Non-Coding RNA Search

Ss1.1-Utr1-UTR01F020096.5

Sequence:


               
               AGACAGACCGACCTCGCCGGGATGGGGGGTATGGCTGCTCCACCAGGGTCCTGCGGGTGG
GAGAGTGGCTCCGCGACCACCAGTGGCCGGGGCTCCTCCGACTCCTGCTAGAGATGCTCT
TTCTCTCGTTTCATGCAGGCTCCTGGGAAAGCTGGTGCTGCTGCTGCTGCCTGATTCCAG
CCGACAGACCTTGGGACCGGGGCCGGCGCTGGCGGCTGGAGATGGCGGACACGAGATCCG
TGCATGAGACCAGATTTGAAGCGGCTGTGAAGGTGATCCAGAGTTTGCCGAAAAATGGTT
CATTCCAGCCAACAAATGAAATGATGCTCAAGTTCTATAGCTTCTATAAGCAGGCAACTG
AAGGACCCTGTAAACTATCAAGGCCTGGCTTCTGGGATCCTATCGGAAGATATAAATGGG
ATGCTTGGAATTCACTGGGTGAAATGACCAAAGAGGAAGCCATGATTGCATATGTTGAAG
AAATGAAGAAGATTCTTGAAACTATGCCGATGACTGAAAAAGTTGAAGAATTGCTACATG
TCATTGGTCCATTTTATGAAATTGTAGAGGACAAAAAGAGTGGCAGAAATTCTGATTTAA
CTTCAGATCTTGGTAATGTTCTGACTTCTACTCCAAATGCCAAAACTGTTAATGGAAAAG
CTGAAAGCAGTGATAGTGGAGCTGAATCTGAGGAAGAAGAGGCCCATGAAAAAGTGAAAG
GAGAAGAACAAAATGATAATGGTAATCTTTGACTGATGGGCTAACCGTTTTTACATTAAC
CAGGGTGAAACACTTTGGAGAGGTTTGGACTGCTTTGGCATCGTGTGTGATTAGTACACA
TGAAGGGATGTGAGTTGTTGACCATGTAGTCGGGTTTGTTGTGGACCAGAAGGCTCTGTT
AAGGAGTTCAGAGACGGTCAGCCTAATGCATCAGTGGATAGATGTTACTTGAAGGCTAAC
AAGAATAGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACAGACCGACCTCGCCGGGATGGGGGGTATGGCTGCTCCACCAGGGTCCTGCGGGTGG
GAGAGTGGCTCCGCGACCACCAGTGGCCGGGGCTCCTCCGACTCCTGCTAGAGATGCTCT
TTCTCTCGTTTCATGCAGGCTCCTGGGAAAGCTGGTGCTGCTGCTGCTGCCTGATTCCAG
CCGACAGACCTTGGGACCGGGGCCGGCGCTGGCGGCTGGAGATGGCGGACACGAGATCCG
TGCATGAGACCAGATTTGAAGCGGCTGTGAAGGTGATCCAGAGTTTGCCGAAAAATGGTT
CATTCCAGCCAACAAATGAAATGATGCTCAAGTTCTATAGCTTCTATAAGCAGGCAACTG
AAGGACCCTGTAAACTATCAAGGCCTGGCTTCTGGGATCCTATCGGAAGATATAAATGGG
ATGCTTGGAATTCACTGGGTGAAATGACCAAAGAGGAAGCCATGATTGCATATGTTGAAG
AAATGAAGAAGATTCTTGAAACTATGCCGATGACTGAAAAAGTTGAAGAATTGCTACATG
TCATTGGTCCATTTTATGAAATTGTAGAGGACAAAAAGAGTGGCAGAAATTCTGATTTAA
CTTCAGATCTTGGTAATGTTCTGACTTCTACTCCAAATGCCAAAACTGTTAATGGAAAAG
CTGAAAGCAGTGATAGTGGAGCTGAATCTGAGGAAGAAGAGGCCCATGAAAAAGTGAAAG
GAGAAGAACAAAATGATAATGGTAATCTTTGACTGATGGGCTAACCGTTTTTACATTAAC
CAGGGTGAAACACTTTGGAGAGGTTTGGACTGCTTTGGCATCGTGTGTGATTAGTACACA
TGAAGGGATGTGAGTTGTTGACCATGTAGTCGGGTTTGTTGTGGACCAGAAGGCTCTGTT
AAGGAGTTCAGAGACGGTCAGCCTAATGCATCAGTGGATAGATGTTACTTGAAGGCTAAC
AAGAATAGGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958299|emb|CAI16916.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958299|emb|CAI16916.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               116-299, gnl|bosTau2|chr13 (9366443-9366627)
               

               
               116-299, gnl|Hg17|chr10 (27569433-27569252)
               

               
               116-299, gnl|Mm7|chr2 (23076749-23076932)
               


               
               602-959, gnl|bosTau2|chr13 (9378858-9379222)
               

               
               602-959, gnl|Hg17|chr10 (27548797-27548437)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-299, gnl|bosTau2|chr13 (9366443-9366627)
               

               
               116-299, gnl|Hg17|chr10 (27569433-27569252)
               

               
               116-299, gnl|Mm7|chr2 (23076749-23076932)
               


               
               602-959, gnl|bosTau2|chr13 (9378858-9379222)
               

               
               602-959, gnl|Hg17|chr10 (27548797-27548437)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	116-299, gnl\|bosTau2\|chr13 (9366443-9366627)
	116-299, gnl\|Hg17\|chr10 (27569433-27569252)
	116-299, gnl\|Mm7\|chr2 (23076749-23076932)

	602-959, gnl\|bosTau2\|chr13 (9378858-9379222)
	602-959, gnl\|Hg17\|chr10 (27548797-27548437)