Ss1.1-Utr1-UTR01F070087.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAAAAAAAAAAAAAAAAATCTGGGAAAGCGAGGGGTTGGGCTGAGCCGCACTTGGGA TACCGCGCGGACCATCTGCTAGGACTCGGGCCCGGCGTCTGCTCAGCCCAGGGGCCCCGC GGACTTACCACCATGGAACCGCGGCCTCGTCTCGGGGCCACCTGTTTGCTGGGCTTCAGT TTCCTGCTCCTCGTCTCTTCTGATGGACATGTTGGGCTTGGAAAGGGTTTTGGAGATCAC ATTCATTGGAGGACACTAGAAGATGGGAAGAAAGAAGCAGCTGCCAGTGGATTACCCCTG ATGGTGATTATCCATAAATCCTGGTGTGGAGCTTGCAAAGCTTTAAAGCCCAAATTTGCA GAATCTACAGAAATTTCAGAACTTGCCCATAATTTTGTTATGGTAAATCTTGAGGATGAA GAGGAACCCAAAGATGAAGATTTCAGCCCTGATGGGGGTTATATTCCACGAATCCTTTTC CTGGATCCCAGCGGCAAGGTGCGGCCTGAAATCATCAATGAGCATGGAAACCCCAGCTAC AAGTATTTCTACGTCAATGCTGAGCAAGTTGTTCAGGGAATGAAAGAAGCTCAGGAAAGG CTGACGGGTGATGCCTTCAGAGAGAAACATCTTGAAGATGAGTTGTAACCTCAGTGTATC CCTTCTTTCATCAAAGTTATTGTTCTGGAAGGAAAGCCGCAGGGGAGGGAATATTGAGGA ATCACTCAGAACGTTTAAATGGATCAGGAAACCTTGCTCCCGCCTACAGGGAAGGGGCCT CACTGCGGAGGAATTTCTGCCGCCAGAAGCTGGTTTCCATGTTCGTGGATCCAGCAGAGT GTGGCAGACATCCCTCTCCTGTCCCCTCTCACCAAAATGTCTCTCTGTCACTGAAGGTAA AGAATAACACCTTTTGACACAAAACTTGAGCCATTTGGAGTTTTACTCCTCACACTGCAG TATTTAAATCTTGTCATTTCCTTCTGCTTTACTCACCTTGGTGGTGAGAACAGAACAGAA GCATCTTTTCTATAATGTTAAAATTGCAGCAATAGCTTATCAGTTAAAACAACAAATGCT AAATGTAAATCAGTAATTCTACACCCCCCCCGCCCCCCCGCCCCCCCGCAAGGGGACCAG CCTGTTTCTTCTCTTTTTCTCCTGGGAGTAATCTTGGGCTTCTTCCTGAATCCCTGCATC TTCCTTCCTCTCCTCTGGCTTGGCTTCCCTGTTTGCACGCATGCACTTGCAGGATTGGCT GTGTGCGTGGACTCAGCCCCAGCTGGAAGTATGCTTTCCCCTGTTACTGTTGGAGAAAAC TCAAACCTTCAAGCCCTAGGTGGAGCCATTTTTGTCAAGTCGTCAACTGTATTTTTGTAC TGGGGTTAACAAAAAAAGTGAAAAAATATTAATTGTTCCATTACACTTTAATAAAACTTT GAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAAAAAAAAAAAAAAAAATCTGGGAAAGCGAGGGGTTGGGCTGAGCCGCACTTGGGA TACCGCGCGGACCATCTGCTAGGACTCGGGCCCGGCGTCTGCTCAGCCCAGGGGCCCCGC GGACTTACCACCATGGAACCGCGGCCTCGTCTCGGGGCCACCTGTTTGCTGGGCTTCAGT TTCCTGCTCCTCGTCTCTTCTGATGGACATGTTGGGCTTGGAAAGGGTTTTGGAGATCAC ATTCATTGGAGGACACTAGAAGATGGGAAGAAAGAAGCAGCTGCCAGTGGATTACCCCTG ATGGTGATTATCCATAAATCCTGGTGTGGAGCTTGCAAAGCTTTAAAGCCCAAATTTGCA GAATCTACAGAAATTTCAGAACTTGCCCATAATTTTGTTATGGTAAATCTTGAGGATGAA GAGGAACCCAAAGATGAAGATTTCAGCCCTGATGGGGGTTATATTCCACGAATCCTTTTC CTGGATCCCAGCGGCAAGGTGCGGCCTGAAATCATCAATGAGCATGGAAACCCCAGCTAC AAGTATTTCTACGTCAATGCTGAGCAAGTTGTTCAGGGAATGAAAGAAGCTCAGGAAAGG CTGACGGGTGATGCCTTCAGAGAGAAACATCTTGAAGATGAGTTGTAACCTCAGTGTATC CCTTCTTTCATCAAAGTTATTGTTCTGGAAGGAAAGCCGCAGGGGAGGGAATATTGAGGA ATCACTCAGAACGTTTAAATGGATCAGGAAACCTTGCTCCCGCCTACAGGGAAGGGGCCT CACTGCGGAGGAATTTCTGCCGCCAGAAGCTGGTTTCCATGTTCGTGGATCCAGCAGAGT GTGGCAGACATCCCTCTCCTGTCCCCTCTCACCAAAATGTCTCTCTGTCACTGAAGGTAA AGAATAACACCTTTTGACACAAAACTTGAGCCATTTGGAGTTTTACTCCTCACACTGCAG TATTTAAATCTTGTCATTTCCTTCTGCTTTACTCACCTTGGTGGTGAGAACAGAACAGAA GCATCTTTTCTATAATGTTAAAATTGCAGCAATAGCTTATCAGTTAAAACAACAAATGCT AAATGTAAATCAGTAATTCTACACCCCCCCCGCCCCCCCGCCCCCCCGCAAGGGGACCAG CCTGTTTCTTCTCTTTTTCTCCTGGGAGTAATCTTGGGCTTCTTCCTGAATCCCTGCATC TTCCTTCCTCTCCTCTGGCTTGGCTTCCCTGTTTGCACGCATGCACTTGCAGGATTGGCT GTGTGCGTGGACTCAGCCCCAGCTGGAAGTATGCTTTCCCCTGTTACTGTTGGAGAAAAC TCAAACCTTCAAGCCCTAGGTGGAGCCATTTTTGTCAAGTCGTCAACTGTATTTTTGTAC TGGGGTTAACAAAAAAAGTGAAAAAATATTAATTGTTCCATTACACTTTAATAAAACTTT GAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 86-1069, - strand, RNAz p=0.905703 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 86-1069, - strand, RNAz p=0.905703 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 7-228, gnl|bosTau2|chr3 (63674352-63674125) | |
| 7-228, gnl|canFam2|chr15 (12271407-12270447) | |
| 7-228, gnl|dasNov1|scaffold_892 (128249-129196) | |
| 7-228, gnl|echTel1|scaffold_300088 (27940-26886) | |
| 7-228, gnl|hg17|chr1 (52231879-52232902) | |
| 7-228, gnl|Hg17|chr1 (52232911-52232691) | |
| 7-228, gnl|loxAfr1|scaffold_10503 (63209-64239) | |
| 7-228, gnl|mm7|chr4 (108212079-108211095) | |
| 7-228, gnl|Mm7|chr4 (108211080-108211297) | |
| 7-228, gnl|oryCun1|scaffold_208108 (91355-90316) | |
| 7-228, gnl|panTro1|chr1 (50446079-50447105) | |
| 7-228, gnl|rheMac2|chr1 (54892057-54893066) | |
| 7-228, gnl|rn3|chr5 (130148840-130147861) | |
| 527-1108, gnl|bosTau2|chr3 (63796752-63797333) | |
| 527-1108, gnl|Hg17|chr1 (52198753-52198140) | |
| 527-1108, gnl|Mm7|chr4 (108237764-108238260) | |
| 1123-1449, gnl|bosTau2|chr3 (63797327-63797651) | |
| 1123-1449, gnl|canFam2|chr15 (12300198-12299695) | |
| 1123-1449, gnl|dasNov1|scaffold_11978 (78766-79287) | |
| 1123-1449, gnl|echTel1|scaffold_300088 (61075-60591) | |
| 1123-1449, gnl|hg17|chr1 (52197781-52198303) | |
| 1123-1449, gnl|Hg17|chr1 (52198148-52197824) | |
| 1123-1449, gnl|loxAfr1|scaffold_10503 (34703-35209) | |
| 1123-1449, gnl|mm7|chr4 (108238603-108238164) | |
| 1123-1449, gnl|Mm7|chr4 (108238261-108238559) | |
| 1123-1449, gnl|monDom2|scaffold_70 (1621890-1621462) | |
| 1123-1449, gnl|oryCun1|scaffold_142785 (3874-4383) | |
| 1123-1449, gnl|panTro1|chr1 (50411898-50412417) | |
| 1123-1449, gnl|rheMac2|chr1 (54858593-54859098) | |
| 1123-1449, gnl|rn3|chr5 (130172899-130172479) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-228, gnl|bosTau2|chr3 (63674352-63674125) | |
| 7-228, gnl|canFam2|chr15 (12271407-12270447) | |
| 7-228, gnl|dasNov1|scaffold_892 (128249-129196) | |
| 7-228, gnl|echTel1|scaffold_300088 (27940-26886) | |
| 7-228, gnl|hg17|chr1 (52231879-52232902) | |
| 7-228, gnl|Hg17|chr1 (52232911-52232691) | |
| 7-228, gnl|loxAfr1|scaffold_10503 (63209-64239) | |
| 7-228, gnl|mm7|chr4 (108212079-108211095) | |
| 7-228, gnl|Mm7|chr4 (108211080-108211297) | |
| 7-228, gnl|oryCun1|scaffold_208108 (91355-90316) | |
| 7-228, gnl|panTro1|chr1 (50446079-50447105) | |
| 7-228, gnl|rheMac2|chr1 (54892057-54893066) | |
| 7-228, gnl|rn3|chr5 (130148840-130147861) | |
| 527-1108, gnl|bosTau2|chr3 (63796752-63797333) | |
| 527-1108, gnl|Hg17|chr1 (52198753-52198140) | |
| 527-1108, gnl|Mm7|chr4 (108237764-108238260) | |
| 1123-1449, gnl|bosTau2|chr3 (63797327-63797651) | |
| 1123-1449, gnl|canFam2|chr15 (12300198-12299695) | |
| 1123-1449, gnl|dasNov1|scaffold_11978 (78766-79287) | |
| 1123-1449, gnl|echTel1|scaffold_300088 (61075-60591) | |
| 1123-1449, gnl|hg17|chr1 (52197781-52198303) | |
| 1123-1449, gnl|Hg17|chr1 (52198148-52197824) | |
| 1123-1449, gnl|loxAfr1|scaffold_10503 (34703-35209) | |
| 1123-1449, gnl|mm7|chr4 (108238603-108238164) | |
| 1123-1449, gnl|Mm7|chr4 (108238261-108238559) | |
| 1123-1449, gnl|monDom2|scaffold_70 (1621890-1621462) | |
| 1123-1449, gnl|oryCun1|scaffold_142785 (3874-4383) | |
| 1123-1449, gnl|panTro1|chr1 (50411898-50412417) | |
| 1123-1449, gnl|rheMac2|chr1 (54858593-54859098) | |
| 1123-1449, gnl|rn3|chr5 (130172899-130172479) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| elu (0.770713) | |
| pla (0.401016) | |
| nlu (0.383362) | |
| cly (0.361925) | |
| cbl (0.344392) | |
| pty (0.285429) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| pla (0.401016) | |
| nlu (0.383362) | |
| cly (0.361925) | |
| cbl (0.344392) | |
| pty (0.285429) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cty (0.10408) | |
| jej (0.0989218) |