Non-Coding RNA Search

Ss1.1-Utr1-UTR01E110102.5

Sequence:


               
               GCTGATTCCTATATGTAGGGGTTAACGTTTGTTGTTTAGGGGGTTGGTTTTGTTTTTTTT
ATTTCGCTTCAAAATCTTGCAAAGGCAAAGACCTTGGCTCATTCCTTTACTTAACTGTCT
GGGGTTTCTGGGCAATGCACGCTTGGGCTTTTATTTTCTTGGAGTGTCTAGAATCCCTCC
CTCTCAGGGCTTGGCACAGCGAGGAGCTCTGCAGAGAACTCATCGTAGATGCCATGACAG
CAGTGGTCTCAGGGAAAGGACTTTGTCACGACATTTTTACTTGTGTGTGTTCTTTTCCTT
GGAAACTTGGCTTTCCTCCAGCCTGGCTCCTGCTGGGACATGAAGGCAGCGAGCAGACAT
GAGTGTCCAGCTGCCCCATCGCTGCACAGGGGCCCTCAGGACCGCGGCCAGGCATCCAGC
TCAGCCTTGAGGCACCTGAGACGTCTCTGGAGTTGGGAGCCGGGCCTCCCACCCCGCTTG
GGCCATGGCGAACAGGCAGCTGTCCCGTGGCATTTTGTTTCCAGCTATGGACTTGCCCTC
GGCCCTGGGGGAACGGTCTGTGGGGCCCAGCTCGTCCTCCCTGTCCCAGCTCCACTATCA
GCTCGGGGACGTCCTTGGCCTGGGGACAGGGCCCTTCCTTGTGCTCCTTTGTCCCGAGAA
GCTGCCTCATCCCTCCCAGGTGCAGAGAGCCCGTGCTAGCTGTCCCTCCTTCTGTACAAA
GCACCAGCAGATCTGAGCCTCTGCTGCCCGTGGGACAGAAACCAGGCAGCTTCCAGGCGT
TGGAAGGAGGCAGGACTTGGAAAATACCCTCCTTCCCAGCCCCTTGTCCATGCAGCAGCT
GAGCCCTCCCCAGACCCACGGACCCTATTGTAGGGACTCCGCCTTGACCTTGAGCCGCCC
GTGTGAACTCACCCCTGTCCTTTGGGGCTGGGTCATGCAGTTTACGTTTTTAAAGCTGGA
GACAGGAAGAATTGTGCCTTGTGTAATACTTGAGCTCACACTGACAACTTGGATGTAAAT
AGGTGCATTTCTACTTGATTTATTTAATAAAGCTCTATATAGTTTCTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGATTCCTATATGTAGGGGTTAACGTTTGTTGTTTAGGGGGTTGGTTTTGTTTTTTTT
ATTTCGCTTCAAAATCTTGCAAAGGCAAAGACCTTGGCTCATTCCTTTACTTAACTGTCT
GGGGTTTCTGGGCAATGCACGCTTGGGCTTTTATTTTCTTGGAGTGTCTAGAATCCCTCC
CTCTCAGGGCTTGGCACAGCGAGGAGCTCTGCAGAGAACTCATCGTAGATGCCATGACAG
CAGTGGTCTCAGGGAAAGGACTTTGTCACGACATTTTTACTTGTGTGTGTTCTTTTCCTT
GGAAACTTGGCTTTCCTCCAGCCTGGCTCCTGCTGGGACATGAAGGCAGCGAGCAGACAT
GAGTGTCCAGCTGCCCCATCGCTGCACAGGGGCCCTCAGGACCGCGGCCAGGCATCCAGC
TCAGCCTTGAGGCACCTGAGACGTCTCTGGAGTTGGGAGCCGGGCCTCCCACCCCGCTTG
GGCCATGGCGAACAGGCAGCTGTCCCGTGGCATTTTGTTTCCAGCTATGGACTTGCCCTC
GGCCCTGGGGGAACGGTCTGTGGGGCCCAGCTCGTCCTCCCTGTCCCAGCTCCACTATCA
GCTCGGGGACGTCCTTGGCCTGGGGACAGGGCCCTTCCTTGTGCTCCTTTGTCCCGAGAA
GCTGCCTCATCCCTCCCAGGTGCAGAGAGCCCGTGCTAGCTGTCCCTCCTTCTGTACAAA
GCACCAGCAGATCTGAGCCTCTGCTGCCCGTGGGACAGAAACCAGGCAGCTTCCAGGCGT
TGGAAGGAGGCAGGACTTGGAAAATACCCTCCTTCCCAGCCCCTTGTCCATGCAGCAGCT
GAGCCCTCCCCAGACCCACGGACCCTATTGTAGGGACTCCGCCTTGACCTTGAGCCGCCC
GTGTGAACTCACCCCTGTCCTTTGGGGCTGGGTCATGCAGTTTACGTTTTTAAAGCTGGA
GACAGGAAGAATTGTGCCTTGTGTAATACTTGAGCTCACACTGACAACTTGGATGTAAAT
AGGTGCATTTCTACTTGATTTATTTAATAAAGCTCTATATAGTTTCTTAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               461-561, + strand, RNAz p=0.63955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               461-561, + strand, RNAz p=0.63955

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024923, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024923, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               118-849, gnl|bosTau2|chr22 (46691896-46691164)
               

               
               118-849, gnl|Hg17|chr3 (13333914-13333024)
               


               
               860-1070, gnl|bosTau2|chr22 (46691096-46690884)
               

               
               860-1070, gnl|canFam2|chr20 (6638179-6638343)
               

               
               860-1070, gnl|dasNov1|scaffold_1227 (105138-104978)
               

               
               860-1070, gnl|hg17|chr3 (13332734-13332896)
               

               
               860-1070, gnl|Hg17|chr3 (13332939-13332735)
               

               
               860-1070, gnl|loxAfr1|scaffold_17761 (16967-16804)
               

               
               860-1070, gnl|mm7|chr6 (91095395-91095545)
               

               
               860-1070, gnl|monDom2|scaffold_5 (49192768-49192930)
               

               
               860-1070, gnl|oryCun1|scaffold_86323 (4186-4346)
               

               
               860-1070, gnl|panTro1|chr2 (13900135-13900298)
               

               
               860-1070, gnl|rheMac2|chr2 (47720612-47720449)
               

               
               860-1070, gnl|rn3|chr4 (125434096-125434244)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-849, gnl|bosTau2|chr22 (46691896-46691164)
               

               
               118-849, gnl|Hg17|chr3 (13333914-13333024)
               


               
               860-1070, gnl|bosTau2|chr22 (46691096-46690884)
               

               
               860-1070, gnl|canFam2|chr20 (6638179-6638343)
               

               
               860-1070, gnl|dasNov1|scaffold_1227 (105138-104978)
               

               
               860-1070, gnl|hg17|chr3 (13332734-13332896)
               

               
               860-1070, gnl|Hg17|chr3 (13332939-13332735)
               

               
               860-1070, gnl|loxAfr1|scaffold_17761 (16967-16804)
               

               
               860-1070, gnl|mm7|chr6 (91095395-91095545)
               

               
               860-1070, gnl|monDom2|scaffold_5 (49192768-49192930)
               

               
               860-1070, gnl|oryCun1|scaffold_86323 (4186-4346)
               

               
               860-1070, gnl|panTro1|chr2 (13900135-13900298)
               

               
               860-1070, gnl|rheMac2|chr2 (47720612-47720449)
               

               
               860-1070, gnl|rn3|chr4 (125434096-125434244)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               ill (0.175593)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ill (0.175593)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	118-849, gnl\|bosTau2\|chr22 (46691896-46691164)
	118-849, gnl\|Hg17\|chr3 (13333914-13333024)

	860-1070, gnl\|bosTau2\|chr22 (46691096-46690884)
	860-1070, gnl\|canFam2\|chr20 (6638179-6638343)
	860-1070, gnl\|dasNov1\|scaffold_1227 (105138-104978)
	860-1070, gnl\|hg17\|chr3 (13332734-13332896)
	860-1070, gnl\|Hg17\|chr3 (13332939-13332735)
	860-1070, gnl\|loxAfr1\|scaffold_17761 (16967-16804)
	860-1070, gnl\|mm7\|chr6 (91095395-91095545)
	860-1070, gnl\|monDom2\|scaffold_5 (49192768-49192930)
	860-1070, gnl\|oryCun1\|scaffold_86323 (4186-4346)
	860-1070, gnl\|panTro1\|chr2 (13900135-13900298)
	860-1070, gnl\|rheMac2\|chr2 (47720612-47720449)
	860-1070, gnl\|rn3\|chr4 (125434096-125434244)