Ss1.1-Utr1-UTR01E110085.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACATCAAATGTGGAGATGCTGCTACAGTTTCTCGAAGATCAAAATACTTACCCCAACT TTGAGAATCTGGCATACTGGCAAATCCAGTTCAACAACATAGCTGCTGTCATAGTATTTT TTGTCTGGATTAAGCTCTTCAAATTCATCAGCTTTAACAGGACCATGAGTCAGCTCTCCA CAACCATGTCTCGGTGTGCCAAAGACCTCTTTGGCTTTGCAATTATGTTCTTCATTATTT TCTTAGCATATGCCCAGTTGGCATACCTTGTCTTTGGCACTCAGGTTGATGACTTCAGCA CCTTCCAAGAGTGTATCTTCACTCAATTCCGTATCATTTTGGGTGATATCAACTTCGCAG AGATTGAGGAAGCTAATCGCGTTTTGGGACCAATTTATTTCACTACATTTGTGTTCTTTA CGTTCTTCATTCTCTTGAATATGTTTTTGGCCATCATCAATGATACTTACTCTGAAGTTA AATCTGATTTGGCCCAGCAGAAAGCTGAAATGGAACTCTCAGATCTTATCAGAAAGGGCT ACCATAAAGCCTTGGTCAAGCTAAAACTGAAAAAAAACACCGTGGATGACATTTCAGAGA GTCTGCGTCAAGGGGGCGGCAAGTTAAATTTCGATGAGCTTCGACAAGATCTCAAAGGGA AGGGCCATACGGATGCCGAGATTGAGGCAATATTCACAAAGTATGACCAAGACGGAGACC AAGAACTGACTGAACGTGAGCATCAGCAGATGCGAGACGACTTGGAAAAAGAGAGGGAGG ACCTGGACTTGGAGCACAGCTCTTTACCACGTCCCATGAGCAGCCGAAGCTTCCCCCGCA GCCTGGACGACTCTGAGGAGGACGATGACGACGACAGCGGTCACAGCTCCAGGAGGAGGG GGAGCATCTCCAGCGGGGTTTCTTACGAAGAGTTTCAAGTCCTGGTGAGACGGGTGGACC GGATGGAGCACTCCATTGGCAGCATCGTGTCCAAGATTGATGCAGTGATAGTGAAGCTGG AGATCATGGAGCGGAACAAACTGAAGAGAAGAGAGGTGCTGGGGAGGCTGCTGGACGGCG TGGCCGAGGATGAAAGGCTGGGTCGTGACAGTGAAATCCACAGGGAACAGATGGAACGGC TGGTACGAGAAGAGTTGGAGCGCTGGGAATCCGATGATGCGGCTTCCCAAATAAGTCATG GTTTGGGCACACCCGTGGGACTCAATGGTCAGCCTCGCCCCAGAAGCTCCCGCCCTTCTT CCTCCCAGTCTACAGAAGGAATGGAAGGTGGAGGTGGAAATGGCAGTGCCGATATCCACG TGTAGGACATGTGCTTTTAACGGTTTAGAAGGTGGGCGCGGTGGTTAACGAATCCGACTA GGAACCACGAGGTTGCGGGTTCGATCCCTGGCCTCGCTCAGGGGGTTAAGGATCCGGCGT TGCTGTGAGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACATCAAATGTGGAGATGCTGCTACAGTTTCTCGAAGATCAAAATACTTACCCCAACT TTGAGAATCTGGCATACTGGCAAATCCAGTTCAACAACATAGCTGCTGTCATAGTATTTT TTGTCTGGATTAAGCTCTTCAAATTCATCAGCTTTAACAGGACCATGAGTCAGCTCTCCA CAACCATGTCTCGGTGTGCCAAAGACCTCTTTGGCTTTGCAATTATGTTCTTCATTATTT TCTTAGCATATGCCCAGTTGGCATACCTTGTCTTTGGCACTCAGGTTGATGACTTCAGCA CCTTCCAAGAGTGTATCTTCACTCAATTCCGTATCATTTTGGGTGATATCAACTTCGCAG AGATTGAGGAAGCTAATCGCGTTTTGGGACCAATTTATTTCACTACATTTGTGTTCTTTA CGTTCTTCATTCTCTTGAATATGTTTTTGGCCATCATCAATGATACTTACTCTGAAGTTA AATCTGATTTGGCCCAGCAGAAAGCTGAAATGGAACTCTCAGATCTTATCAGAAAGGGCT ACCATAAAGCCTTGGTCAAGCTAAAACTGAAAAAAAACACCGTGGATGACATTTCAGAGA GTCTGCGTCAAGGGGGCGGCAAGTTAAATTTCGATGAGCTTCGACAAGATCTCAAAGGGA AGGGCCATACGGATGCCGAGATTGAGGCAATATTCACAAAGTATGACCAAGACGGAGACC AAGAACTGACTGAACGTGAGCATCAGCAGATGCGAGACGACTTGGAAAAAGAGAGGGAGG ACCTGGACTTGGAGCACAGCTCTTTACCACGTCCCATGAGCAGCCGAAGCTTCCCCCGCA GCCTGGACGACTCTGAGGAGGACGATGACGACGACAGCGGTCACAGCTCCAGGAGGAGGG GGAGCATCTCCAGCGGGGTTTCTTACGAAGAGTTTCAAGTCCTGGTGAGACGGGTGGACC GGATGGAGCACTCCATTGGCAGCATCGTGTCCAAGATTGATGCAGTGATAGTGAAGCTGG AGATCATGGAGCGGAACAAACTGAAGAGAAGAGAGGTGCTGGGGAGGCTGCTGGACGGCG TGGCCGAGGATGAAAGGCTGGGTCGTGACAGTGAAATCCACAGGGAACAGATGGAACGGC TGGTACGAGAAGAGTTGGAGCGCTGGGAATCCGATGATGCGGCTTCCCAAATAAGTCATG GTTTGGGCACACCCGTGGGACTCAATGGTCAGCCTCGCCCCAGAAGCTCCCGCCCTTCTT CCTCCCAGTCTACAGAAGGAATGGAAGGTGGAGGTGGAAATGGCAGTGCCGATATCCACG TGTAGGACATGTGCTTTTAACGGTTTAGAAGGTGGGCGCGGTGGTTAACGAATCCGACTA GGAACCACGAGGTTGCGGGTTCGATCCCTGGCCTCGCTCAGGGGGTTAAGGATCCGGCGT TGCTGTGAGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 172-316, - strand, RNAz p=0.982146 | |
| 196-316, - strand, RNAz p=0.997374 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 172-316, - strand, RNAz p=0.982146 | |
| 196-316, - strand, RNAz p=0.997374 |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 133-316, gnl|bosTau2|chr6 (15386440-15386623) | |
| 133-316, gnl|canFam2|chr32 (14378700-14378829) | |
| 133-316, gnl|danRer3|chr1 (49637781-49637652) | |
| 133-316, gnl|dasNov1|scaffold_82130 (951-1083) | |
| 133-316, gnl|echTel1|scaffold_175610 (9463-9334) | |
| 133-316, gnl|fr1|chrUn (214081053-214080924) | |
| 133-316, gnl|galGal2|chr4 (46232735-46232606) | |
| 133-316, gnl|hg17|chr4 (89334405-89334534) | |
| 133-316, gnl|Hg17|chr4 (89334415-89334598) | |
| 133-316, gnl|loxAfr1|scaffold_49885 (23850-23979) | |
| 133-316, gnl|mm7|chr5 (103679762-103679891) | |
| 133-316, gnl|Mm7|chr5 (103679772-103679955) | |
| 133-316, gnl|monDom2|scaffold_37 (15168570-15168441) | |
| 133-316, gnl|oryCun1|scaffold_211937 (48086-48215) | |
| 133-316, gnl|panTro1|chr3_random (1467560-1467689) | |
| 133-316, gnl|rheMac2|chr5 (81023230-81023361) | |
| 133-316, gnl|rn3|chr14 (6368810-6368682) | |
| 133-316, gnl|tetNig1|chr18 (6521455-6521584) | |
| 133-316, gnl|xenTro1|scaffold_424 (369530-369659) | |
| 524-659, gnl|bosTau2|chr6 (15393505-15393639) | |
| 524-659, gnl|canFam2|chr32 (14387060-14387146) | |
| 524-659, gnl|danRer3|chr1 (49635171-49635100) | |
| 524-659, gnl|dasNov1|scaffold_147138 (3811-3726) | |
| 524-659, gnl|fr1|chrUn (214080394-214080307) | |
| 524-659, gnl|galGal2|chr4 (46230524-46230429) | |
| 524-659, gnl|hg17|chr4 (89343682-89343775) | |
| 524-659, gnl|Hg17|chr4 (89343693-89343827) | |
| 524-659, gnl|loxAfr1|scaffold_49885 (32247-32332) | |
| 524-659, gnl|mm7|chr5 (103688949-103689052) | |
| 524-659, gnl|Mm7|chr5 (103688970-103689104) | |
| 524-659, gnl|monDom2|scaffold_37 (15160306-15160222) | |
| 524-659, gnl|oryCun1|scaffold_186406 (15503-15405) | |
| 524-659, gnl|panTro1|chr3_random (1476830-1476925) | |
| 524-659, gnl|rheMac2|chr5 (81032126-81032220) | |
| 524-659, gnl|rn3|chr14 (6356575-6356472) | |
| 524-659, gnl|tetNig1|chr18 (6522128-6522206) | |
| 524-659, gnl|xenTro1|scaffold_424 (372366-372459) | |
| 776-940, gnl|bosTau2|chr6 (15395334-15395498) | |
| 776-940, gnl|canFam2|chr32 (14389035-14389215) | |
| 776-940, gnl|danRer3|chr1 (49629674-49629494) | |
| 776-940, gnl|dasNov1|scaffold_147138 (1230-1050) | |
| 776-940, gnl|echTel1|scaffold_231933 (1550-1730) | |
| 776-940, gnl|fr1|chrUn (214079975-214079802) | |
| 776-940, gnl|galGal2|chr4 (46229866-46229682) | |
| 776-940, gnl|hg17|chr4 (89346223-89346403) | |
| 776-940, gnl|Hg17|chr4 (89346228-89346392) | |
| 776-940, gnl|loxAfr1|scaffold_101959 (3842-4022) | |
| 776-940, gnl|mm7|chr5 (103689705-103689885) | |
| 776-940, gnl|Mm7|chr5 (103689710-103689874) | |
| 776-940, gnl|monDom2|scaffold_37 (15157042-15156862) | |
| 776-940, gnl|oryCun1|scaffold_186406 (12212-12032) | |
| 776-940, gnl|panTro1|chr3_random (1479370-1479550) | |
| 776-940, gnl|rheMac2|chr5 (81034662-81034842) | |
| 776-940, gnl|rn3|chr14 (6355830-6355650) | |
| 776-940, gnl|tetNig1|chr18 (6522520-6522694) | |
| 776-940, gnl|xenTro1|scaffold_424 (375133-375316) | |
| 1087-1354, gnl|bosTau2|chr6 (15398940-15399207) | |
| 1087-1354, gnl|canFam2|chr32 (14395444-14395676) | |
| 1087-1354, gnl|danRer3|chr1 (49627547-49627330) | |
| 1087-1354, gnl|echTel1|scaffold_231933 (5822-6054) | |
| 1087-1354, gnl|fr1|chrUn (214079224-214079031) | |
| 1087-1354, gnl|galGal2|chr4 (46228368-46228129) | |
| 1087-1354, gnl|hg17|chr4 (89353756-89353986) | |
| 1087-1354, gnl|Hg17|chr4 (89353787-89354068) | |
| 1087-1354, gnl|loxAfr1|scaffold_101959 (7529-7764) | |
| 1087-1354, gnl|mm7|chr5 (103693956-103694190) | |
| 1087-1354, gnl|Mm7|chr5 (103693991-103694271) | |
| 1087-1354, gnl|monDom2|scaffold_37 (15154692-15154462) | |
| 1087-1354, gnl|oryCun1|scaffold_186406 (8758-8527) | |
| 1087-1354, gnl|panTro1|chr3_random (1486863-1487094) | |
| 1087-1354, gnl|rheMac2|chr5 (81042128-81042360) | |
| 1087-1354, gnl|rn3|chr14 (6351721-6351510) | |
| 1087-1354, gnl|tetNig1|chr18 (6522953-6523166) | |
| 1087-1354, gnl|xenTro1|scaffold_424 (376145-376375) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-316, gnl|bosTau2|chr6 (15386440-15386623) | |
| 133-316, gnl|canFam2|chr32 (14378700-14378829) | |
| 133-316, gnl|danRer3|chr1 (49637781-49637652) | |
| 133-316, gnl|dasNov1|scaffold_82130 (951-1083) | |
| 133-316, gnl|echTel1|scaffold_175610 (9463-9334) | |
| 133-316, gnl|fr1|chrUn (214081053-214080924) | |
| 133-316, gnl|galGal2|chr4 (46232735-46232606) | |
| 133-316, gnl|hg17|chr4 (89334405-89334534) | |
| 133-316, gnl|Hg17|chr4 (89334415-89334598) | |
| 133-316, gnl|loxAfr1|scaffold_49885 (23850-23979) | |
| 133-316, gnl|mm7|chr5 (103679762-103679891) | |
| 133-316, gnl|Mm7|chr5 (103679772-103679955) | |
| 133-316, gnl|monDom2|scaffold_37 (15168570-15168441) | |
| 133-316, gnl|oryCun1|scaffold_211937 (48086-48215) | |
| 133-316, gnl|panTro1|chr3_random (1467560-1467689) | |
| 133-316, gnl|rheMac2|chr5 (81023230-81023361) | |
| 133-316, gnl|rn3|chr14 (6368810-6368682) | |
| 133-316, gnl|tetNig1|chr18 (6521455-6521584) | |
| 133-316, gnl|xenTro1|scaffold_424 (369530-369659) | |
| 524-659, gnl|bosTau2|chr6 (15393505-15393639) | |
| 524-659, gnl|canFam2|chr32 (14387060-14387146) | |
| 524-659, gnl|danRer3|chr1 (49635171-49635100) | |
| 524-659, gnl|dasNov1|scaffold_147138 (3811-3726) | |
| 524-659, gnl|fr1|chrUn (214080394-214080307) | |
| 524-659, gnl|galGal2|chr4 (46230524-46230429) | |
| 524-659, gnl|hg17|chr4 (89343682-89343775) | |
| 524-659, gnl|Hg17|chr4 (89343693-89343827) | |
| 524-659, gnl|loxAfr1|scaffold_49885 (32247-32332) | |
| 524-659, gnl|mm7|chr5 (103688949-103689052) | |
| 524-659, gnl|Mm7|chr5 (103688970-103689104) | |
| 524-659, gnl|monDom2|scaffold_37 (15160306-15160222) | |
| 524-659, gnl|oryCun1|scaffold_186406 (15503-15405) | |
| 524-659, gnl|panTro1|chr3_random (1476830-1476925) | |
| 524-659, gnl|rheMac2|chr5 (81032126-81032220) | |
| 524-659, gnl|rn3|chr14 (6356575-6356472) | |
| 524-659, gnl|tetNig1|chr18 (6522128-6522206) | |
| 524-659, gnl|xenTro1|scaffold_424 (372366-372459) | |
| 776-940, gnl|bosTau2|chr6 (15395334-15395498) | |
| 776-940, gnl|canFam2|chr32 (14389035-14389215) | |
| 776-940, gnl|danRer3|chr1 (49629674-49629494) | |
| 776-940, gnl|dasNov1|scaffold_147138 (1230-1050) | |
| 776-940, gnl|echTel1|scaffold_231933 (1550-1730) | |
| 776-940, gnl|fr1|chrUn (214079975-214079802) | |
| 776-940, gnl|galGal2|chr4 (46229866-46229682) | |
| 776-940, gnl|hg17|chr4 (89346223-89346403) | |
| 776-940, gnl|Hg17|chr4 (89346228-89346392) | |
| 776-940, gnl|loxAfr1|scaffold_101959 (3842-4022) | |
| 776-940, gnl|mm7|chr5 (103689705-103689885) | |
| 776-940, gnl|Mm7|chr5 (103689710-103689874) | |
| 776-940, gnl|monDom2|scaffold_37 (15157042-15156862) | |
| 776-940, gnl|oryCun1|scaffold_186406 (12212-12032) | |
| 776-940, gnl|panTro1|chr3_random (1479370-1479550) | |
| 776-940, gnl|rheMac2|chr5 (81034662-81034842) | |
| 776-940, gnl|rn3|chr14 (6355830-6355650) | |
| 776-940, gnl|tetNig1|chr18 (6522520-6522694) | |
| 776-940, gnl|xenTro1|scaffold_424 (375133-375316) | |
| 1087-1354, gnl|bosTau2|chr6 (15398940-15399207) | |
| 1087-1354, gnl|canFam2|chr32 (14395444-14395676) | |
| 1087-1354, gnl|danRer3|chr1 (49627547-49627330) | |
| 1087-1354, gnl|echTel1|scaffold_231933 (5822-6054) | |
| 1087-1354, gnl|fr1|chrUn (214079224-214079031) | |
| 1087-1354, gnl|galGal2|chr4 (46228368-46228129) | |
| 1087-1354, gnl|hg17|chr4 (89353756-89353986) | |
| 1087-1354, gnl|Hg17|chr4 (89353787-89354068) | |
| 1087-1354, gnl|loxAfr1|scaffold_101959 (7529-7764) | |
| 1087-1354, gnl|mm7|chr5 (103693956-103694190) | |
| 1087-1354, gnl|Mm7|chr5 (103693991-103694271) | |
| 1087-1354, gnl|monDom2|scaffold_37 (15154692-15154462) | |
| 1087-1354, gnl|oryCun1|scaffold_186406 (8758-8527) | |
| 1087-1354, gnl|panTro1|chr3_random (1486863-1487094) | |
| 1087-1354, gnl|rheMac2|chr5 (81042128-81042360) | |
| 1087-1354, gnl|rn3|chr14 (6351721-6351510) | |
| 1087-1354, gnl|tetNig1|chr18 (6522953-6523166) | |
| 1087-1354, gnl|xenTro1|scaffold_424 (376145-376375) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| sug (0.127291) |