Ss1.1-Utr1-UTR01G020088.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCAGCCCAGCGCGCCCGGAAGCCAACAGCTGCTCCCGGACTCTGCGAGGGAAGTGCAG CCGACCTGCGCCCGCCCAGACCCGGGAGCGCACCTCCCTCCGGCAGGGGAGTGCGCTGGC GCAGACATTTACCTGTTTCATCTTCCCATGGCTCGGGGCGGGCAGGCTGGGACAGCGCTC TGCGCCTGCCACCCTCCTTCTTCCCCAGCCGGGCTCAAGGCAGCCGCCGACAGCAGCTTC CCCGGTTACTACAACAACCAACCAGCAACCGCCCGCTCGGAGCCACTGCGCAGGCGCCCG CTACCCGGCGCGGACAGCCCTCGGCTTCGGGCGCGGGCAATTGTCGTCACTACTGTACAG CGCAAGCGCAGAGCCTTGATCGCCGCAGAGGACTTCTTTTTTCCGCTCTTTTTCCCTCCG CCCCTAAAGGATTGACTCAGAACCCGGGGCTCTTTCGCCACGCTCAATAGGATGGTTCAC TGCTTCAGCAGCATAACCGGGGGTGAGGCTTGGGCAGCGACAACCGCTGATTGGCAGTAA AGAGGATCACGCCCCATCTCCTGCTGGAGCAGAACCAGAACAGCCAATCAGAGCAAGTAC TGATGGAAACGACCCAATCCTGGAGCCGGGCTGAAGGTGGGGGCGGGGACAAGTGGCTCC GGTGGAATCGGTGTTGGAGCTGCCCTGGGGAATATCCTTTGCTGCTGCTGCTGCTGCTGC TGCAGCTGCAGTACTAGGGCCACATTTCTCCAGGCACAAAGCCCTCTAGGGTTGAAGAGA GCCATGAGCCGGTTCCTGAACGTGTTACGAAGCTGGCTGGTCATGGTATCCATCATAGCC ATGGGGAACACGCTGCAGAGCTTCCGAGACCACACCTTTCTCTATGAAAAGCTCTACACC GGCAAGCCAGACCTCGTGAATGGCCTCCAAGCTCGAACCTTTGGGATCTGGACACTACTC TCATCAATGATCCGCTGCCTCTGCGCCATCGACATCCACAACAAAACGCTTTACCTCATC ACGCTCTGCACCTTCTTCCTCGCCCTGGGACACTTCCTCACCGAGCTGTTTGTATTCGGG ACTGCGGCACCCACAATCAGCGTCCTGGCACCCCTGGTGGTGGCAAGTTCTTCCATCCTG GGTATGCTAGTGGGGCTGCAGTACCTAGAAGCAGAACCAGGCTCCAGACAGAAGAAGAGA AACTGAGGCCAACATCACCACGTCAGAGACTTCAACTTCCACCTCCACTCTTAAAATTTC TTCTTTTCTGCTCCATCATCCACTTCTAGCCTTTTACATTTTGGTTTTTTCTTTAATTTA AAAAATTTTAAGATCTGCACACACAAGTAGGTACCATTTAAAATATGTACCATTTAAAGA GTCATTTTAAAATGAATACTCTGGAGGGAGTTCCTGTTGTGGCTTAGTGGTAATGAACCC AACTAGTATCCAGGAGGATGTGGGTTCGATCCTTGGCCCCACTCGGTGGGTTAAGGATCT GGCATTACCGTGAGCTGTGGTGTAGGCCGCAGATGCAGCTTGCATCTGGCATTGCTGTGA CTGTGCTGTAGGCCTGCAGCTGCAGTTCTGATTCGACCTCTAGCCTGGGAACTTCCATAT GCCTCTGGTACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCAGCCCAGCGCGCCCGGAAGCCAACAGCTGCTCCCGGACTCTGCGAGGGAAGTGCAG CCGACCTGCGCCCGCCCAGACCCGGGAGCGCACCTCCCTCCGGCAGGGGAGTGCGCTGGC GCAGACATTTACCTGTTTCATCTTCCCATGGCTCGGGGCGGGCAGGCTGGGACAGCGCTC TGCGCCTGCCACCCTCCTTCTTCCCCAGCCGGGCTCAAGGCAGCCGCCGACAGCAGCTTC CCCGGTTACTACAACAACCAACCAGCAACCGCCCGCTCGGAGCCACTGCGCAGGCGCCCG CTACCCGGCGCGGACAGCCCTCGGCTTCGGGCGCGGGCAATTGTCGTCACTACTGTACAG CGCAAGCGCAGAGCCTTGATCGCCGCAGAGGACTTCTTTTTTCCGCTCTTTTTCCCTCCG CCCCTAAAGGATTGACTCAGAACCCGGGGCTCTTTCGCCACGCTCAATAGGATGGTTCAC TGCTTCAGCAGCATAACCGGGGGTGAGGCTTGGGCAGCGACAACCGCTGATTGGCAGTAA AGAGGATCACGCCCCATCTCCTGCTGGAGCAGAACCAGAACAGCCAATCAGAGCAAGTAC TGATGGAAACGACCCAATCCTGGAGCCGGGCTGAAGGTGGGGGCGGGGACAAGTGGCTCC GGTGGAATCGGTGTTGGAGCTGCCCTGGGGAATATCCTTTGCTGCTGCTGCTGCTGCTGC TGCAGCTGCAGTACTAGGGCCACATTTCTCCAGGCACAAAGCCCTCTAGGGTTGAAGAGA GCCATGAGCCGGTTCCTGAACGTGTTACGAAGCTGGCTGGTCATGGTATCCATCATAGCC ATGGGGAACACGCTGCAGAGCTTCCGAGACCACACCTTTCTCTATGAAAAGCTCTACACC GGCAAGCCAGACCTCGTGAATGGCCTCCAAGCTCGAACCTTTGGGATCTGGACACTACTC TCATCAATGATCCGCTGCCTCTGCGCCATCGACATCCACAACAAAACGCTTTACCTCATC ACGCTCTGCACCTTCTTCCTCGCCCTGGGACACTTCCTCACCGAGCTGTTTGTATTCGGG ACTGCGGCACCCACAATCAGCGTCCTGGCACCCCTGGTGGTGGCAAGTTCTTCCATCCTG GGTATGCTAGTGGGGCTGCAGTACCTAGAAGCAGAACCAGGCTCCAGACAGAAGAAGAGA AACTGAGGCCAACATCACCACGTCAGAGACTTCAACTTCCACCTCCACTCTTAAAATTTC TTCTTTTCTGCTCCATCATCCACTTCTAGCCTTTTACATTTTGGTTTTTTCTTTAATTTA AAAAATTTTAAGATCTGCACACACAAGTAGGTACCATTTAAAATATGTACCATTTAAAGA GTCATTTTAAAATGAATACTCTGGAGGGAGTTCCTGTTGTGGCTTAGTGGTAATGAACCC AACTAGTATCCAGGAGGATGTGGGTTCGATCCTTGGCCCCACTCGGTGGGTTAAGGATCT GGCATTACCGTGAGCTGTGGTGTAGGCCGCAGATGCAGCTTGCATCTGGCATTGCTGTGA CTGTGCTGTAGGCCTGCAGCTGCAGTTCTGATTCGACCTCTAGCCTGGGAACTTCCATAT GCCTCTGGTACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 462-581, + strand, RNAz p=0.720118 | |
| 784-903, - strand, RNAz p=0.761951 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 462-581, + strand, RNAz p=0.720118 | |
| 784-903, - strand, RNAz p=0.761951 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-742, gnl|bosTau2|chr10 (57287089-57286349) | |
| 1-742, gnl|Hg17|chr14 (75197614-75196872) | |
| 1-742, gnl|Mm7|chr12 (83826682-83825952) | |
| 745-914, gnl|bosTau2|chr10 (57284028-57283859) | |
| 745-914, gnl|canFam2|chr8 (51686145-51686307) | |
| 745-914, gnl|danRer3|chrNA (202894382-202894535) | |
| 745-914, gnl|fr1|chrUn (34810718-34810578) | |
| 745-914, gnl|galGal2|chr5 (35177879-35178011) | |
| 745-914, gnl|hg17|chr14 (75193453-75193615) | |
| 745-914, gnl|Hg17|chr14 (75193637-75193468) | |
| 745-914, gnl|loxAfr1|scaffold_82560 (790-952) | |
| 745-914, gnl|mm7|chr12 (83823555-83823714) | |
| 745-914, gnl|Mm7|chr12 (83823736-83823570) | |
| 745-914, gnl|monDom2|scaffold_8 (58422412-58422250) | |
| 745-914, gnl|oryCun1|scaffold_101431 (4456-4616) | |
| 745-914, gnl|panTro1|chr15 (75237382-75237544) | |
| 745-914, gnl|rheMac2|chr7 (138785231-138785393) | |
| 745-914, gnl|rn3|chr6 (109946514-109946673) | |
| 745-914, gnl|tetNig1|chr10 (4780791-4780654) | |
| 745-914, gnl|xenTro1|scaffold_423 (120277-120118) | |
| 1008-1128, gnl|bosTau2|chr10 (57278282-57278162) | |
| 1008-1128, gnl|Hg17|chr14 (75187985-75187865) | |
| 1008-1128, gnl|Mm7|chr12 (83817914-83817794) | |
| 1132-1403, gnl|bosTau2|chr10 (57275948-57275653) | |
| 1132-1403, gnl|Hg17|chr14 (75187725-75187435) | |
| 1132-1403, gnl|Mm7|chr12 (83817668-83817325) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-742, gnl|bosTau2|chr10 (57287089-57286349) | |
| 1-742, gnl|Hg17|chr14 (75197614-75196872) | |
| 1-742, gnl|Mm7|chr12 (83826682-83825952) | |
| 745-914, gnl|bosTau2|chr10 (57284028-57283859) | |
| 745-914, gnl|canFam2|chr8 (51686145-51686307) | |
| 745-914, gnl|danRer3|chrNA (202894382-202894535) | |
| 745-914, gnl|fr1|chrUn (34810718-34810578) | |
| 745-914, gnl|galGal2|chr5 (35177879-35178011) | |
| 745-914, gnl|hg17|chr14 (75193453-75193615) | |
| 745-914, gnl|Hg17|chr14 (75193637-75193468) | |
| 745-914, gnl|loxAfr1|scaffold_82560 (790-952) | |
| 745-914, gnl|mm7|chr12 (83823555-83823714) | |
| 745-914, gnl|Mm7|chr12 (83823736-83823570) | |
| 745-914, gnl|monDom2|scaffold_8 (58422412-58422250) | |
| 745-914, gnl|oryCun1|scaffold_101431 (4456-4616) | |
| 745-914, gnl|panTro1|chr15 (75237382-75237544) | |
| 745-914, gnl|rheMac2|chr7 (138785231-138785393) | |
| 745-914, gnl|rn3|chr6 (109946514-109946673) | |
| 745-914, gnl|tetNig1|chr10 (4780791-4780654) | |
| 745-914, gnl|xenTro1|scaffold_423 (120277-120118) | |
| 1008-1128, gnl|bosTau2|chr10 (57278282-57278162) | |
| 1008-1128, gnl|Hg17|chr14 (75187985-75187865) | |
| 1008-1128, gnl|Mm7|chr12 (83817914-83817794) | |
| 1132-1403, gnl|bosTau2|chr10 (57275948-57275653) | |
| 1132-1403, gnl|Hg17|chr14 (75187725-75187435) | |
| 1132-1403, gnl|Mm7|chr12 (83817668-83817325) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cli (0.305623) | |
| ece (0.229305) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.305623) | |
| ece (0.229305) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |