Non-Coding RNA Search

Ss1.1-Utr1-UTR01F070092.5

Sequence:


               
               GTTCCAAGAGGGGGTCCCTCTGCCACACTGCCCAGGCCAGACCCCCGGCTCTCCCGAAGC
CGGTCAGACCTCTTCCTGCCCCCATCACCAGAATCACCCCCTAACTGGGGGGACAGTCTG
ACTCGAGTCAACCCCTTCTCACTCCGGGAAGACCTCAGGGGTGGCAAGATCAAGCTCCTG
GACACACCCAGCAAGCCAGCCGCCCCCCTGCCCCTTGTGCCACCTTCACTGCCCTCCACC
CAGCTGCCCTTGGTGACCACTCCAGAGACCCTGGTCCAGCCTGGGACACCTGCCCGCCGC
TGCCGCTCGCTACCATCATCCCCTGAACTCCCCCGACGAATGGAGACAGCACTGCCAGGT
CCTGGCCCTCCTGCTATGGGCCCCTCGGCTGAAGAGAGAATGGAATGTGAGGGCAGTAGC
CCTGAACCAGAACCCCCAGGACCAGTTCCCCGGCTGCCCCTGGCTGTGGCCACAGACAAC
TTCATCAGCACCTGTTCCTCGGCCTCCCAGCCCTGGCCCCCTAGATCAGGCCCTCCCCTA
AACAACAATCCCCCAGCTGTGGTGGTGAACTCCCCGCAAGGCTGGGCTGGGGAGCCCTGG
AACCGGGCCCAGCATAGCCTGCCCCGGGCAGCAGCCCTGGAGCGGACAGAACCCTCCCCA
CCCCCGGCAGCTCCCCGGGAGTCCGAGGAGGGGCTGCCCTGCCCTGGCTGCTGCCTCGGC
CCCTTCAGCTTTGGCTTCCTGTCCATGTGCCCACGCCCCGCACCAGCTGTTGCCCGCTAC
CGCAACCTGAACTGTGAGGCGGGCAGCCTCCTCTGCCACCGAGGGCACCATGCCAAGCCA
CCCACACCCAGCCTGCAGCTGCCAGGGGCACGCTCTTAGCAGTGGGGCCTGTGGTCTCCA
GCCTCCACCTTTGGCCTTCATGATGCCCTGTGAGGACAGAGCGCACATGCTGGACGGTGC
CAGCCCCAGACGGGCTGGCCAGCTCTTCTCCCTGTGTAGGGGAGCCTCAGCACGGACACA
AGGAACAGAACATTTCCTTTCCAACCCCTGGGCTTGCTCTCCCGTGGGGGTCACTGAACC
AGACAAAGCATTGCTGACACATGAGACTAACACGTGCAAATTATTTAAAAATATTTCAAT
AAAACTGCCTGGCTGGCTCCGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCAAGAGGGGGTCCCTCTGCCACACTGCCCAGGCCAGACCCCCGGCTCTCCCGAAGC
CGGTCAGACCTCTTCCTGCCCCCATCACCAGAATCACCCCCTAACTGGGGGGACAGTCTG
ACTCGAGTCAACCCCTTCTCACTCCGGGAAGACCTCAGGGGTGGCAAGATCAAGCTCCTG
GACACACCCAGCAAGCCAGCCGCCCCCCTGCCCCTTGTGCCACCTTCACTGCCCTCCACC
CAGCTGCCCTTGGTGACCACTCCAGAGACCCTGGTCCAGCCTGGGACACCTGCCCGCCGC
TGCCGCTCGCTACCATCATCCCCTGAACTCCCCCGACGAATGGAGACAGCACTGCCAGGT
CCTGGCCCTCCTGCTATGGGCCCCTCGGCTGAAGAGAGAATGGAATGTGAGGGCAGTAGC
CCTGAACCAGAACCCCCAGGACCAGTTCCCCGGCTGCCCCTGGCTGTGGCCACAGACAAC
TTCATCAGCACCTGTTCCTCGGCCTCCCAGCCCTGGCCCCCTAGATCAGGCCCTCCCCTA
AACAACAATCCCCCAGCTGTGGTGGTGAACTCCCCGCAAGGCTGGGCTGGGGAGCCCTGG
AACCGGGCCCAGCATAGCCTGCCCCGGGCAGCAGCCCTGGAGCGGACAGAACCCTCCCCA
CCCCCGGCAGCTCCCCGGGAGTCCGAGGAGGGGCTGCCCTGCCCTGGCTGCTGCCTCGGC
CCCTTCAGCTTTGGCTTCCTGTCCATGTGCCCACGCCCCGCACCAGCTGTTGCCCGCTAC
CGCAACCTGAACTGTGAGGCGGGCAGCCTCCTCTGCCACCGAGGGCACCATGCCAAGCCA
CCCACACCCAGCCTGCAGCTGCCAGGGGCACGCTCTTAGCAGTGGGGCCTGTGGTCTCCA
GCCTCCACCTTTGGCCTTCATGATGCCCTGTGAGGACAGAGCGCACATGCTGGACGGTGC
CAGCCCCAGACGGGCTGGCCAGCTCTTCTCCCTGTGTAGGGGAGCCTCAGCACGGACACA
AGGAACAGAACATTTCCTTTCCAACCCCTGGGCTTGCTCTCCCGTGGGGGTCACTGAACC
AGACAAAGCATTGCTGACACATGAGACTAACACGTGCAAATTATTTAAAAATATTTCAAT
AAAACTGCCTGGCTGGCTCCGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21886782|gb|AAM77907.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21886782|gb|AAM77907.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1035-1164, gnl|bosTau2|chr18 (26025063-26024935)
               

               
               1035-1164, gnl|Hg17|chr9 (35599895-35600022)
               

               
               1035-1164, gnl|Mm7|chr4 (43461465-43461594)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1035-1164, gnl|bosTau2|chr18 (26025063-26024935)
               

               
               1035-1164, gnl|Hg17|chr9 (35599895-35600022)
               

               
               1035-1164, gnl|Mm7|chr4 (43461465-43461594)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               eru (0.120048)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               eru (0.120048)

	1035-1164, gnl\|bosTau2\|chr18 (26025063-26024935)
	1035-1164, gnl\|Hg17\|chr9 (35599895-35600022)
	1035-1164, gnl\|Mm7\|chr4 (43461465-43461594)

	mas (0.210305)
	fcc (0.197785)
	nlu (0.191681)
	fhi (0.169578)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	eru (0.120048)