Non-Coding RNA Search

Ss1.1-Utr1-UTR01E070094.5.5

Sequence:


               
               TTTTTTTTTTTTTTTCAAGCAAATGAATACTTTTATTAACATGGTAAATTTCTTTTTAAA
CACATGGTAGGGTTTTGACCTCAAATACTTGTCAGGTCTGCTGCTGAAATGAACTTATAG
CTAGACAACTTATGGATGTTGAAAGTACTTAGTCCCTATCCAGTTTAGGGTCCAAAACAG
ACAGCCCTTGCTTTTCTTCCCCAGACCTTCAAGGGCTTTTGCAAATATCGCTTTTATTTT
ATGCCCAGAATGCCTTAAAATGCATCAGGGTATTCTATCAATTATACAGAACACCAAGAC
CTATCTCATGTTCTATTCTCAGTTCCACGTCGAGTAAAGCTGAGTAAGGTTGTCCAAACA
AACTGACCAGACAGGTTACATCACACAGTGTGCCGCATAAAACTTACATTTTGAACAAAA
TACATCTCTCCTCCTTTGGTCTCACACAGAAATTAAAGTCCCCAAACAATACCATCCTCC
ACCCCTTCTGATTCATCAGTCCTAGCCAGATCAGCCCCATTCACATTCCCAGTAGAAGTC
TGGTCCCCTCTTCAGCTTCTTTAAAACTGCTGCATGGAGTCGTCTTCCAGAAATCATGCA
GTTCCTTCAGCACCTTCAGAGCTGGAGAACTCCAACTCTGAGTCTCATCCGTCACACACA
GACCCAAAGTTCCAGGAAGCTATCAGGTCACACAAGAAAGAGCAAAGCACCTCAAAAATT
TAGAAACAACAAAAGCCCAGGAACAAACGTGACTGCTGCAAGAGCTTACAATCTAGGCCC
TAATTCTTGCTCGTGAGAACGTTTTCCAAATAAAAGTTACCTCCCCAAACAAAAACATTT
AACAATCAAAAACTCATATTGAGGTCATTAACCACAGACCATAGCAGAAACGTAGTGTAA
GCGAGGACAAGAGTGTAGACAGAGGAAAAAAAGAGAAAACAAAAGGCTCTCTGGTTTCAG
CTTCTCCAGGGTGTCAGCCAATCTCCATCAGTGGACCAGAATCCATTGGCTGTAAACCGC
CGACCCGGCTTCAGGACGACTCGCTCTTCTCTATCCGCCGGACCAGCTCCACCAGCATCT
CTGCCATCTTCGCGATCTCCTTGGCCTTCTCCTCGGCCTTCTCGCACCTCTTGGTCCCCC
TGCCCTCGACCGCGTCGTCCGCGCTCTGAAGATGGTTGAGCGCGCTCTCCTCCGAGGCCT
CCACCTGCGTCTTGATCTGGATGAGCATATTGTCCATCTCCCACAGCTTGCTCCGGTTGC
GCAGGTACGCCCGCCCGTGCTCGCGGGTCAGCGCCGCGATGTCCTCCCGCATCTCGTTGA
TGACCGGGAGCAGGAACTGCTCGAAATCCTCCTCGGGCTCCAGCACCTCCACCTCCTCCG
GCTCCGCCAGCTCGACGATGTCCAGGGGCCGCATCTCCTCCCGCTGTTCCGGAACCGCAG
GAGCCGAGTCGGGAGCTGAGAAGCGGAGGACAAAATCTATGCTTACCGACACACTTCCAG
AATATTCTCTCAAACTTTTACCCCGTTTAAACTTTTCGCCTCAGAGCAGCCACGGAATCA
AGCGACTTACGAGCTGAGAAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTCAAGCAAATGAATACTTTTATTAACATGGTAAATTTCTTTTTAAA
CACATGGTAGGGTTTTGACCTCAAATACTTGTCAGGTCTGCTGCTGAAATGAACTTATAG
CTAGACAACTTATGGATGTTGAAAGTACTTAGTCCCTATCCAGTTTAGGGTCCAAAACAG
ACAGCCCTTGCTTTTCTTCCCCAGACCTTCAAGGGCTTTTGCAAATATCGCTTTTATTTT
ATGCCCAGAATGCCTTAAAATGCATCAGGGTATTCTATCAATTATACAGAACACCAAGAC
CTATCTCATGTTCTATTCTCAGTTCCACGTCGAGTAAAGCTGAGTAAGGTTGTCCAAACA
AACTGACCAGACAGGTTACATCACACAGTGTGCCGCATAAAACTTACATTTTGAACAAAA
TACATCTCTCCTCCTTTGGTCTCACACAGAAATTAAAGTCCCCAAACAATACCATCCTCC
ACCCCTTCTGATTCATCAGTCCTAGCCAGATCAGCCCCATTCACATTCCCAGTAGAAGTC
TGGTCCCCTCTTCAGCTTCTTTAAAACTGCTGCATGGAGTCGTCTTCCAGAAATCATGCA
GTTCCTTCAGCACCTTCAGAGCTGGAGAACTCCAACTCTGAGTCTCATCCGTCACACACA
GACCCAAAGTTCCAGGAAGCTATCAGGTCACACAAGAAAGAGCAAAGCACCTCAAAAATT
TAGAAACAACAAAAGCCCAGGAACAAACGTGACTGCTGCAAGAGCTTACAATCTAGGCCC
TAATTCTTGCTCGTGAGAACGTTTTCCAAATAAAAGTTACCTCCCCAAACAAAAACATTT
AACAATCAAAAACTCATATTGAGGTCATTAACCACAGACCATAGCAGAAACGTAGTGTAA
GCGAGGACAAGAGTGTAGACAGAGGAAAAAAAGAGAAAACAAAAGGCTCTCTGGTTTCAG
CTTCTCCAGGGTGTCAGCCAATCTCCATCAGTGGACCAGAATCCATTGGCTGTAAACCGC
CGACCCGGCTTCAGGACGACTCGCTCTTCTCTATCCGCCGGACCAGCTCCACCAGCATCT
CTGCCATCTTCGCGATCTCCTTGGCCTTCTCCTCGGCCTTCTCGCACCTCTTGGTCCCCC
TGCCCTCGACCGCGTCGTCCGCGCTCTGAAGATGGTTGAGCGCGCTCTCCTCCGAGGCCT
CCACCTGCGTCTTGATCTGGATGAGCATATTGTCCATCTCCCACAGCTTGCTCCGGTTGC
GCAGGTACGCCCGCCCGTGCTCGCGGGTCAGCGCCGCGATGTCCTCCCGCATCTCGTTGA
TGACCGGGAGCAGGAACTGCTCGAAATCCTCCTCGGGCTCCAGCACCTCCACCTCCTCCG
GCTCCGCCAGCTCGACGATGTCCAGGGGCCGCATCTCCTCCCGCTGTTCCGGAACCGCAG
GAGCCGAGTCGGGAGCTGAGAAGCGGAGGACAAAATCTATGCTTACCGACACACTTCCAG
AATATTCTCTCAAACTTTTACCCCGTTTAAACTTTTCGCCTCAGAGCAGCCACGGAATCA
AGCGACTTACGAGCTGAGAAGCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9Y605_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9Y605_HUMAN

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               2-183, gnl|bosTau2|chr21 (19888240-19888422)
               

               
               2-183, gnl|Hg17|chr4 (6762535-6762356)
               


               
               1016-1584, gnl|bosTau2|chr6 (68038187-68037619)
               

               
               1016-1584, gnl|Hg17|chr4 (6761059-6760494)
               

               
               1016-1584, gnl|Mm7|chr5 (35877595-35878119)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-183, gnl|bosTau2|chr21 (19888240-19888422)
               

               
               2-183, gnl|Hg17|chr4 (6762535-6762356)
               


               
               1016-1584, gnl|bosTau2|chr6 (68038187-68037619)
               

               
               1016-1584, gnl|Hg17|chr4 (6761059-6760494)
               

               
               1016-1584, gnl|Mm7|chr5 (35877595-35878119)

Expressed library(ies): 58 entry(ies)

More info

Expressed library(ies): 58 entry(ies)

Help | Less info


               
               amn (1.25313)
               

               
               spl (1.14548)
               

               
               bla (1.11912)
               

               
               hea (1.02249)
               

               
               fcc (0.988924)
               

               
               nlu (0.958405)
               

               
               tbr (0.770891)
               

               
               lun (0.752445)
               

               
               eep (0.735384)
               

               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               fhi (0.678311)
               

               
               cje (0.660939)
               

               
               nms (0.641574)
               

               
               sug (0.636456)
               

               
               ldo (0.582016)
               

               
               fce (0.543183)
               

               
               spc (0.453463)
               

               
               liv (0.438853)
               

               
               hyp (0.42851)
               

               
               ste (0.405625)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               eli (0.303628)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (1.25313)
               

               
               spl (1.14548)
               

               
               bla (1.11912)
               

               
               hea (1.02249)
               

               
               fcc (0.988924)
               

               
               nlu (0.958405)
               

               
               tbr (0.770891)
               

               
               lun (0.752445)
               

               
               eep (0.735384)
               

               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               fhi (0.678311)
               

               
               cje (0.660939)
               

               
               nms (0.641574)
               

               
               sug (0.636456)
               

               
               ldo (0.582016)
               

               
               fce (0.543183)
               

               
               spc (0.453463)
               

               
               liv (0.438853)
               

               
               hyp (0.42851)
               

               
               ste (0.405625)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               eli (0.303628)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	2-183, gnl\|bosTau2\|chr21 (19888240-19888422)
	2-183, gnl\|Hg17\|chr4 (6762535-6762356)

	1016-1584, gnl\|bosTau2\|chr6 (68038187-68037619)
	1016-1584, gnl\|Hg17\|chr4 (6761059-6760494)
	1016-1584, gnl\|Mm7\|chr5 (35877595-35878119)

	amn (1.25313)
	spl (1.14548)
	bla (1.11912)
	hea (1.02249)
	fcc (0.988924)
	nlu (0.958405)
	tbr (0.770891)
	lun (0.752445)
	eep (0.735384)
	ece (0.687916)
	nca (0.684369)
	fhi (0.678311)
	cje (0.660939)
	nms (0.641574)
	sug (0.636456)
	ldo (0.582016)
	fce (0.543183)
	spc (0.453463)
	liv (0.438853)
	hyp (0.42851)
	ste (0.405625)
	ute (0.398353)
	elu (0.385356)
	ebs (0.354904)
	fbs (0.350693)
	ecc (0.345105)
	mcp (0.341297)
	nco (0.323468)
	sme (0.305437)
	eli (0.303628)
	fat (0.294855)
	pty (0.285429)
	lnt (0.284616)
	ssp (0.271039)
	nmm (0.265604)
	ese (0.253004)
	tra (0.246184)
	eru (0.240096)
	pgl (0.236967)
	med (0.232504)
	tes (0.207814)
	jej (0.197844)
	aor (0.195274)
	nep (0.183925)
	mgm (0.180343)
	ill (0.175593)
	ton (0.1755)
	sin (0.174948)
	nje (0.16592)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	cov (0.132153)
	kid (0.129735)
	thg (0.126791)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)