Non-Coding RNA Search

Ss1.1-Utr1-UTR01F010094.5

Sequence:


               
               TGAAATTCAGTGTTTACCACGGCTCAAGGACACCCAACCTGGGGCCGGTCGTCTTTGGTT
TTCAAGTGAAAATGCTTTGTACAACTGAGGAGTTACGGCAAAGTGTTAATCAGGGGTCCA
GGGAGTGAGTTGAAGAGATGGAGTTGAGAGTATTTGCAGCCAGAGGGCTGCAGGGTAGAT
TGGGGGGGGCCAAGCCCTCTGAGCACTTAGGAAGGGTGTGTGTGCTCCAGCCTGAGCCCT
GTAGCTGCCTCCCTCCAGGCCTGCAGGGGCAGAACGCCCGCCACCAACTGTGAACGTGCT
TACCGCCCACTGAAGAATCCCTCTGCCCCCTGCCTGCTCTACTGTGTCAAGGTGAGCCAG
AGTCACCCTGGCCCTGGGTTCTCTGTCCCCGAGAAGCTGTCACTGTCAGTCATCCTCGTG
TCCCTCTAAAGAGAGCATTCACAGGGGTGGCAGTGTCCTGGTTTCCACTGCGAGGACAAG
GCCCCAAGACTTCCAGGGACTTGGCCCCACGGGGAGGACCTGGGCTTCTGGGTGCTTGGG
CTGAGGTTGTGCGGGAAGTCCACATCCTAGAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAATTCAGTGTTTACCACGGCTCAAGGACACCCAACCTGGGGCCGGTCGTCTTTGGTT
TTCAAGTGAAAATGCTTTGTACAACTGAGGAGTTACGGCAAAGTGTTAATCAGGGGTCCA
GGGAGTGAGTTGAAGAGATGGAGTTGAGAGTATTTGCAGCCAGAGGGCTGCAGGGTAGAT
TGGGGGGGGCCAAGCCCTCTGAGCACTTAGGAAGGGTGTGTGTGCTCCAGCCTGAGCCCT
GTAGCTGCCTCCCTCCAGGCCTGCAGGGGCAGAACGCCCGCCACCAACTGTGAACGTGCT
TACCGCCCACTGAAGAATCCCTCTGCCCCCTGCCTGCTCTACTGTGTCAAGGTGAGCCAG
AGTCACCCTGGCCCTGGGTTCTCTGTCCCCGAGAAGCTGTCACTGTCAGTCATCCTCGTG
TCCCTCTAAAGAGAGCATTCACAGGGGTGGCAGTGTCCTGGTTTCCACTGCGAGGACAAG
GCCCCAAGACTTCCAGGGACTTGGCCCCACGGGGAGGACCTGGGCTTCTGGGTGCTTGGG
CTGAGGTTGTGCGGGAAGTCCACATCCTAGAAAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-237, + strand, RNAz p=0.992239

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-237, + strand, RNAz p=0.992239

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_153367, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_153367, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-576, gnl|bosTau2|chr28 (27920524-27919941)
               

               
               1-576, gnl|Hg17|chr10 (80814560-80814024)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr28 (27920524-27919941)
               

               
               1-576, gnl|Hg17|chr10 (80814560-80814024)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	1-576, gnl\|bosTau2\|chr28 (27920524-27919941)
	1-576, gnl\|Hg17\|chr10 (80814560-80814024)