Non-Coding RNA Search

Ss1.1-Utr1-UTR01E070100.5

Sequence:


               
               GCGAAACGAGCGAAGCGCGGGTGGCCGCTGCGGCAGGGCCGAAGGGACGCGCGGGCGGCG
GCGGCGTCGCCATGTCGCACGGCCACAGCCACGGCGGGAGCGGCTGCCGCTGTGCCGCCG
AACGGGAGGAGCCACCCGAGCAGCGCGGCCTGGCCTACGGCCTGTACCTGCGCATCGACC
TGGAGCGGCTGCAGTGCCTCAACGAGAGCCGTGAAGGCAGCGGTCGCGGCGTCTTCAAGC
CCTGGGAGGAGCGGACCGACCGCTCCAAGTTTGTTGAAAGTGATGCAGATGAAGAGCTTC
TGTTTAATATTCCATTCACAGGCAATGTCAAGCTCAAAGGCATCATTATAATGGGAGAAG
ATGATGACTCACACCCCTCTGAGATGAGACTGTACAAGAACATTCCACAGATGTCCTTTG
ATGATACAGATAGGGAGCCAGATCAGACCTTTAGTCTGAACCGGGATCTTACAGGAGAAT
TAGAGTATGCTACAAAAATTTCTCGTTTTTCAAATGTCTATCACCTTTCAATTCATATTT
CAAAAAACTTTGGAGCCGATACCACAAAGGTCTTTTATATTGGCCTGAGAGGAGAATGGA
CTGAGCTTCGCCGACATGAAGTGACCATCTGCAATTATGAAGCATCGGCCAACCCAGCTG
ACCACAGGGTCCATCAGGTTACCCCACAGACACACTTTATTTCCTAAGGGCTGGCCAAGG
CTCCTACAGAGGCGTTGTGTCAGTGAAGATATGTGACATCCTGTTGGGGAGGACAAAGAG
AGATGGGGCTCCAGAGAGAGTTGGCAGCTACAGCCTCTGCCAAGCTTTGTGTTTGGAGCT
TGCTGCAGAAACCTGGCCTATGGAAGACACCACACCCCCGGAAAGGCTTGTGTGGGCGCT
GAGGGACAATCGTGGTTCTCTAGGGGCCTGCAGAAATTGGGTCTTGGGCTGGTCAGCGTC
TGGTAGTCATGGATAATGCCTGCCTTTCCAGTTAATGTGGCCATGGGATTCCAAGTATCT
TGTTGCTTTGTGGCAGGATTTTTGTGTGACTTTTTTTTTTCTTAAAGTGGAGACTATTCC
TGGGCTGCATAAACTTTCTGAAGCCTCAGCATTGTGTTTGTATTAACCATCAGGAGGGTT
TCCAACTAGAAATACTTGTCCCTGCTTGCTCCTTCTCCCTGTCATCTTTCAACATTCTTG
TCAAGTTGCCCAGCTTGGAGTTGTCTGTCATTCAGTAGTGTCCCATGGTTATAGCTAGAA
GAGCAGGAATCACCTGATGATGCTTAATAGCTTGAGGAGAAGGTCTTTTTTCCTACTGCC
CAGGTAAGCAGTCTGAGGCGAGCAAGGGCATCATTTCTGTGTTTGTGGGTATGCTGGTCC
GGGTGAGATTGGGACTTAGGTAAGATTCTCCTTGGATATCCTTAATGTTTATTAGCTTCT
CACTAGTATTGTAAGCCCAGTGGCAGAATTTGGAAATCTCAGTTCTTCTGTTCATGGCTT
TTTATTCACTGTGATTAATAAGCTTCCTAATAAATCCTTGCCAGACTTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAAACGAGCGAAGCGCGGGTGGCCGCTGCGGCAGGGCCGAAGGGACGCGCGGGCGGCG
GCGGCGTCGCCATGTCGCACGGCCACAGCCACGGCGGGAGCGGCTGCCGCTGTGCCGCCG
AACGGGAGGAGCCACCCGAGCAGCGCGGCCTGGCCTACGGCCTGTACCTGCGCATCGACC
TGGAGCGGCTGCAGTGCCTCAACGAGAGCCGTGAAGGCAGCGGTCGCGGCGTCTTCAAGC
CCTGGGAGGAGCGGACCGACCGCTCCAAGTTTGTTGAAAGTGATGCAGATGAAGAGCTTC
TGTTTAATATTCCATTCACAGGCAATGTCAAGCTCAAAGGCATCATTATAATGGGAGAAG
ATGATGACTCACACCCCTCTGAGATGAGACTGTACAAGAACATTCCACAGATGTCCTTTG
ATGATACAGATAGGGAGCCAGATCAGACCTTTAGTCTGAACCGGGATCTTACAGGAGAAT
TAGAGTATGCTACAAAAATTTCTCGTTTTTCAAATGTCTATCACCTTTCAATTCATATTT
CAAAAAACTTTGGAGCCGATACCACAAAGGTCTTTTATATTGGCCTGAGAGGAGAATGGA
CTGAGCTTCGCCGACATGAAGTGACCATCTGCAATTATGAAGCATCGGCCAACCCAGCTG
ACCACAGGGTCCATCAGGTTACCCCACAGACACACTTTATTTCCTAAGGGCTGGCCAAGG
CTCCTACAGAGGCGTTGTGTCAGTGAAGATATGTGACATCCTGTTGGGGAGGACAAAGAG
AGATGGGGCTCCAGAGAGAGTTGGCAGCTACAGCCTCTGCCAAGCTTTGTGTTTGGAGCT
TGCTGCAGAAACCTGGCCTATGGAAGACACCACACCCCCGGAAAGGCTTGTGTGGGCGCT
GAGGGACAATCGTGGTTCTCTAGGGGCCTGCAGAAATTGGGTCTTGGGCTGGTCAGCGTC
TGGTAGTCATGGATAATGCCTGCCTTTCCAGTTAATGTGGCCATGGGATTCCAAGTATCT
TGTTGCTTTGTGGCAGGATTTTTGTGTGACTTTTTTTTTTCTTAAAGTGGAGACTATTCC
TGGGCTGCATAAACTTTCTGAAGCCTCAGCATTGTGTTTGTATTAACCATCAGGAGGGTT
TCCAACTAGAAATACTTGTCCCTGCTTGCTCCTTCTCCCTGTCATCTTTCAACATTCTTG
TCAAGTTGCCCAGCTTGGAGTTGTCTGTCATTCAGTAGTGTCCCATGGTTATAGCTAGAA
GAGCAGGAATCACCTGATGATGCTTAATAGCTTGAGGAGAAGGTCTTTTTTCCTACTGCC
CAGGTAAGCAGTCTGAGGCGAGCAAGGGCATCATTTCTGTGTTTGTGGGTATGCTGGTCC
GGGTGAGATTGGGACTTAGGTAAGATTCTCCTTGGATATCCTTAATGTTTATTAGCTTCT
CACTAGTATTGTAAGCCCAGTGGCAGAATTTGGAAATCTCAGTTCTTCTGTTCATGGCTT
TTTATTCACTGTGATTAATAAGCTTCCTAATAAATCCTTGCCAGACTTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56202547|emb|CAI23142.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56202547|emb|CAI23142.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               27-344, gnl|bosTau2|chr21 (31562254-31562582)
               

               
               27-344, gnl|Hg17|chr1 (23850270-23851690)
               

               
               27-344, gnl|Mm7|chr4 (135365620-135364425)
               


               
               378-1584, gnl|bosTau2|chr21 (31562581-31563757)
               

               
               378-1584, gnl|Hg17|chr1 (23851689-23860028)
               

               
               378-1584, gnl|Mm7|chr4 (135364426-135354039)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-344, gnl|bosTau2|chr21 (31562254-31562582)
               

               
               27-344, gnl|Hg17|chr1 (23850270-23851690)
               

               
               27-344, gnl|Mm7|chr4 (135365620-135364425)
               


               
               378-1584, gnl|bosTau2|chr21 (31562581-31563757)
               

               
               378-1584, gnl|Hg17|chr1 (23851689-23860028)
               

               
               378-1584, gnl|Mm7|chr4 (135364426-135354039)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

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               nbm (0.397298)
               

               
               fty (0.351679)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.397298)
               

               
               fty (0.351679)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	27-344, gnl\|bosTau2\|chr21 (31562254-31562582)
	27-344, gnl\|Hg17\|chr1 (23850270-23851690)
	27-344, gnl\|Mm7\|chr4 (135365620-135364425)

	378-1584, gnl\|bosTau2\|chr21 (31562581-31563757)
	378-1584, gnl\|Hg17\|chr1 (23851689-23860028)
	378-1584, gnl\|Mm7\|chr4 (135364426-135354039)

	nbm (0.397298)
	fty (0.351679)
	cte (0.29274)
	liv (0.292569)
	ldo (0.291008)
	fce (0.271592)
	ssp (0.271039)
	thg (0.253582)
	bla (0.248694)
	ecc (0.23007)
	spc (0.226732)
	fcc (0.197785)
	col (0.195008)
	nep (0.183925)
	sto (0.179824)
	fhi (0.169578)
	cje (0.165235)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)
	cag (0.151194)
	ski (0.146735)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	cty (0.10408)