003-11766) | |
| 643-799, gnl|echTel1|scaffold_277440 (50181-49948) | |
| 643-799, gnl|fr1|chrUn (246928818-246929037) | |
| 643-799, gnl|galGal2|chr5 (33392898-33393156) | |
| 643-799, gnl|hg17|chr14 (35850523-35850757) | |
| 643-799, gnl|Hg17|chr14 (35850684-35850528) | |
| 643-799, gnl|loxAfr1|scaffold_9538 (30086-30298) | |
| 643-799, gnl|mm7|chr12 (54267656-54267888) | |
| 643-799, gnl|Mm7|chr12 (54267817-54267661) | |
| 643-799, gnl|monDom2|scaffold_73 (1113137-1112902) | |
| 643-799, gnl|oryCun1|scaffold_177134 (66803-66593) | |
| 643-799, gnl|panTro1|chr15 (35178858-35179092) | |
| 643-799, gnl|rheMac2|chr7 (99280524-99280758) | |
| 643-799, gnl|rn3|chr6 (76739814-76740047) | |
| 643-799, gnl|xenTro1|scaffold_117 (1857738-1857556) | |
| 932-1287, gnl|bosTau2|chr6 (27818099-27817746) | |
| 932-1287, gnl|canFam2|chr8 (17890431-17890908) | |
| 932-1287, gnl|dasNov1|scaffold_25523 (13262-12867) | |
| 932-1287, gnl|echTel1|scaffold_314252 (44387-44816) | |
| 932-1287, gnl|galGal2|chr5 (33388679-33389147) | |
| 932-1287, gnl|hg17|chr14 (35837741-35838212) | |
| 932-1287, gnl|Hg17|chr14 (35838150-35837798) | |
| 932-1287, gnl|loxAfr1|scaffold_9538 (23847-24307) | |
| 932-1287, gnl|mm7|chr12 (54258830-54259213) | |
| 932-1287, gnl|Mm7|chr12 (54259162-54258875) | |
| 932-1287, gnl|monDom2|scaffold_73 (1154115-1153658) | |
| 932-1287, gnl|oryCun1|scaffold_177134 (76505-76105) | |
| 932-1287, gnl|panTro1|chr15 (35166679-35167150) | |
| 932-1287, gnl|rn3|chr6 (76731369-76731806) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-256, gnl|bosTau2|chr21 (32472966-32472847) | |
| 137-256, gnl|canFam2|chr8 (17908812-17908941) | |
| 137-256, gnl|dasNov1|scaffold_34847 (6644-6515) | |
| 137-256, gnl|galGal2|chr5 (33398151-33398280) | |
| 137-256, gnl|hg17|chr14 (35855648-35855777) | |
| 137-256, gnl|Hg17|chr14 (35855769-35855650) | |
| 137-256, gnl|loxAfr1|scaffold_9538 (35565-35694) | |
| 137-256, gnl|mm7|chr12 (54272594-54272723) | |
| 137-256, gnl|Mm7|chr12 (54272715-54272596) | |
| 137-256, gnl|monDom2|scaffold_73 (1106207-1106078) | |
| 137-256, gnl|oryCun1|scaffold_195862 (3783-3912) | |
| 137-256, gnl|panTro1|chr15 (35183790-35183919) | |
| 137-256, gnl|rheMac2|chr7 (99285670-99285799) | |
| 137-256, gnl|rn3|chr6 (76744772-76744901) | |
| 137-256, gnl|xenTro1|scaffold_117 (1849717-1849588) | |
| 643-799, gnl|bosTau2|chr6 (27827796-27827640) | |
| 643-799, gnl|canFam2|chr8 (17903504-17903735) | |
| 643-799, gnl|dasNov1|scaffold_34847 (12003-11766) | |
| 643-799, gnl|echTel1|scaffold_277440 (50181-49948) | |
| 643-799, gnl|fr1|chrUn (246928818-246929037) | |
| 643-799, gnl|galGal2|chr5 (33392898-33393156) | |
| 643-799, gnl|hg17|chr14 (35850523-35850757) | |
| 643-799, gnl|Hg17|chr14 (35850684-35850528) | |
| 643-799, gnl|loxAfr1|scaffold_9538 (30086-30298) | |
| 643-799, gnl|mm7|chr12 (54267656-54267888) | |
| 643-799, gnl|Mm7|chr12 (54267817-54267661) | |
| 643-799, gnl|monDom2|scaffold_73 (1113137-1112902) | |
| 643-799, gnl|oryCun1|scaffold_177134 (66803-66593) | |
| 643-799, gnl|panTro1|chr15 (35178858-35179092) | |
| 643-799, gnl|rheMac2|chr7 (99280524-99280758) | |
| 643-799, gnl|rn3|chr6 (76739814-76740047) | |
| 643-799, gnl|xenTro1|scaffold_117 (1857738-1857556) | |
| 932-1287, gnl|bosTau2|chr6 (27818099-27817746) | |
| 932-1287, gnl|canFam2|chr8 (17890431-17890908) | |
| 932-1287, gnl|dasNov1|scaffold_25523 (13262-12867) | |
| 932-1287, gnl|echTel1|scaffold_314252 (44387-44816) | |
| 932-1287, gnl|galGal2|chr5 (33388679-33389147) | |
| 932-1287, gnl|hg17|chr14 (35837741-35838212) | |
| 932-1287, gnl|Hg17|chr14 (35838150-35837798) | |
| 932-1287, gnl|loxAfr1|scaffold_9538 (23847-24307) | |
| 932-1287, gnl|mm7|chr12 (54258830-54259213) | |
| 932-1287, gnl|Mm7|chr12 (54259162-54258875) | |
| 932-1287, gnl|monDom2|scaffold_73 (1154115-1153658) | |
| 932-1287, gnl|oryCun1|scaffold_177134 (76505-76105) | |
| 932-1287, gnl|panTro1|chr15 (35166679-35167150) | |
| 932-1287, gnl|rn3|chr6 (76731369-76731806) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cty (0.41632) | |
| elu (0.385356) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| cst (0.140036) | |
| nca (0.136874) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.41632) | |
| elu (0.385356) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| cst (0.140036) | |
| nca (0.136874) |