Ss1.1-Utr1-UTR01F060084.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCTTTGCCTTCCTCGCCAGGACCCAGAACACGATCACCATCAGCGAGTTGGGCACCGA GAGGACCTACAATGTTCTGGCCATTTTAGACTTCAACAGTGACCGGAAGCGAATGTCTAT AATTGTAAGAACCCCAGAAGGCAATATCAAGCTTTATTGCAAAGGTGCTGACACTGTAAT TTATGAACGGTTACATCGAATGAATCCTACAAAACAAGAGACGCAGGATGCTCTGGATAT CTTTGCAAGTGAGACTCTTAGAACCCTGTGCCTTTGCTATAAAGAAATTGAAGAAAAAGA ATTTGAAGAATGGAATAAAAAGTTTATGGCTGCCAGTATAGCCTCAAGCAACCGGGATGA AGCTCTGGACAAAGTATATGAGGAGATTGAAAAAGACTTAATTCTATTGGGAGCTACAGC TATTGAAGACAAGCTACAGGATGGCGTCCCAGAAACCATTTCAAAACTTGCAAAAGCTGA CATTAAGATCTGGGTGCTTACCGGAGACAAAAAGGAAACTGCTGAAAATATAGGGTTTGC CTGTGAACTTCTTACAGAAGATACCACTATCTGCTATGGAGAAGATATAAATGCTCTTCT TCATACAAGGATGGAAAACCAGAGGAACAGAGGGGGGGTCTATGCAAAATTTGTACCCCA AGTGCACGAACCATTTTTTCCATCTGGTGGAAACCGTGCCTTAATAATCACTGGTTCATG GTTGAATGAAATTCTTCTCGAGAAAAAGACCAAGAAAAGTAATATTTTGAAGCTGAAGTT CCCCAGGACGGAAGAAGAAAGACGAATGCGGACACAAAGCAAGAGGAGGCTGGAAGCTAA AAAAGAGCAGCAGCAGCAGAACTTTGTAGACCTGGCCTGCGAGTGCAGTGCGGTCATCTG CTGCCGGGTCACCCCCAAGCAGAAGGCCATGGTGGTGGACCTGGTGAAGAGGTACAAGAA AGCCATCACGCTGGCCATTGGAGACGGGGCCAATGATGTCAACATGATCAAAACTGCCCA CATTGGTGTCGGAATAAGTGGACAAGAAGGCATGCAGGCCGTCATGTCAAGTGACTATTC CTTTGCACAGTTCAGATACTTGCAGAGACTGCTGTTGGTGCACGGCCGGTGGTCTTACAT CAGGATGTGCAAGTTCCTACGATACTTCTTCTATAAAAACTTTGCATTTACTCTGGTTCA TTTCTGGTACTCCTTCTTCAATGGGTACTCTGCACAGACCGCGTACGAAGACTGGTTCAT CACCCTCTACAACGTGCTCTACTCCAGCCTGCCCGTGCTCCTCATGGGGCTGCTCGACCA GGATGTGAGTGACAAACTGAGCCTCCGCTTCCCTGGGTTATATGTGGTCGGACAAAGAGA CTTACTGTTCAACTATAGGAGATTCTTCGTGAGCTTGTTGCATGGCATTTTAACATCCAT GATCCTCTTCTTCATACCGTTTGGAGCTTATCTGCAAACTGTGGGACAGGATGGAGAAGC GCCTTCAGACTACCAATCTTTTGCTGTCACGATTGCCTCTGCTCTTATAATAACAGTCAA CTTCCAGATTGGCTTGGATACTTCTTATTGGACTTTTGTGAATGCTTTTTCAATTTTTGG AAGCATTGCACTTTATTTTGGCATCATGTTTGACTTTCATAGTGCTGGAATACATGTTCT CTTTCCGTCTGCATTTCAATTTACAGGCACAGCTTCCAATGCTCTGAGGCAGCCATACAT TTGGTTGACCATCATCTTGACCGTTGCTGTGTGCTTGCTGCCCGTTGTTGCCATACGTTT CCTGTCAATGACAATTTGGCCATCAGAAAGTGATAAGATCCAGAAGCATCGCAAGCGGTT AAAAGCCGAAGAGCAGTGGAAGCGGCGGCAAGTGTTCCGCCGGGGCGTGTCCACGCGGCG CTCAGCCTACGCTTTCTCCCACCAGCGGGGCTACGCGGACCTCATCTCCTCCGGGCGCAG CATCCGCAAGAAGCGTTCTCCCCTGGACGCTGTCATAGCCGATGGGACCGCAGAGTACAG GCGCACGGTGGAGAGCTGAGGCATCTGCCAAGGTGGCCTGGAGCAAAAGTGTCACACAGA GGAAATGTCTAATTTTTTGTATGAAACTCAGGACGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCTTTGCCTTCCTCGCCAGGACCCAGAACACGATCACCATCAGCGAGTTGGGCACCGA GAGGACCTACAATGTTCTGGCCATTTTAGACTTCAACAGTGACCGGAAGCGAATGTCTAT AATTGTAAGAACCCCAGAAGGCAATATCAAGCTTTATTGCAAAGGTGCTGACACTGTAAT TTATGAACGGTTACATCGAATGAATCCTACAAAACAAGAGACGCAGGATGCTCTGGATAT CTTTGCAAGTGAGACTCTTAGAACCCTGTGCCTTTGCTATAAAGAAATTGAAGAAAAAGA ATTTGAAGAATGGAATAAAAAGTTTATGGCTGCCAGTATAGCCTCAAGCAACCGGGATGA AGCTCTGGACAAAGTATATGAGGAGATTGAAAAAGACTTAATTCTATTGGGAGCTACAGC TATTGAAGACAAGCTACAGGATGGCGTCCCAGAAACCATTTCAAAACTTGCAAAAGCTGA CATTAAGATCTGGGTGCTTACCGGAGACAAAAAGGAAACTGCTGAAAATATAGGGTTTGC CTGTGAACTTCTTACAGAAGATACCACTATCTGCTATGGAGAAGATATAAATGCTCTTCT TCATACAAGGATGGAAAACCAGAGGAACAGAGGGGGGGTCTATGCAAAATTTGTACCCCA AGTGCACGAACCATTTTTTCCATCTGGTGGAAACCGTGCCTTAATAATCACTGGTTCATG GTTGAATGAAATTCTTCTCGAGAAAAAGACCAAGAAAAGTAATATTTTGAAGCTGAAGTT CCCCAGGACGGAAGAAGAAAGACGAATGCGGACACAAAGCAAGAGGAGGCTGGAAGCTAA AAAAGAGCAGCAGCAGCAGAACTTTGTAGACCTGGCCTGCGAGTGCAGTGCGGTCATCTG CTGCCGGGTCACCCCCAAGCAGAAGGCCATGGTGGTGGACCTGGTGAAGAGGTACAAGAA AGCCATCACGCTGGCCATTGGAGACGGGGCCAATGATGTCAACATGATCAAAACTGCCCA CATTGGTGTCGGAATAAGTGGACAAGAAGGCATGCAGGCCGTCATGTCAAGTGACTATTC CTTTGCACAGTTCAGATACTTGCAGAGACTGCTGTTGGTGCACGGCCGGTGGTCTTACAT CAGGATGTGCAAGTTCCTACGATACTTCTTCTATAAAAACTTTGCATTTACTCTGGTTCA TTTCTGGTACTCCTTCTTCAATGGGTACTCTGCACAGACCGCGTACGAAGACTGGTTCAT CACCCTCTACAACGTGCTCTACTCCAGCCTGCCCGTGCTCCTCATGGGGCTGCTCGACCA GGATGTGAGTGACAAACTGAGCCTCCGCTTCCCTGGGTTATATGTGGTCGGACAAAGAGA CTTACTGTTCAACTATAGGAGATTCTTCGTGAGCTTGTTGCATGGCATTTTAACATCCAT GATCCTCTTCTTCATACCGTTTGGAGCTTATCTGCAAACTGTGGGACAGGATGGAGAAGC GCCTTCAGACTACCAATCTTTTGCTGTCACGATTGCCTCTGCTCTTATAATAACAGTCAA CTTCCAGATTGGCTTGGATACTTCTTATTGGACTTTTGTGAATGCTTTTTCAATTTTTGG AAGCATTGCACTTTATTTTGGCATCATGTTTGACTTTCATAGTGCTGGAATACATGTTCT CTTTCCGTCTGCATTTCAATTTACAGGCACAGCTTCCAATGCTCTGAGGCAGCCATACAT TTGGTTGACCATCATCTTGACCGTTGCTGTGTGCTTGCTGCCCGTTGTTGCCATACGTTT CCTGTCAATGACAATTTGGCCATCAGAAAGTGATAAGATCCAGAAGCATCGCAAGCGGTT AAAAGCCGAAGAGCAGTGGAAGCGGCGGCAAGTGTTCCGCCGGGGCGTGTCCACGCGGCG CTCAGCCTACGCTTTCTCCCACCAGCGGGGCTACGCGGACCTCATCTCCTCCGGGCGCAG CATCCGCAAGAAGCGTTCTCCCCTGGACGCTGTCATAGCCGATGGGACCGCAGAGTACAG GCGCACGGTGGAGAGCTGAGGCATCTGCCAAGGTGGCCTGGAGCAAAAGTGTCACACAGA GGAAATGTCTAATTTTTTGTATGAAACTCAGGACGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr24 (43034318-43034442) | |
| 1-125, gnl|canFam2|chr1 (21263606-21263362) | |
| 1-125, gnl|danRer3|chr17 (37754477-37754262) | |
| 1-125, gnl|dasNov1|scaffold_14939 (1806-2039) | |
| 1-125, gnl|echTel1|scaffold_288532 (114603-114848) | |
| 1-125, gnl|fr1|chrUn (254297384-254297612) | |
| 1-125, gnl|galGal2|chrUn (5180620-5180857) | |
| 1-125, gnl|hg17|chr18 (53493059-53493305) | |
| 1-125, gnl|Hg17|chr18 (53493188-53493064) | |
| 1-125, gnl|loxAfr1|scaffold_4675 (30850-30607) | |
| 1-125, gnl|mm7|chr18 (64945249-64945495) | |
| 1-125, gnl|Mm7|chr18 (64945378-64945254) | |
| 1-125, gnl|monDom2|scaffold_20 (44561715-44561471) | |
| 1-125, gnl|oryCun1|scaffold_175409 (76422-76187) | |
| 1-125, gnl|panTro1|chr17 (50383793-50384039) | |
| 1-125, gnl|rheMac2|chr18 (50930384-50930630) | |
| 1-125, gnl|rn3|chr18 (60853716-60853953) | |
| 1-125, gnl|tetNig1|chrUn_random (82531808-82532035) | |
| 1-125, gnl|xenTro1|scaffold_431 (6826-6591) | |
| 239-403, gnl|bosTau2|chr24 (43039039-43039203) | |
| 239-403, gnl|canFam2|chr1 (21267634-21267445) | |
| 239-403, gnl|danRer3|chr17 (37757043-37756860) | |
| 239-403, gnl|dasNov1|scaffold_17857 (40359-40528) | |
| 239-403, gnl|echTel1|scaffold_288532 (111758-111954) | |
| 239-403, gnl|fr1|chrUn (254296485-254296658) | |
| 239-403, gnl|galGal2|chrUn (5179075-5179279) | |
| 239-403, gnl|hg17|chr18 (53487519-53487716) | |
| 239-403, gnl|Hg17|chr18 (53487712-53487548) | |
| 239-403, gnl|loxAfr1|scaffold_4675 (35833-35636) | |
| 239-403, gnl|mm7|chr18 (64941399-64941595) | |
| 239-403, gnl|Mm7|chr18 (64941591-64941427) | |
| 239-403, gnl|monDom2|scaffold_20 (44567336-44567144) | |
| 239-403, gnl|oryCun1|scaffold_175409 (81684-81502) | |
| 239-403, gnl|panTro1|chr17 (50378187-50378384) | |
| 239-403, gnl|rheMac2|chr18 (50924546-50924743) | |
| 239-403, gnl|rn3|chr18 (60849735-60849929) | |
| 239-403, gnl|tetNig1|chrUn_random (82530823-82530996) | |
| 239-403, gnl|xenTro1|scaffold_431 (8520-8348) | |
| 404-515, gnl|bosTau2|chr24 (43039946-43040057) | |
| 404-515, gnl|canFam2|chr1 (21268480-21268383) | |
| 404-515, gnl|danRer3|chr17 (37758602-37758505) | |
| 404-515, gnl|dasNov1|scaffold_53706 (4013-3915) | |
| 404-515, gnl|echTel1|scaffold_288532 (110260-110357) | |
| 404-515, gnl|fr1|chrUn (254296240-254296337) | |
| 404-515, gnl|galGal2|chrUn (5178558-5178655) | |
| 404-515, gnl|hg17|chr18 (53486656-53486753) | |
| 404-515, gnl|Hg17|chr18 (53486770-53486659) | |
| 404-515, gnl|loxAfr1|scaffold_4675 (37241-37144) | |
| 404-515, gnl|mm7|chr18 (64940250-64940347) | |
| 404-515, gnl|Mm7|chr18 (64940364-64940253) | |
| 404-515, gnl|monDom2|scaffold_20 (44568267-44568171) | |
| 404-515, gnl|oryCun1|scaffold_175409 (82747-82650) | |
| 404-515, gnl|panTro1|chr17 (50377320-50377417) | |
| 404-515, gnl|rheMac2|chr18 (50923586-50923683) | |
| 404-515, gnl|rn3|chr18 (60848225-60848322) | |
| 404-515, gnl|tetNig1|chrUn_random (82530605-82530701) | |
| 404-515, gnl|xenTro1|scaffold_431 (9375-9278) | |
| 592-724, gnl|bosTau2|chr24 (43043387-43043519) | |
| 592-724, gnl|Hg17|chr18 (53480845-53480713) | |
| 592-724, gnl|Mm7|chr18 (64934536-64934404) | |
| 920-1095, gnl|bosTau2|chr12 (16845520-16845695) | |
| 920-1095, gnl|Hg17|chr13 (25241197-25241372) | |
| 920-1095, gnl|Mm7|chr14 (54729122-54728947) | |
| 1320-1567, gnl|bosTau2|chr24 (43050821-43051068) | |
| 1320-1567, gnl|Hg17|chr18 (53470961-53470714) | |
| 1320-1567, gnl|Mm7|chr18 (64927691-64927444) | |
| 1836-2111, gnl|bosTau2|chr24 (43054833-43055110) | |
| 1836-2111, gnl|Hg17|chr18 (53466944-53466676) | |
| 1836-2111, gnl|Mm7|chr18 (64919979-64919695) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr24 (43034318-43034442) | |
| 1-125, gnl|canFam2|chr1 (21263606-21263362) | |
| 1-125, gnl|danRer3|chr17 (37754477-37754262) | |
| 1-125, gnl|dasNov1|scaffold_14939 (1806-2039) | |
| 1-125, gnl|echTel1|scaffold_288532 (114603-114848) | |
| 1-125, gnl|fr1|chrUn (254297384-254297612) | |
| 1-125, gnl|galGal2|chrUn (5180620-5180857) | |
| 1-125, gnl|hg17|chr18 (53493059-53493305) | |
| 1-125, gnl|Hg17|chr18 (53493188-53493064) | |
| 1-125, gnl|loxAfr1|scaffold_4675 (30850-30607) | |
| 1-125, gnl|mm7|chr18 (64945249-64945495) | |
| 1-125, gnl|Mm7|chr18 (64945378-64945254) | |
| 1-125, gnl|monDom2|scaffold_20 (44561715-44561471) | |
| 1-125, gnl|oryCun1|scaffold_175409 (76422-76187) | |
| 1-125, gnl|panTro1|chr17 (50383793-50384039) | |
| 1-125, gnl|rheMac2|chr18 (50930384-50930630) | |
| 1-125, gnl|rn3|chr18 (60853716-60853953) | |
| 1-125, gnl|tetNig1|chrUn_random (82531808-82532035) | |
| 1-125, gnl|xenTro1|scaffold_431 (6826-6591) | |
| 239-403, gnl|bosTau2|chr24 (43039039-43039203) | |
| 239-403, gnl|canFam2|chr1 (21267634-21267445) | |
| 239-403, gnl|danRer3|chr17 (37757043-37756860) | |
| 239-403, gnl|dasNov1|scaffold_17857 (40359-40528) | |
| 239-403, gnl|echTel1|scaffold_288532 (111758-111954) | |
| 239-403, gnl|fr1|chrUn (254296485-254296658) | |
| 239-403, gnl|galGal2|chrUn (5179075-5179279) | |
| 239-403, gnl|hg17|chr18 (53487519-53487716) | |
| 239-403, gnl|Hg17|chr18 (53487712-53487548) | |
| 239-403, gnl|loxAfr1|scaffold_4675 (35833-35636) | |
| 239-403, gnl|mm7|chr18 (64941399-64941595) | |
| 239-403, gnl|Mm7|chr18 (64941591-64941427) | |
| 239-403, gnl|monDom2|scaffold_20 (44567336-44567144) | |
| 239-403, gnl|oryCun1|scaffold_175409 (81684-81502) | |
| 239-403, gnl|panTro1|chr17 (50378187-50378384) | |
| 239-403, gnl|rheMac2|chr18 (50924546-50924743) | |
| 239-403, gnl|rn3|chr18 (60849735-60849929) | |
| 239-403, gnl|tetNig1|chrUn_random (82530823-82530996) | |
| 239-403, gnl|xenTro1|scaffold_431 (8520-8348) | |
| 404-515, gnl|bosTau2|chr24 (43039946-43040057) | |
| 404-515, gnl|canFam2|chr1 (21268480-21268383) | |
| 404-515, gnl|danRer3|chr17 (37758602-37758505) | |
| 404-515, gnl|dasNov1|scaffold_53706 (4013-3915) | |
| 404-515, gnl|echTel1|scaffold_288532 (110260-110357) | |
| 404-515, gnl|fr1|chrUn (254296240-254296337) | |
| 404-515, gnl|galGal2|chrUn (5178558-5178655) | |
| 404-515, gnl|hg17|chr18 (53486656-53486753) | |
| 404-515, gnl|Hg17|chr18 (53486770-53486659) | |
| 404-515, gnl|loxAfr1|scaffold_4675 (37241-37144) | |
| 404-515, gnl|mm7|chr18 (64940250-64940347) | |
| 404-515, gnl|Mm7|chr18 (64940364-64940253) | |
| 404-515, gnl|monDom2|scaffold_20 (44568267-44568171) | |
| 404-515, gnl|oryCun1|scaffold_175409 (82747-82650) | |
| 404-515, gnl|panTro1|chr17 (50377320-50377417) | |
| 404-515, gnl|rheMac2|chr18 (50923586-50923683) | |
| 404-515, gnl|rn3|chr18 (60848225-60848322) | |
| 404-515, gnl|tetNig1|chrUn_random (82530605-82530701) | |
| 404-515, gnl|xenTro1|scaffold_431 (9375-9278) | |
| 592-724, gnl|bosTau2|chr24 (43043387-43043519) | |
| 592-724, gnl|Hg17|chr18 (53480845-53480713) | |
| 592-724, gnl|Mm7|chr18 (64934536-64934404) | |
| 920-1095, gnl|bosTau2|chr12 (16845520-16845695) | |
| 920-1095, gnl|Hg17|chr13 (25241197-25241372) | |
| 920-1095, gnl|Mm7|chr14 (54729122-54728947) | |
| 1320-1567, gnl|bosTau2|chr24 (43050821-43051068) | |
| 1320-1567, gnl|Hg17|chr18 (53470961-53470714) | |
| 1320-1567, gnl|Mm7|chr18 (64927691-64927444) | |
| 1836-2111, gnl|bosTau2|chr24 (43054833-43055110) | |
| 1836-2111, gnl|Hg17|chr18 (53466944-53466676) | |
| 1836-2111, gnl|Mm7|chr18 (64919979-64919695) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| duo (0.172801) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pty (0.142714) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pty (0.142714) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cty (0.10408) |