Ss1.1-Utr1-UTR01E110107.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACAGTGATTCGGCCGCCGCGCCGGGGGGTGGGGGGGCTGTGCGGGACTCTTTTCTTTC GGACTGACCGCGGGGCAGCTGGGGAGCATGTCGACCCCGGCCCGGAGGAGACTTATGCGA GATTTCAAGCGATTGCAAGAGGACCCACCTGTGGGTGTCAGTGGCGCACCATCTGAAAAC AACATCATGCAGTGGAATGCAGTTATATTTGGACCAGAAGGGACACCCTTTGAAGATGGT ACTTTTAAACTAGTAATAGAATTTTCTGAAGAATATCCAAATAAACCGCCAACTGTTAGG TTTTTATCCAAAATGTTTCATCCAAATGTGTATGCTGATGGTAGCATATGTTTAGATATC CTTCAGAATAGATGGAGTCCAACTTATGATGTATCTTCTATCCTAACATCAATTCAGTCT CTGTTGGATGAACCAAATCCAAACAGTCCAGCCAATAGCCAGGCAGCACAGCTTTATCAG GAAAACAAACGAGAATATGAGAAGAGAGTTTCGGCCATTGTTGAACAAAGCTGGAATGAT TCATAATAGACAACTGGTCTGTTAATCTTTTTCATCATTGTTGTGTATAATTTACCTCTC AGTAGAAAGGCTAACAAATTTTAAGTGCCACAGGTTTTAAGGATTCTGCAGAGAAAAAAA AAAGTCCTTCAGTTTAGAACCTACAAAAGCTCGTGTATCTTGATTAATGTACTTTTTATT GCATGGTGTGAACTAAGTTATTGCTTACATAAATTTGTAATATATCCTGTTTGTATTTTT TTCCAAGTGTATAATGTTGGTGTGGAGTTTTCATGACAGAATATACACATTTTGTAAATC TGTACTTTTTTCAAATATTGAATGCCTTATTTTTGAATTCTTTAGATTTTTAAATTGGAG AAAAGCACTTAAAGTTTTTTATATATGAATATTACATGTAAAGCTGTTAAAATACATAAC TTCAGTGCAAGAGACTTTGTCACTTATTTCCTTATCTGAGCAGAAGGGGTTAATAAGTCT CTAGCTCTCCATCAATTGATAGTTTCTAATTTCAAAAAAAAGATTTATATTTTATCAAGA AATTTCTCAAATTTGATTCTAAACACCAATTCTAATCTCAAACTTTACTTTTTATGTTCC TATATTATTTTCAGTTGAGCAATTATAGACCTAACTGGTTTGATTCTGTCCAGCTCTGTA CTTAGGCCACTTGTTACTGTTTCTTCATGCACTACTTACTGTTAAACTGTAGCTTTTACG ATTCCACGTTTTGCACCGCCACCATGAGGATCTGGCATCTCCACCATGAGCAGAGAGCTG ATGTGATTTGCTGCTTGATAGCACTTTAAAAGATTTTTGATAACGAAGAAAGCAAAACCA TCAACATTTACCAAAAATTCATGCCCCACTATTAACAAAAAATAAGAATTTGTTGCGTTG GTTGAACAAGGCAGGTATTTGGAAGGTATCTTGATGTAATTTAAGTATTTGAAAACTGCC TTTTAATGCAATTGCATACCTGTTTATTCTGAGAACATGTTTTAATACCAGGGCCTGCTG AGTTGCTTTCTCTTGTGGAGATTTTTTTTTTTATCTCCTAAGTTGTATAAAAGTTGTACT GCATCTTAGTTTACTGGATAAACTTAAAACACGGTATTGTAGAAAGCTAATACAAAGCTA TCCTATGCCTTCAAATAGTACAGAAAATGGAAAATATACAAGTAAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACAGTGATTCGGCCGCCGCGCCGGGGGGTGGGGGGGCTGTGCGGGACTCTTTTCTTTC GGACTGACCGCGGGGCAGCTGGGGAGCATGTCGACCCCGGCCCGGAGGAGACTTATGCGA GATTTCAAGCGATTGCAAGAGGACCCACCTGTGGGTGTCAGTGGCGCACCATCTGAAAAC AACATCATGCAGTGGAATGCAGTTATATTTGGACCAGAAGGGACACCCTTTGAAGATGGT ACTTTTAAACTAGTAATAGAATTTTCTGAAGAATATCCAAATAAACCGCCAACTGTTAGG TTTTTATCCAAAATGTTTCATCCAAATGTGTATGCTGATGGTAGCATATGTTTAGATATC CTTCAGAATAGATGGAGTCCAACTTATGATGTATCTTCTATCCTAACATCAATTCAGTCT CTGTTGGATGAACCAAATCCAAACAGTCCAGCCAATAGCCAGGCAGCACAGCTTTATCAG GAAAACAAACGAGAATATGAGAAGAGAGTTTCGGCCATTGTTGAACAAAGCTGGAATGAT TCATAATAGACAACTGGTCTGTTAATCTTTTTCATCATTGTTGTGTATAATTTACCTCTC AGTAGAAAGGCTAACAAATTTTAAGTGCCACAGGTTTTAAGGATTCTGCAGAGAAAAAAA AAAGTCCTTCAGTTTAGAACCTACAAAAGCTCGTGTATCTTGATTAATGTACTTTTTATT GCATGGTGTGAACTAAGTTATTGCTTACATAAATTTGTAATATATCCTGTTTGTATTTTT TTCCAAGTGTATAATGTTGGTGTGGAGTTTTCATGACAGAATATACACATTTTGTAAATC TGTACTTTTTTCAAATATTGAATGCCTTATTTTTGAATTCTTTAGATTTTTAAATTGGAG AAAAGCACTTAAAGTTTTTTATATATGAATATTACATGTAAAGCTGTTAAAATACATAAC TTCAGTGCAAGAGACTTTGTCACTTATTTCCTTATCTGAGCAGAAGGGGTTAATAAGTCT CTAGCTCTCCATCAATTGATAGTTTCTAATTTCAAAAAAAAGATTTATATTTTATCAAGA AATTTCTCAAATTTGATTCTAAACACCAATTCTAATCTCAAACTTTACTTTTTATGTTCC TATATTATTTTCAGTTGAGCAATTATAGACCTAACTGGTTTGATTCTGTCCAGCTCTGTA CTTAGGCCACTTGTTACTGTTTCTTCATGCACTACTTACTGTTAAACTGTAGCTTTTACG ATTCCACGTTTTGCACCGCCACCATGAGGATCTGGCATCTCCACCATGAGCAGAGAGCTG ATGTGATTTGCTGCTTGATAGCACTTTAAAAGATTTTTGATAACGAAGAAAGCAAAACCA TCAACATTTACCAAAAATTCATGCCCCACTATTAACAAAAAATAAGAATTTGTTGCGTTG GTTGAACAAGGCAGGTATTTGGAAGGTATCTTGATGTAATTTAAGTATTTGAAAACTGCC TTTTAATGCAATTGCATACCTGTTTATTCTGAGAACATGTTTTAATACCAGGGCCTGCTG AGTTGCTTTCTCTTGTGGAGATTTTTTTTTTTATCTCCTAAGTTGTATAAAAGTTGTACT GCATCTTAGTTTACTGGATAAACTTAAAACACGGTATTGTAGAAAGCTAATACAAAGCTA TCCTATGCCTTCAAATAGTACAGAAAATGGAAAATATACAAGTAAATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1573-1689, - strand, RNAz p=0.824718 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1573-1689, - strand, RNAz p=0.824718 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-131, gnl|bosTau2|chr7 (31306318-31306188) | |
| 1-131, gnl|Hg17|chr5 (133735098-133735229) | |
| 1-131, gnl|Mm7|chr11 (51957180-51957050) | |
| 416-539, gnl|bosTau2|chrX (1036303-1036426) | |
| 416-539, gnl|canFam2|chrX (94683108-94683234) | |
| 416-539, gnl|danRer3|chr14 (54570109-54569984) | |
| 416-539, gnl|dasNov1|scaffold_118946 (7116-7242) | |
| 416-539, gnl|echTel1|scaffold_299444 (94487-94361) | |
| 416-539, gnl|fr1|chrUn (87442498-87442373) | |
| 416-539, gnl|galGal2|chr4 (16288055-16287929) | |
| 416-539, gnl|hg17|chrX (118498970-118499096) | |
| 416-539, gnl|Hg17|chrX (118498970-118499093) | |
| 416-539, gnl|loxAfr1|scaffold_35994 (15852-15978) | |
| 416-539, gnl|mm7|chrX (31642773-31642899) | |
| 416-539, gnl|Mm7|chrX (31642773-31642896) | |
| 416-539, gnl|monDom2|scaffold_156 (923874-924000) | |
| 416-539, gnl|oryCun1|scaffold_215340 (125522-125648) | |
| 416-539, gnl|panTro1|chr4 (140108055-140108181) | |
| 416-539, gnl|rheMac2|chrX (117852440-117852566) | |
| 416-539, gnl|rn3|chrX (7988454-7988328) | |
| 416-539, gnl|tetNig1|chr1 (4267658-4267533) | |
| 416-539, gnl|xenTro1|scaffold_263 (902123-902249) | |
| 1458-1728, gnl|bosTau2|chr5 (23625248-23625521) | |
| 1458-1728, gnl|Hg17|chr5 (133754844-133755111) | |
| 1458-1728, gnl|Mm7|chr11 (51942574-51942325) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-131, gnl|bosTau2|chr7 (31306318-31306188) | |
| 1-131, gnl|Hg17|chr5 (133735098-133735229) | |
| 1-131, gnl|Mm7|chr11 (51957180-51957050) | |
| 416-539, gnl|bosTau2|chrX (1036303-1036426) | |
| 416-539, gnl|canFam2|chrX (94683108-94683234) | |
| 416-539, gnl|danRer3|chr14 (54570109-54569984) | |
| 416-539, gnl|dasNov1|scaffold_118946 (7116-7242) | |
| 416-539, gnl|echTel1|scaffold_299444 (94487-94361) | |
| 416-539, gnl|fr1|chrUn (87442498-87442373) | |
| 416-539, gnl|galGal2|chr4 (16288055-16287929) | |
| 416-539, gnl|hg17|chrX (118498970-118499096) | |
| 416-539, gnl|Hg17|chrX (118498970-118499093) | |
| 416-539, gnl|loxAfr1|scaffold_35994 (15852-15978) | |
| 416-539, gnl|mm7|chrX (31642773-31642899) | |
| 416-539, gnl|Mm7|chrX (31642773-31642896) | |
| 416-539, gnl|monDom2|scaffold_156 (923874-924000) | |
| 416-539, gnl|oryCun1|scaffold_215340 (125522-125648) | |
| 416-539, gnl|panTro1|chr4 (140108055-140108181) | |
| 416-539, gnl|rheMac2|chrX (117852440-117852566) | |
| 416-539, gnl|rn3|chrX (7988454-7988328) | |
| 416-539, gnl|tetNig1|chr1 (4267658-4267533) | |
| 416-539, gnl|xenTro1|scaffold_263 (902123-902249) | |
| 1458-1728, gnl|bosTau2|chr5 (23625248-23625521) | |
| 1458-1728, gnl|Hg17|chr5 (133754844-133755111) | |
| 1458-1728, gnl|Mm7|chr11 (51942574-51942325) |
| Expressed library(ies): 61 entry(ies) | More info |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
| vin (1.99534) | |
| bfe (1.94815) | |
| isp (1.50376) | |
| ldo (1.26103) | |
| tbr (1.23343) | |
| lyg (1.19792) | |
| ski (1.17388) | |
| ret (1.1586) | |
| mga (1.12144) | |
| fco (1.10046) | |
| ssp (0.948638) | |
| sme (0.91631) | |
| lin (0.873617) | |
| tra (0.738552) | |
| cbe (0.717703) | |
| mgp (0.692042) | |
| fat (0.58971) | |
| liv (0.585137) | |
| spc (0.566829) | |
| ste (0.540833) | |
| sin (0.524843) | |
| rec (0.519211) | |
| cut (0.509771) | |
| spl (0.429553) | |
| amn (0.417711) | |
| tes (0.415628) | |
| nca (0.410621) | |
| sug (0.381874) | |
| mgm (0.360685) | |
| ton (0.351) | |
| nje (0.33184) | |
| cty (0.31224) | |
| nbm (0.297974) | |
| eje (0.296501) | |
| csk (0.281492) | |
| ute (0.265569) | |
| cbr (0.255951) | |
| ese (0.253004) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jej (0.0989218) |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (1.99534) | |
| bfe (1.94815) | |
| isp (1.50376) | |
| ldo (1.26103) | |
| tbr (1.23343) | |
| lyg (1.19792) | |
| ski (1.17388) | |
| ret (1.1586) | |
| mga (1.12144) | |
| fco (1.10046) | |
| ssp (0.948638) | |
| sme (0.91631) | |
| lin (0.873617) | |
| tra (0.738552) | |
| cbe (0.717703) | |
| mgp (0.692042) | |
| fat (0.58971) | |
| liv (0.585137) | |
| spc (0.566829) | |
| ste (0.540833) | |
| sin (0.524843) | |
| rec (0.519211) | |
| cut (0.509771) | |
| spl (0.429553) | |
| amn (0.417711) | |
| tes (0.415628) | |
| nca (0.410621) | |
| sug (0.381874) | |
| mgm (0.360685) | |
| ton (0.351) | |
| nje (0.33184) | |
| cty (0.31224) | |
| nbm (0.297974) | |
| eje (0.296501) | |
| csk (0.281492) | |
| ute (0.265569) | |
| cbr (0.255951) | |
| ese (0.253004) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jej (0.0989218) |