Ss1.1-Utr1-UTR01G010103.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTAAGCACCTCCCGGCACCGCCCCCGCCGCCCCGCCCCCGGCACGGCCTGGGTCTGTT TGGCCGTGGGGTCGGGTCCGCGCGGACCGCGATGGAGCTGCACATCCTAGAGCACCGGGT GCGGGTGCTGAGCCTCGCCCGGCCCGGTCTCTGGCTCTACACTCACCCACTCATCAAGCT GCTCTTCCTGCCCCGCCGAAGCCGGTGCAAATTCTTCAGCCTGACGGAGACCCCTGAGGA TTACACGCTCATGGTGGACGAGGAGGGCTTCAAAGAGCTGCCCACGTCTGAGTTCCTACA AGTGGCCGAGGCCACGTGGCTAGTGCTGAATGTGTCATCCCACAGCGGCACAGCAGTGCA GGCTGCTGGGGTCACCAAGATTGCCCGCTCAGTAATTGCACCGCTGGCTGAGCACCACGT GTCCGTGCTGATGCTGTCCACCTACCAGACAGACTTCATCCTGGTGCGGGAGCAGGACCT ATCCGTGGTGATCCACACACTGGCCCAGGAATTTGATATCTACCGAGAGGTGGGCGGGGA GCCTGTTCCTGTTGCCAGGGATGATTCCAGCAACGGCTTTCCCCGTGCCCAGCATGGGCC CAGCCCCACAGTGCATCCCATCCAGAGCCCACAGAACCGCTTCTGTGTCCTCACGCTGGA CCCTGAGACACTGCCAGCCATCGCCACCACCCTCATCGATGTCCTCTTCTACTCGCACAG TGGCCCTAAGGAGGCAGCCTCTGGCAGTCCTGGATCCAGCTCCATCACCTTCTTTGCTTT CTCCCTCATCGAGGGCTACATCTCCATTGTCATGGATGCTGAGACACAGAAAAAGTTCCC CAGTGACCTGCTGCTGACCAGCTCCTCGGGGGAGCTGTGGAGGATGGTGCGCATCGGCGG ACAGCCCCTGGGCTTTGATGAGTGTGGGATCGTGGCCCAGATTGCAGGTCCCCTGGCTGC GGCTGACATCTCTGCCTACTACATCAGTACCTTCAACTTCGACCATGCCTTGGTGCCCGA GGACGGCATCAGCAGTGCTATCGAGGTCCTCCAGCGCCGGCAGGAGGGCCTGGGCTCCTG AGCAGCAGCCTCCGGCCTCTCCCCTTGCCCTCAGGCTTCCAGAGATTTTTCGAATATTTC CTCAAGCTCTGGGACATTCCTGCTGGGGGATCCCTCCTTCTGCTCTGTGTATATAAGCTG TGGGCAGAGCACCGGCTCTCACGTGGACACACGTGTCTGCCCCCCACAGGGGAATACGGT GCTCAGGGCTTCCTCCAGGAAGCCCTCAACCCATCACTCCCTGCTGGGCCTCGGCGTTTG CACATTCCCTGCCTGAGGCCCAAGCCTTCCCCCTTTCGGTAGCCCCGTCTGGCTGGCTGC TCCTGGACAGGGCCCTGATCTCCGTTCTGCCTCGGGCTGGGGGTTGCCTTCCCTGGCCAG GTGAGTTCTGACAAGTGCCTCCCCTTCCTGGGACCACCAGAAGTATTTTTACATCTCTCT CTCTCTTCCTTTTTTTATCAACTTGTTAATAAAGAGCTTGTAGTGAGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTAAGCACCTCCCGGCACCGCCCCCGCCGCCCCGCCCCCGGCACGGCCTGGGTCTGTT TGGCCGTGGGGTCGGGTCCGCGCGGACCGCGATGGAGCTGCACATCCTAGAGCACCGGGT GCGGGTGCTGAGCCTCGCCCGGCCCGGTCTCTGGCTCTACACTCACCCACTCATCAAGCT GCTCTTCCTGCCCCGCCGAAGCCGGTGCAAATTCTTCAGCCTGACGGAGACCCCTGAGGA TTACACGCTCATGGTGGACGAGGAGGGCTTCAAAGAGCTGCCCACGTCTGAGTTCCTACA AGTGGCCGAGGCCACGTGGCTAGTGCTGAATGTGTCATCCCACAGCGGCACAGCAGTGCA GGCTGCTGGGGTCACCAAGATTGCCCGCTCAGTAATTGCACCGCTGGCTGAGCACCACGT GTCCGTGCTGATGCTGTCCACCTACCAGACAGACTTCATCCTGGTGCGGGAGCAGGACCT ATCCGTGGTGATCCACACACTGGCCCAGGAATTTGATATCTACCGAGAGGTGGGCGGGGA GCCTGTTCCTGTTGCCAGGGATGATTCCAGCAACGGCTTTCCCCGTGCCCAGCATGGGCC CAGCCCCACAGTGCATCCCATCCAGAGCCCACAGAACCGCTTCTGTGTCCTCACGCTGGA CCCTGAGACACTGCCAGCCATCGCCACCACCCTCATCGATGTCCTCTTCTACTCGCACAG TGGCCCTAAGGAGGCAGCCTCTGGCAGTCCTGGATCCAGCTCCATCACCTTCTTTGCTTT CTCCCTCATCGAGGGCTACATCTCCATTGTCATGGATGCTGAGACACAGAAAAAGTTCCC CAGTGACCTGCTGCTGACCAGCTCCTCGGGGGAGCTGTGGAGGATGGTGCGCATCGGCGG ACAGCCCCTGGGCTTTGATGAGTGTGGGATCGTGGCCCAGATTGCAGGTCCCCTGGCTGC GGCTGACATCTCTGCCTACTACATCAGTACCTTCAACTTCGACCATGCCTTGGTGCCCGA GGACGGCATCAGCAGTGCTATCGAGGTCCTCCAGCGCCGGCAGGAGGGCCTGGGCTCCTG AGCAGCAGCCTCCGGCCTCTCCCCTTGCCCTCAGGCTTCCAGAGATTTTTCGAATATTTC CTCAAGCTCTGGGACATTCCTGCTGGGGGATCCCTCCTTCTGCTCTGTGTATATAAGCTG TGGGCAGAGCACCGGCTCTCACGTGGACACACGTGTCTGCCCCCCACAGGGGAATACGGT GCTCAGGGCTTCCTCCAGGAAGCCCTCAACCCATCACTCCCTGCTGGGCCTCGGCGTTTG CACATTCCCTGCCTGAGGCCCAAGCCTTCCCCCTTTCGGTAGCCCCGTCTGGCTGGCTGC TCCTGGACAGGGCCCTGATCTCCGTTCTGCCTCGGGCTGGGGGTTGCCTTCCCTGGCCAG GTGAGTTCTGACAAGTGCCTCCCCTTCCTGGGACCACCAGAAGTATTTTTACATCTCTCT CTCTCTTCCTTTTTTTATCAACTTGTTAATAAAGAGCTTGTAGTGAGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 566-1353, - strand, RNAz p=0.999997 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 566-1353, - strand, RNAz p=0.999997 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-208, gnl|bosTau2|chr17 (42503204-42502999) | |
| 1-208, gnl|Hg17|chr22 (29010128-29009924) | |
| 1-208, gnl|Mm7|chr11 (4170242-4170433) | |
| 271-466, gnl|bosTau2|chr17 (42501155-42500960) | |
| 271-466, gnl|canFam2|chr26 (26471633-26471841) | |
| 271-466, gnl|danRer3|chrUn (22759241-22759029) | |
| 271-466, gnl|dasNov1|scaffold_5013 (3529-3743) | |
| 271-466, gnl|echTel1|scaffold_165763 (5306-5092) | |
| 271-466, gnl|fr1|chrUn (32189400-32189619) | |
| 271-466, gnl|galGal2|chr15 (10730780-10730564) | |
| 271-466, gnl|hg17|chr22 (29007912-29008120) | |
| 271-466, gnl|Hg17|chr22 (29008108-29007913) | |
| 271-466, gnl|loxAfr1|scaffold_10283 (14754-14967) | |
| 271-466, gnl|mm7|chr11 (4172301-4172096) | |
| 271-466, gnl|Mm7|chr11 (4172106-4172298) | |
| 271-466, gnl|monDom2|scaffold_89 (4580200-4580414) | |
| 271-466, gnl|oryCun1|scaffold_142565 (971-1186) | |
| 271-466, gnl|panTro1|chr23 (29102597-29102805) | |
| 271-466, gnl|rheMac2|chr10 (74139054-74139262) | |
| 271-466, gnl|rn3|chr14 (84862067-84861862) | |
| 271-466, gnl|tetNig1|chr12 (4546649-4546430) | |
| 271-466, gnl|xenTro1|scaffold_207 (863739-863947) | |
| 566-726, gnl|bosTau2|chr17 (42500474-42500315) | |
| 566-726, gnl|Hg17|chr22 (29007510-29007361) | |
| 566-726, gnl|Mm7|chr11 (4172669-4172816) | |
| 1012-1417, gnl|bosTau2|chr17 (42499230-42498802) | |
| 1012-1417, gnl|Hg17|chr22 (29006232-29005734) | |
| 1012-1417, gnl|Mm7|chr11 (4173845-4174333) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-208, gnl|bosTau2|chr17 (42503204-42502999) | |
| 1-208, gnl|Hg17|chr22 (29010128-29009924) | |
| 1-208, gnl|Mm7|chr11 (4170242-4170433) | |
| 271-466, gnl|bosTau2|chr17 (42501155-42500960) | |
| 271-466, gnl|canFam2|chr26 (26471633-26471841) | |
| 271-466, gnl|danRer3|chrUn (22759241-22759029) | |
| 271-466, gnl|dasNov1|scaffold_5013 (3529-3743) | |
| 271-466, gnl|echTel1|scaffold_165763 (5306-5092) | |
| 271-466, gnl|fr1|chrUn (32189400-32189619) | |
| 271-466, gnl|galGal2|chr15 (10730780-10730564) | |
| 271-466, gnl|hg17|chr22 (29007912-29008120) | |
| 271-466, gnl|Hg17|chr22 (29008108-29007913) | |
| 271-466, gnl|loxAfr1|scaffold_10283 (14754-14967) | |
| 271-466, gnl|mm7|chr11 (4172301-4172096) | |
| 271-466, gnl|Mm7|chr11 (4172106-4172298) | |
| 271-466, gnl|monDom2|scaffold_89 (4580200-4580414) | |
| 271-466, gnl|oryCun1|scaffold_142565 (971-1186) | |
| 271-466, gnl|panTro1|chr23 (29102597-29102805) | |
| 271-466, gnl|rheMac2|chr10 (74139054-74139262) | |
| 271-466, gnl|rn3|chr14 (84862067-84861862) | |
| 271-466, gnl|tetNig1|chr12 (4546649-4546430) | |
| 271-466, gnl|xenTro1|scaffold_207 (863739-863947) | |
| 566-726, gnl|bosTau2|chr17 (42500474-42500315) | |
| 566-726, gnl|Hg17|chr22 (29007510-29007361) | |
| 566-726, gnl|Mm7|chr11 (4172669-4172816) | |
| 1012-1417, gnl|bosTau2|chr17 (42499230-42498802) | |
| 1012-1417, gnl|Hg17|chr22 (29006232-29005734) | |
| 1012-1417, gnl|Mm7|chr11 (4173845-4174333) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| pty (0.285429) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |