Non-Coding RNA Search

Ss1.1-Utr1-UTR01E040099.5

Sequence:


               
               AGAACGCGGGCGGCGGATCCCAGCGCGGCTCTCTGGAGCCCGCTGCTGAGCAGCGCCCCG
GAGGGGCCGAGCAGGAGCGGCACCATGGATTCCTTCAAGGTGGTGCTGGAGGGGCCAGCA
CCTTGGGGCTTCCGGCTGCAGGGGGGCAAGGACTTCAATGTGCCCCTCTCCATCTCCCGG
CTCACTCCTGGAGGTAAAGCTGCACAGGCCGGTGTGGCAGTAGGTGACTGGGTGCTGAGC
ATCGATGGCGAGAATGCAGGAGGCCTCACACACATCGAAGCCCAGAATAAGATCCGTGCC
TGCGGGGAGCGCCTCAGCCTGGGTCTCAGCAGGGCCCAGCCAGCACAGAGTAAACCGCAG
AAGGCCCTGGCCCCTGCCGCGGACCCCCCGCGGTACACCTTTGTACCCAGCGCCTCCCTC
AACAAGACGGCCCGCCCCTTCGGGGCGCCCCCGCCCGCTGACAACGCCCCGCAGCAGAAT
GGACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATGGAGGACACG
GAGGACTGGCGGCCGCGGCCTGGGACAGGCCAGTCCCGTTCCTTCCGCATCCTCGCCCAC
CTCACGGGCACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAAAAATCAAGGGAA
AAGTATGTCCTGGAGCTGCAGAGCCCACGCTACACCCGCCTCCGGGACTGGCACCACCAG
CGCTCTGCCCACGTGCTCAACGTGCAGTCGTAGCCTGGCCCTCGCTGGCCGGCTGCCCTC
TGCGCCTCTCTCTTTCTATTCCTCCGCCCAGGGCACCCCACCTTGGTGCCTCCAGCTTCT
GCCTACCTCACCCATCCCTTTCCTGCCCCTGGACTGAGCCTCCTGCTGGCCTGGCCCTGG
CTACCCTCCTGGCACAGGGTCCAGCTCCATCTGACACTGCCTTCCCTCTTTGCCCTATGG
TACTGCTGTCTGCCAGGTCTGTGCTGGCTTGGGCATGAAAATAAACATCCTCGGCCCTGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACGCGGGCGGCGGATCCCAGCGCGGCTCTCTGGAGCCCGCTGCTGAGCAGCGCCCCG
GAGGGGCCGAGCAGGAGCGGCACCATGGATTCCTTCAAGGTGGTGCTGGAGGGGCCAGCA
CCTTGGGGCTTCCGGCTGCAGGGGGGCAAGGACTTCAATGTGCCCCTCTCCATCTCCCGG
CTCACTCCTGGAGGTAAAGCTGCACAGGCCGGTGTGGCAGTAGGTGACTGGGTGCTGAGC
ATCGATGGCGAGAATGCAGGAGGCCTCACACACATCGAAGCCCAGAATAAGATCCGTGCC
TGCGGGGAGCGCCTCAGCCTGGGTCTCAGCAGGGCCCAGCCAGCACAGAGTAAACCGCAG
AAGGCCCTGGCCCCTGCCGCGGACCCCCCGCGGTACACCTTTGTACCCAGCGCCTCCCTC
AACAAGACGGCCCGCCCCTTCGGGGCGCCCCCGCCCGCTGACAACGCCCCGCAGCAGAAT
GGACAGCCGCTCCGACCGCTGGTCCCAGATGCCAGCAAGCAGCGGCTGATGGAGGACACG
GAGGACTGGCGGCCGCGGCCTGGGACAGGCCAGTCCCGTTCCTTCCGCATCCTCGCCCAC
CTCACGGGCACCGAGTTCATGCAAGACCCGGATGAGGAGCACCTGAAAAAATCAAGGGAA
AAGTATGTCCTGGAGCTGCAGAGCCCACGCTACACCCGCCTCCGGGACTGGCACCACCAG
CGCTCTGCCCACGTGCTCAACGTGCAGTCGTAGCCTGGCCCTCGCTGGCCGGCTGCCCTC
TGCGCCTCTCTCTTTCTATTCCTCCGCCCAGGGCACCCCACCTTGGTGCCTCCAGCTTCT
GCCTACCTCACCCATCCCTTTCCTGCCCCTGGACTGAGCCTCCTGCTGGCCTGGCCCTGG
CTACCCTCCTGGCACAGGGTCCAGCTCCATCTGACACTGCCTTCCCTCTTTGCCCTATGG
TACTGCTGTCTGCCAGGTCTGTGCTGGCTTGGGCATGAAAATAAACATCCTCGGCCCTGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5E9L1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E9L1_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               67-978, - strand, RNAz p=0.99807

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               67-978, - strand, RNAz p=0.99807

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               67-257, gnl|bosTau2|chr1 (62139029-62139223)
               

               
               67-257, gnl|Mm7|chr13 (54600337-54596905)
               


               
               362-482, gnl|bosTau2|chr7 (21765183-21765063)
               

               
               362-482, gnl|Hg17|chr5 (176851534-176851414)
               

               
               362-482, gnl|Mm7|chr13 (54596239-54596119)
               


               
               506-1034, gnl|bosTau2|chr1 (62139527-62140051)
               

               
               506-1034, gnl|Hg17|chr5 (176850730-176849850)
               

               
               506-1034, gnl|Mm7|chr13 (54596117-54594683)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-257, gnl|bosTau2|chr1 (62139029-62139223)
               

               
               67-257, gnl|Mm7|chr13 (54600337-54596905)
               


               
               362-482, gnl|bosTau2|chr7 (21765183-21765063)
               

               
               362-482, gnl|Hg17|chr5 (176851534-176851414)
               

               
               362-482, gnl|Mm7|chr13 (54596239-54596119)
               


               
               506-1034, gnl|bosTau2|chr1 (62139527-62140051)
               

               
               506-1034, gnl|Hg17|chr5 (176850730-176849850)
               

               
               506-1034, gnl|Mm7|chr13 (54596117-54594683)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ese (0.759013)
               

               
               mas (0.630915)
               

               
               ste (0.540833)
               

               
               csp (0.322373)
               

               
               ldo (0.291008)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.759013)
               

               
               mas (0.630915)
               

               
               ste (0.540833)
               

               
               csp (0.322373)
               

               
               ldo (0.291008)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	67-257, gnl\|bosTau2\|chr1 (62139029-62139223)
	67-257, gnl\|Mm7\|chr13 (54600337-54596905)

	362-482, gnl\|bosTau2\|chr7 (21765183-21765063)
	362-482, gnl\|Hg17\|chr5 (176851534-176851414)
	362-482, gnl\|Mm7\|chr13 (54596239-54596119)

	506-1034, gnl\|bosTau2\|chr1 (62139527-62140051)
	506-1034, gnl\|Hg17\|chr5 (176850730-176849850)
	506-1034, gnl\|Mm7\|chr13 (54596117-54594683)

	ese (0.759013)
	mas (0.630915)
	ste (0.540833)
	csp (0.322373)
	ldo (0.291008)
	eru (0.240096)
	nms (0.213858)
	fcc (0.197785)
	col (0.195008)
	nep (0.183925)
	fbs (0.175346)
	cag (0.151194)
	pty (0.142714)
	ute (0.132784)
	ebs (0.118301)
	jca (0.11396)