Ss1.1-Utr1-UTR01E040096.5
|
CCCTGAGCCGCGGCGGGAGTGCAGCGCACAGCCTCGGGGAGCCCAGGCCAGGCAGCCATG
GCGGTGGAAGGAGGAATGAGATGTGTCAAGTTCTTGCTCTACGTTCTTCTGCTGGCCTTT
TGCGCCTGTGCCGTGGGACTGATCGCCGTGGGGATCTGGGTCCAGCTCGTGCTAAATCAG
ACCATTACCCAGGGGGCCACCCCTGGCTCCCTGTTGCCTGTGGTCATCATCGCAGTGGGT
GCCTTCCTCTTCCTGGTGGCCTTTGTGGGCTGCTGTGGGACCTGCAAGGAGAACTACTGT
CTTATGGTCACATTTGCCATCTTCCTGTCCCTTATCATGCTGGTGGAGGTGGCAGCCGCC
ATTGCTGGCTATGTGTTTAGAGACAAGGTGAAGGCAGAATTTAATAAGGACTTCCAGCAG
CAGATGCAGAATTATCCAAAAAACAACCACACAGCATTGATCCTGGACAGGATGCAGGAA
GATTTTAAGTGCTGCGGGGCAGCTAACTACACAGACTGGGAGAAGATCCTGCTGTCACCC
AAGCGAGTCCCGGACTCCTGCTGTGTCAATGTCACTCAGCACTGTGGAGTTAATTTCAAC
GTGAAGGAGATTCATAATGAGGGCTGTGTGGAAAAGATTGGGAGCTGGCTGAGGAGCAAT
GTGCTGGTGGCAGCTGCAGCAGCCCTGGGCATTGCCTTTGTGGAGGTCCTGGGTATTGTC
TTTGCTTGCTGCCTTGTGAAGAGCATCCGAAGTGGCTACGAGGTGATGTAGGGGGTCTGG
TCTCTTCAGCCCCCTCATCCAGGAGAGTGGGCTAGTATACTCCAGGTTTTTCAATTAAAC
GGATTATTTTTTCAGACCGAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCTGAGCCGCGGCGGGAGTGCAGCGCACAGCCTCGGGGAGCCCAGGCCAGGCAGCCATG
GCGGTGGAAGGAGGAATGAGATGTGTCAAGTTCTTGCTCTACGTTCTTCTGCTGGCCTTT
TGCGCCTGTGCCGTGGGACTGATCGCCGTGGGGATCTGGGTCCAGCTCGTGCTAAATCAG
ACCATTACCCAGGGGGCCACCCCTGGCTCCCTGTTGCCTGTGGTCATCATCGCAGTGGGT
GCCTTCCTCTTCCTGGTGGCCTTTGTGGGCTGCTGTGGGACCTGCAAGGAGAACTACTGT
CTTATGGTCACATTTGCCATCTTCCTGTCCCTTATCATGCTGGTGGAGGTGGCAGCCGCC
ATTGCTGGCTATGTGTTTAGAGACAAGGTGAAGGCAGAATTTAATAAGGACTTCCAGCAG
CAGATGCAGAATTATCCAAAAAACAACCACACAGCATTGATCCTGGACAGGATGCAGGAA
GATTTTAAGTGCTGCGGGGCAGCTAACTACACAGACTGGGAGAAGATCCTGCTGTCACCC
AAGCGAGTCCCGGACTCCTGCTGTGTCAATGTCACTCAGCACTGTGGAGTTAATTTCAAC
GTGAAGGAGATTCATAATGAGGGCTGTGTGGAAAAGATTGGGAGCTGGCTGAGGAGCAAT
GTGCTGGTGGCAGCTGCAGCAGCCCTGGGCATTGCCTTTGTGGAGGTCCTGGGTATTGTC
TTTGCTTGCTGCCTTGTGAAGAGCATCCGAAGTGGCTACGAGGTGATGTAGGGGGTCTGG
TCTCTTCAGCCCCCTCATCCAGGAGAGTGGGCTAGTATACTCCAGGTTTTTCAATTAAAC
GGATTATTTTTTCAGACCGAAAAA
|
|
gi|58569279|gb|AAW79025.1| |
Protein identifier
|
gi|58569279|gb|AAW79025.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
124-312, gnl|bosTau2|chr5 (35387444-35387256) |
|
124-312, gnl|canFam2|chr10 (3109090-3109305) |
|
124-312, gnl|dasNov1|scaffold_113644 (5331-5535) |
|
124-312, gnl|echTel1|scaffold_301039 (40984-40759) |
|
124-312, gnl|fr1|chrUn (283458248-283458466) |
|
124-312, gnl|hg17|chr12 (54407200-54407418) |
|
124-312, gnl|Hg17|chr12 (54407390-54407202) |
|
124-312, gnl|loxAfr1|scaffold_31168 (25411-25629) |
|
124-312, gnl|mm7|chr10 (128413412-128413197) |
|
124-312, gnl|Mm7|chr10 (128413220-128413408) |
|
124-312, gnl|oryCun1|scaffold_172883 (29932-29713) |
|
124-312, gnl|panTro1|chr10 (55632180-55632398) |
|
124-312, gnl|rheMac2|chr11 (52783247-52783465) |
|
124-312, gnl|rn3|chr7 (2210109-2209894) |
|
124-312, gnl|tetNig1|chr9 (8854297-8854515) |
| |
|
486-724, gnl|bosTau2|chr1 (56459938-56460176) |
|
486-724, gnl|Hg17|chr12 (54406310-54405864) |
|
486-724, gnl|Mm7|chr18 (50512959-50513200) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
124-312, gnl|bosTau2|chr5 (35387444-35387256) |
|
124-312, gnl|canFam2|chr10 (3109090-3109305) |
|
124-312, gnl|dasNov1|scaffold_113644 (5331-5535) |
|
124-312, gnl|echTel1|scaffold_301039 (40984-40759) |
|
124-312, gnl|fr1|chrUn (283458248-283458466) |
|
124-312, gnl|hg17|chr12 (54407200-54407418) |
|
124-312, gnl|Hg17|chr12 (54407390-54407202) |
|
124-312, gnl|loxAfr1|scaffold_31168 (25411-25629) |
|
124-312, gnl|mm7|chr10 (128413412-128413197) |
|
124-312, gnl|Mm7|chr10 (128413220-128413408) |
|
124-312, gnl|oryCun1|scaffold_172883 (29932-29713) |
|
124-312, gnl|panTro1|chr10 (55632180-55632398) |
|
124-312, gnl|rheMac2|chr11 (52783247-52783465) |
|
124-312, gnl|rn3|chr7 (2210109-2209894) |
|
124-312, gnl|tetNig1|chr9 (8854297-8854515) |
| |
|
486-724, gnl|bosTau2|chr1 (56459938-56460176) |
|
486-724, gnl|Hg17|chr12 (54406310-54405864) |
|
486-724, gnl|Mm7|chr18 (50512959-50513200) |
|
cov (2.2466) |
|
nep (1.65532) |
|
jca (1.36752) |
|
col (1.36505) |
|
cag (1.20956) |
|
ute (1.19506) |
|
nje (1.16144) |
|
nlu (1.15009) |
|
eje (1.08717) |
|
fli (1.0144) |
|
nco (0.970403) |
|
cly (0.965135) |
|
hyp (0.85702) |
|
eru (0.840336) |
|
amn (0.835422) |
|
nmm (0.796813) |
|
cli (0.764059) |
|
eep (0.735384) |
|
fbs (0.701385) |
|
med (0.697512) |
|
nca (0.684369) |
|
ese (0.632511) |
|
bla (0.621736) |
|
jej (0.593531) |
|
pgl (0.592417) |
|
pty (0.570858) |
|
cst (0.560146) |
|
ebs (0.473205) |
|
che (0.408942) |
|
nbm (0.397298) |
|
ill (0.351185) |
|
duo (0.345602) |
|
csp (0.322373) |
|
eli (0.303628) |
|
ldo (0.291008) |
|
cga (0.279096) |
|
ste (0.270416) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
cov (2.2466) |
|
nep (1.65532) |
|
jca (1.36752) |
|
col (1.36505) |
|
cag (1.20956) |
|
ute (1.19506) |
|
nje (1.16144) |
|
nlu (1.15009) |
|
eje (1.08717) |
|
fli (1.0144) |
|
nco (0.970403) |
|
cly (0.965135) |
|
hyp (0.85702) |
|
eru (0.840336) |
|
amn (0.835422) |
|
nmm (0.796813) |
|
cli (0.764059) |
|
eep (0.735384) |
|
fbs (0.701385) |
|
med (0.697512) |
|
nca (0.684369) |
|
ese (0.632511) |
|
bla (0.621736) |
|
jej (0.593531) |
|
pgl (0.592417) |
|
pty (0.570858) |
|
cst (0.560146) |
|
ebs (0.473205) |
|
che (0.408942) |
|
nbm (0.397298) |
|
ill (0.351185) |
|
duo (0.345602) |
|
csp (0.322373) |
|
eli (0.303628) |
|
ldo (0.291008) |
|
cga (0.279096) |
|
ste (0.270416) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ecc (0.115035) |
|
cbl (0.114797) |
