Non-Coding RNA Search

Ss1.1-Utr1-UTR01E040089.5

Sequence:


               
               AGCGCGCGGCCCGGGATGCTGAGCCAGGCGCTACTGCGCCTCGCGTCCGCCGTCAGCCGC
AGGAGGATGAAGCTGCTGCTGGGCATCGCGCTGCTAGCCTACGTGGCCTCTGTTTGGGGC
AACTTGGTTAACATGAGGTCCCTCCAGGAGAATGGCGACCTCAGGATCGAAAGCAAGATT
GAAGAGATTGTTGAACCACTGAGAGAGAAAATCAGAGATTTGGAAAAAAGCTTCACCCAG
AAATACCCGCCAGTAAAATTTTTATCAGAGAAGGACCGTAAGAGAATTTTGATAACTGGA
GGTGCAGGGTTCGTGGGCTCCCACCTCACGGACAAGCTCATGATGGACGGCCATGAGGTG
ACCGTGGTGGACAACTTCTTCACGGGCAGAAAGAGGAACGTGGAGCACTGGATCGGCCAC
GAGAACTTCGAGCTTATCAACCATGACGTGGTGGAGCCCCTCTACATCGAAGTGGATCAG
ATCTACCACCTGGCCTCCCCAGCCTCGCCGCCCAACTACATGTACAACCCCATCAAGACG
CTCAAGACCAACACCATCGGGACGCTGAACATGCTGGGGCTGGCCAAGCGCGTCGGGGCG
CGTCTGCTCCTGGCTTCCACCTCGGAGGTGTACGGAGACCCTGAGGTCCACCCACAGACA
GAGGACTACTGGGGCCACGTGAATCCTGTAGGACCCCGAGCCTGCTATGATGAGGGCAAA
CGCGTCGCTGAGACCATGTGTTATGCCTACATGAAGCAGGAGGGTGTGGAGGTGCGTGTG
GCCAGAATCTTCAACACCTTCGGGCCTCGGATGCACATGAACGATGGCCGGGTGGTCAGC
AACTTCATCCTGCAGGCACTGCAGGGGGAGCCGCTCACGGTGTACGGATCCGGGTCGCAG
ACGCGGGCCTTCCAGTATGTCAGCGACCTGGTGAATGGCCTGGTGGCGCTCATGAACAGC
AACGTCAGCAGCCCCGTCAACCTGGGGAACCCAGAGGAACACACCATCCTAGAGTTCGCT
CAGCTAATTAAAAACCTCGTTGGCAGTGGGAGTGAAATTCAGTTTCTGTCTGAAGCCCAG
GATGACCCCCAGAAAAGGAAGCCGGACATCAAGAAAGCCAAGCTGATGCTGGGCTGGGAA
CCGGTGGTCCCGCTGGAAGAAGGGTTAAACAAAGCGATTCACTACTTCCGGAAAGAACTT
GAGTACCAGGCCAATAACCAGTACATCCCCAAACCAAAGCCCGCCAGAATAAAAAAAGGA
CGGACGCGCCATAACTGAACACTTTTACCTCTTGGGACAAGAGATGCCATTTCACACTTT
AATAGGATGTGTTTTTCTTTTTCGTTTTTTAAAGAAAGACTTAAAACAGGTGTTATGAAG
AACCAACTGGAAATCATTCTGAAGCTTGCTTTAAGAAATGGATGTGCCTAAAAACTCCCT
AAACAACTGCAGAATTTTGCCTTGCACTTTTTAAATCTGTCTTTTTATGTAACATAGCAT
CGATGCACCTCTGTGTGTTTTCAAGTTTTTTACCTTGCTGTGAGAACCTCTGTTGTGACT
GTCGTCGACAGTTTTATTTACTGGTTTCTTTGTGAAGCTGAAAAGGAACATTAAAATGGG
GTTTAAATGCTGATTTATTTATAACGTGGGTTCTTAGACGTTCTGCTATATGCATAGAGG
AGAAGCAGCAGCCTCCGCAGTATTGGCGGCGGGGGGGCTGGCACACCACATTTAATCTCG
GGCAGATAAAAGAATTCGGCTTGAGAGCTTTGTGTTTCTTTTCATACAGAATTTTCCCAA
GGTCCGGTTTTTAGTTGCAACCTTGACTTTGAGATTTTTCTGTTGGTTATCACGATCAAG
GATATTTGAAATCACTACTGTGTTGTGCTGCATACTGGGGGGAGGGGGACAGAGTTAACA
TATTCTTGGTTAACAGTGGTTAAATATGCTATTTTAATAAAATATTGAAACTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCGCGGCCCGGGATGCTGAGCCAGGCGCTACTGCGCCTCGCGTCCGCCGTCAGCCGC
AGGAGGATGAAGCTGCTGCTGGGCATCGCGCTGCTAGCCTACGTGGCCTCTGTTTGGGGC
AACTTGGTTAACATGAGGTCCCTCCAGGAGAATGGCGACCTCAGGATCGAAAGCAAGATT
GAAGAGATTGTTGAACCACTGAGAGAGAAAATCAGAGATTTGGAAAAAAGCTTCACCCAG
AAATACCCGCCAGTAAAATTTTTATCAGAGAAGGACCGTAAGAGAATTTTGATAACTGGA
GGTGCAGGGTTCGTGGGCTCCCACCTCACGGACAAGCTCATGATGGACGGCCATGAGGTG
ACCGTGGTGGACAACTTCTTCACGGGCAGAAAGAGGAACGTGGAGCACTGGATCGGCCAC
GAGAACTTCGAGCTTATCAACCATGACGTGGTGGAGCCCCTCTACATCGAAGTGGATCAG
ATCTACCACCTGGCCTCCCCAGCCTCGCCGCCCAACTACATGTACAACCCCATCAAGACG
CTCAAGACCAACACCATCGGGACGCTGAACATGCTGGGGCTGGCCAAGCGCGTCGGGGCG
CGTCTGCTCCTGGCTTCCACCTCGGAGGTGTACGGAGACCCTGAGGTCCACCCACAGACA
GAGGACTACTGGGGCCACGTGAATCCTGTAGGACCCCGAGCCTGCTATGATGAGGGCAAA
CGCGTCGCTGAGACCATGTGTTATGCCTACATGAAGCAGGAGGGTGTGGAGGTGCGTGTG
GCCAGAATCTTCAACACCTTCGGGCCTCGGATGCACATGAACGATGGCCGGGTGGTCAGC
AACTTCATCCTGCAGGCACTGCAGGGGGAGCCGCTCACGGTGTACGGATCCGGGTCGCAG
ACGCGGGCCTTCCAGTATGTCAGCGACCTGGTGAATGGCCTGGTGGCGCTCATGAACAGC
AACGTCAGCAGCCCCGTCAACCTGGGGAACCCAGAGGAACACACCATCCTAGAGTTCGCT
CAGCTAATTAAAAACCTCGTTGGCAGTGGGAGTGAAATTCAGTTTCTGTCTGAAGCCCAG
GATGACCCCCAGAAAAGGAAGCCGGACATCAAGAAAGCCAAGCTGATGCTGGGCTGGGAA
CCGGTGGTCCCGCTGGAAGAAGGGTTAAACAAAGCGATTCACTACTTCCGGAAAGAACTT
GAGTACCAGGCCAATAACCAGTACATCCCCAAACCAAAGCCCGCCAGAATAAAAAAAGGA
CGGACGCGCCATAACTGAACACTTTTACCTCTTGGGACAAGAGATGCCATTTCACACTTT
AATAGGATGTGTTTTTCTTTTTCGTTTTTTAAAGAAAGACTTAAAACAGGTGTTATGAAG
AACCAACTGGAAATCATTCTGAAGCTTGCTTTAAGAAATGGATGTGCCTAAAAACTCCCT
AAACAACTGCAGAATTTTGCCTTGCACTTTTTAAATCTGTCTTTTTATGTAACATAGCAT
CGATGCACCTCTGTGTGTTTTCAAGTTTTTTACCTTGCTGTGAGAACCTCTGTTGTGACT
GTCGTCGACAGTTTTATTTACTGGTTTCTTTGTGAAGCTGAAAAGGAACATTAAAATGGG
GTTTAAATGCTGATTTATTTATAACGTGGGTTCTTAGACGTTCTGCTATATGCATAGAGG
AGAAGCAGCAGCCTCCGCAGTATTGGCGGCGGGGGGGCTGGCACACCACATTTAATCTCG
GGCAGATAAAAGAATTCGGCTTGAGAGCTTTGTGTTTCTTTTCATACAGAATTTTCCCAA
GGTCCGGTTTTTAGTTGCAACCTTGACTTTGAGATTTTTCTGTTGGTTATCACGATCAAG
GATATTTGAAATCACTACTGTGTTGTGCTGCATACTGGGGGGAGGGGGACAGAGTTAACA
TATTCTTGGTTAACAGTGGTTAAATATGCTATTTTAATAAAATATTGAAACTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62822537|gb|AAY15085.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822537|gb|AAY15085.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1680-1795, - strand, RNAz p=0.8152

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1680-1795, - strand, RNAz p=0.8152

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               689-1967, gnl|bosTau2|chr18 (35936571-35937839)
               

               
               689-1967, gnl|Hg17|chr2 (106176095-106168295)
               

               
               689-1967, gnl|Mm7|chr17 (71479210-71478044)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               689-1967, gnl|bosTau2|chr18 (35936571-35937839)
               

               
               689-1967, gnl|Hg17|chr2 (106176095-106168295)
               

               
               689-1967, gnl|Mm7|chr17 (71479210-71478044)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               sme (0.305437)
               

               
               spl (0.286369)
               

               
               eep (0.245128)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               eep (0.245128)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	689-1967, gnl\|bosTau2\|chr18 (35936571-35937839)
	689-1967, gnl\|Hg17\|chr2 (106176095-106168295)
	689-1967, gnl\|Mm7\|chr17 (71479210-71478044)

	sme (0.305437)
	spl (0.286369)
	eep (0.245128)
	pgl (0.236967)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	mcp (0.170648)
	fhi (0.169578)
	fat (0.147427)
	pty (0.142714)
	csk (0.140746)
	nmm (0.132802)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)