Non-Coding RNA Search

Ss1.1-Utr1-UTR01F120107.5.5

Sequence:


               
               GCCGGCCAGGGCCCCGCATGCTCCCCCAGAGCTGGCTGTCCGCACCCTCTCCTGTCCGCC
CCTGCGCCCAGCCCGGGCCCGGCCGCCTGCCCGTGGATGAGCCACAGGACTTCCTCCACC
TTCAGAGCGGAGAGAAGCTTCCATTCCTCCTCTTCTTCCTCCTCCTCCTCGTCCTCCTCG
GCCTCCCACACCCTCCCGGCCCAGGACCCACCCATGGAGAAGGCCTTGAGCATGTTTTCC
GAGGATTTTGGCAGCTTCATGCGGCCCCACTCAGAGCCCCTGGCCTTTCCAGCCCGCACC
GGGGGGCCTGGCAACATCAAGACCCTGGGCGATGCCTACGAGTTTGCAGTGGACGTGAGT
GACTTCTCACCTGAAGACATCATTGTCACCACCTCCAACAACCACATTGAGGTGCGAGCT
GAGAAGCTGGCAGCTGACGGCACCGTCATGAACACCTTTGCTCACAAGTGCCAACTGCCA
GAGGATGTGGACCCCACATCGGTGACCTCGGCCCTGCGGGAGGACGGCAGCCTCACCATC
CGGGCCCGGCGCCAACCACACACGGAGCACGTCCAGCAGACCTTCCGGACGGAGATCAAA
ATCTGAGGGCCCTCCCCTCCCCGGCCCTGCCCCCACCGCCCTCTCCTCTCCCCCACTGGG
CTGCTAGAGAGGCTTTCCTGCCCCCCTTGTGACAGCTTCCGGGACATCTCAGCCTGGGTT
CCAGGCCCTGACACCCCCACCCCCGCAGACCCCAGGTGGGTCATTCCCCCCACATGAGGC
CCTCTGCTCCACCTGGGGCAGGCCAGGGACCCTCTTGCCTCACCTGTGGCCTCTGGATTC
CAGATGTGGCCTCTTTCACTTAATCCAGAATAAAGGAATTGGGATGGAGAATGGGAGATG
CCAAAAAAGCCACTTTGGGGACGGGGGCTTGGGATAGGCAGGCTCTCTGGGCATTTAATC
TGCAGGACAGACAGAATCTTTGATCTGTGGAATCTCTGCAGGGCAGGGGCGGGGGGATGA
TGGGGCCTGGGACCCCCTCCTTGGCCAAGGGGATCAGGAGAGGCAGATTCAGTTTTCTTT
CTAAACTGAACTGCCATGGGGACACCAGAAGGAGACAGCAGGATGGTCAGCTCCCCTCAG
CCGCTCTACCAGCCCCGACCCAGCTGCTAGGCTGCCTGCCCACAAGGTGCCCCCTCCAGC
CGGCTGTGCCAGGGCAGGGCCACGTTGTGTCTGTGTATAGATGGGGTTTTTCCAATACAG
CTGGTTCGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGCCAGGGCCCCGCATGCTCCCCCAGAGCTGGCTGTCCGCACCCTCTCCTGTCCGCC
CCTGCGCCCAGCCCGGGCCCGGCCGCCTGCCCGTGGATGAGCCACAGGACTTCCTCCACC
TTCAGAGCGGAGAGAAGCTTCCATTCCTCCTCTTCTTCCTCCTCCTCCTCGTCCTCCTCG
GCCTCCCACACCCTCCCGGCCCAGGACCCACCCATGGAGAAGGCCTTGAGCATGTTTTCC
GAGGATTTTGGCAGCTTCATGCGGCCCCACTCAGAGCCCCTGGCCTTTCCAGCCCGCACC
GGGGGGCCTGGCAACATCAAGACCCTGGGCGATGCCTACGAGTTTGCAGTGGACGTGAGT
GACTTCTCACCTGAAGACATCATTGTCACCACCTCCAACAACCACATTGAGGTGCGAGCT
GAGAAGCTGGCAGCTGACGGCACCGTCATGAACACCTTTGCTCACAAGTGCCAACTGCCA
GAGGATGTGGACCCCACATCGGTGACCTCGGCCCTGCGGGAGGACGGCAGCCTCACCATC
CGGGCCCGGCGCCAACCACACACGGAGCACGTCCAGCAGACCTTCCGGACGGAGATCAAA
ATCTGAGGGCCCTCCCCTCCCCGGCCCTGCCCCCACCGCCCTCTCCTCTCCCCCACTGGG
CTGCTAGAGAGGCTTTCCTGCCCCCCTTGTGACAGCTTCCGGGACATCTCAGCCTGGGTT
CCAGGCCCTGACACCCCCACCCCCGCAGACCCCAGGTGGGTCATTCCCCCCACATGAGGC
CCTCTGCTCCACCTGGGGCAGGCCAGGGACCCTCTTGCCTCACCTGTGGCCTCTGGATTC
CAGATGTGGCCTCTTTCACTTAATCCAGAATAAAGGAATTGGGATGGAGAATGGGAGATG
CCAAAAAAGCCACTTTGGGGACGGGGGCTTGGGATAGGCAGGCTCTCTGGGCATTTAATC
TGCAGGACAGACAGAATCTTTGATCTGTGGAATCTCTGCAGGGCAGGGGCGGGGGGATGA
TGGGGCCTGGGACCCCCTCCTTGGCCAAGGGGATCAGGAGAGGCAGATTCAGTTTTCTTT
CTAAACTGAACTGCCATGGGGACACCAGAAGGAGACAGCAGGATGGTCAGCTCCCCTCAG
CCGCTCTACCAGCCCCGACCCAGCTGCTAGGCTGCCTGCCCACAAGGTGCCCCCTCCAGC
CGGCTGTGCCAGGGCAGGGCCACGTTGTGTCTGTGTATAGATGGGGTTTTTCCAATACAG
CTGGTTCGTGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7529575|emb|CAB86671.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7529575|emb|CAB86671.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               77-308, - strand, RNAz p=0.954612
               

               
               704-859, - strand, RNAz p=0.999213
               

               
               940-1078, + strand, RNAz p=0.999898
               

               
               1156-1272, - strand, RNAz p=0.734227

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-308, - strand, RNAz p=0.954612
               

               
               704-859, - strand, RNAz p=0.999213
               

               
               940-1078, + strand, RNAz p=0.999898
               

               
               1156-1272, - strand, RNAz p=0.734227

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK092275, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK092275, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-308, gnl|bosTau2|chr2 (86240631-86240919)
               

               
               4-308, gnl|Hg17|chr1 (16089858-16089549)
               

               
               4-308, gnl|Mm7|chr4 (140800129-140800437)
               


               
               425-1272, gnl|bosTau2|chr2 (86242674-86243520)
               

               
               425-1272, gnl|Hg17|chr1 (16087562-16086716)
               

               
               425-1272, gnl|Mm7|chr4 (140802318-140803045)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-308, gnl|bosTau2|chr2 (86240631-86240919)
               

               
               4-308, gnl|Hg17|chr1 (16089858-16089549)
               

               
               4-308, gnl|Mm7|chr4 (140800129-140800437)
               


               
               425-1272, gnl|bosTau2|chr2 (86242674-86243520)
               

               
               425-1272, gnl|Hg17|chr1 (16087562-16086716)
               

               
               425-1272, gnl|Mm7|chr4 (140802318-140803045)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mas (1.05152)
               

               
               nms (0.855432)
               

               
               hlv (0.417769)
               

               
               ton (0.351)
               

               
               nep (0.183925)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (1.05152)
               

               
               nms (0.855432)
               

               
               hlv (0.417769)
               

               
               ton (0.351)
               

               
               nep (0.183925)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

	77-308, - strand, RNAz p=0.954612
	704-859, - strand, RNAz p=0.999213
	940-1078, + strand, RNAz p=0.999898
	1156-1272, - strand, RNAz p=0.734227

	4-308, gnl\|bosTau2\|chr2 (86240631-86240919)
	4-308, gnl\|Hg17\|chr1 (16089858-16089549)
	4-308, gnl\|Mm7\|chr4 (140800129-140800437)

	425-1272, gnl\|bosTau2\|chr2 (86242674-86243520)
	425-1272, gnl\|Hg17\|chr1 (16087562-16086716)
	425-1272, gnl\|Mm7\|chr4 (140802318-140803045)

	mas (1.05152)
	nms (0.855432)
	hlv (0.417769)
	ton (0.351)
	nep (0.183925)
	ssp (0.13552)
	pla (0.133672)