Ss1.1-Utr1-UTR01G020106.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGGCTCGAGCCCGCCCATTCCGGCCCATTTCCACCCCCGGAGCAGGGTTGAATGCCT AGCTATACCCTCAGACACGACCATGGAGAAAGGTGGGAACATACAACTGGAGATACCTGA TTTCAGCAACTCAGTCCTAAGCCATCTAAACCAACTGCGCATGCAGGGACGTCTCTGTGA CATCGTGGTCAATGTGCAAGGACAAGCTTTTAGGGCTCACAAAGTGGTACTGGCAGCCAG CTCCCCCTATTTCCGAGATCACATGTCCTTGAATGAGATGAGTACTGTCTCTATCTCAGT CATCAAGAACCCTACTGTTTTCGAGCAGCTCCTTTCTTTCTGTTACACGGGGCGACTATG CCTGCAACTGGCAGATATCATCAGCTACCTGACAGCTGCCAGTTTTCTGCAAATGCAGCA TATTATAGACAAATGTACACAGATCCTGGAGGGCATTCATTTCAAAATTAATGTGGCTGA GGTTGAAGCTGAATTAAGTCAAACGAGGACAAAGCATCCAGAGGGACCTCCAGAGTCTCA CAGAGTTACACCAAATCTGAACCGCTCTCTTAGCCCCCGACATAATACTCCAAAGGGAAA CCGGCGAGGTCAGGTTAGCACGGTGCTGGATATCAGGGAGCTCAGTCCTCCTGAGGAGTC CACCAGCCCTCAGATAATTGAGCAGAGTTCTGACGTCGAGAGCAGGGAGCCCATCCTGAG GATCAACCGAGCAGGACAGTGGTATGTGGAGACGGGAGTAGCCGACAGAGGGGCCCGGAG TGATGATGAAGTTAGAGTCCTTGGAGCAGTACACATCAAAACTGAAAATCTAGAAGAGTG GCTTGGGCCTGAGAATCAGCCTTCCGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACAGC CATGGTGATTGACACCACAGGCCATGGTTCTGTAGGACAGGAAAACTACAGTTTAGGATC TTCAGGAGCCAAGGTGGCTAGACCAACAAGCAGTGAAATTGACAGGTAAGTTTTGGGTTT TTTTGCCCATCTAATGACTGTTATGCAGACATCGCTAAAGCAGGACCTCTGTGTGATACA AAGAGCGTCTTCCTTATTAGTCAAAATAAGTTGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGGCTCGAGCCCGCCCATTCCGGCCCATTTCCACCCCCGGAGCAGGGTTGAATGCCT AGCTATACCCTCAGACACGACCATGGAGAAAGGTGGGAACATACAACTGGAGATACCTGA TTTCAGCAACTCAGTCCTAAGCCATCTAAACCAACTGCGCATGCAGGGACGTCTCTGTGA CATCGTGGTCAATGTGCAAGGACAAGCTTTTAGGGCTCACAAAGTGGTACTGGCAGCCAG CTCCCCCTATTTCCGAGATCACATGTCCTTGAATGAGATGAGTACTGTCTCTATCTCAGT CATCAAGAACCCTACTGTTTTCGAGCAGCTCCTTTCTTTCTGTTACACGGGGCGACTATG CCTGCAACTGGCAGATATCATCAGCTACCTGACAGCTGCCAGTTTTCTGCAAATGCAGCA TATTATAGACAAATGTACACAGATCCTGGAGGGCATTCATTTCAAAATTAATGTGGCTGA GGTTGAAGCTGAATTAAGTCAAACGAGGACAAAGCATCCAGAGGGACCTCCAGAGTCTCA CAGAGTTACACCAAATCTGAACCGCTCTCTTAGCCCCCGACATAATACTCCAAAGGGAAA CCGGCGAGGTCAGGTTAGCACGGTGCTGGATATCAGGGAGCTCAGTCCTCCTGAGGAGTC CACCAGCCCTCAGATAATTGAGCAGAGTTCTGACGTCGAGAGCAGGGAGCCCATCCTGAG GATCAACCGAGCAGGACAGTGGTATGTGGAGACGGGAGTAGCCGACAGAGGGGCCCGGAG TGATGATGAAGTTAGAGTCCTTGGAGCAGTACACATCAAAACTGAAAATCTAGAAGAGTG GCTTGGGCCTGAGAATCAGCCTTCCGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACAGC CATGGTGATTGACACCACAGGCCATGGTTCTGTAGGACAGGAAAACTACAGTTTAGGATC TTCAGGAGCCAAGGTGGCTAGACCAACAAGCAGTGAAATTGACAGGTAAGTTTTGGGTTT TTTTGCCCATCTAATGACTGTTATGCAGACATCGCTAAAGCAGGACCTCTGTGTGATACA AAGAGCGTCTTCCTTATTAGTCAAAATAAGTTGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 240-459, - strand, RNAz p=0.940391 | |
| 359-478, - strand, RNAz p=0.576529 | |
| 840-999, + strand, RNAz p=0.956192 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 240-459, - strand, RNAz p=0.940391 | |
| 359-478, - strand, RNAz p=0.576529 | |
| 840-999, + strand, RNAz p=0.956192 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 41-1099, gnl|bosTau2|chr21 (47549745-47550801) | |
| 41-1099, gnl|Hg17|chr1 (170570987-170572034) | |
| 41-1099, gnl|Mm7|chr1 (160995139-160994093) | |
| 101-486, gnl|bosTau2|chr11 (75078146-75077761) | |
| 101-486, gnl|canFam2|chr9 (59742872-59742498) | |
| 101-486, gnl|danRer3|chrUn (130209026-130209394) | |
| 101-486, gnl|dasNov1|scaffold_14216 (22149-22523) | |
| 101-486, gnl|echTel1|scaffold_292247 (9954-9580) | |
| 101-486, gnl|fr1|chrUn (47306276-47306650) | |
| 101-486, gnl|galGal2|chr17 (187878-187504) | |
| 101-486, gnl|hg17|chr9 (126721242-126721616) | |
| 101-486, gnl|Hg17|chr9 (126721263-126721648) | |
| 101-486, gnl|loxAfr1|scaffold_3861 (32037-31663) | |
| 101-486, gnl|mm7|chr2 (33419789-33419415) | |
| 101-486, gnl|Mm7|chr2 (33419766-33419381) | |
| 101-486, gnl|monDom2|scaffold_38 (22019938-22020312) | |
| 101-486, gnl|oryCun1|scaffold_88119 (1073-1446) | |
| 101-486, gnl|panTro1|chr11 (111531332-111531706) | |
| 101-486, gnl|rheMac2|chr15 (99709697-99709323) | |
| 101-486, gnl|rn3|chr3 (12315260-12314886) | |
| 101-486, gnl|tetNig1|chrUn_random (33906235-33905861) | |
| 101-486, gnl|xenTro1|scaffold_1095 (17545-17917) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-1099, gnl|bosTau2|chr21 (47549745-47550801) | |
| 41-1099, gnl|Hg17|chr1 (170570987-170572034) | |
| 41-1099, gnl|Mm7|chr1 (160995139-160994093) | |
| 101-486, gnl|bosTau2|chr11 (75078146-75077761) | |
| 101-486, gnl|canFam2|chr9 (59742872-59742498) | |
| 101-486, gnl|danRer3|chrUn (130209026-130209394) | |
| 101-486, gnl|dasNov1|scaffold_14216 (22149-22523) | |
| 101-486, gnl|echTel1|scaffold_292247 (9954-9580) | |
| 101-486, gnl|fr1|chrUn (47306276-47306650) | |
| 101-486, gnl|galGal2|chr17 (187878-187504) | |
| 101-486, gnl|hg17|chr9 (126721242-126721616) | |
| 101-486, gnl|Hg17|chr9 (126721263-126721648) | |
| 101-486, gnl|loxAfr1|scaffold_3861 (32037-31663) | |
| 101-486, gnl|mm7|chr2 (33419789-33419415) | |
| 101-486, gnl|Mm7|chr2 (33419766-33419381) | |
| 101-486, gnl|monDom2|scaffold_38 (22019938-22020312) | |
| 101-486, gnl|oryCun1|scaffold_88119 (1073-1446) | |
| 101-486, gnl|panTro1|chr11 (111531332-111531706) | |
| 101-486, gnl|rheMac2|chr15 (99709697-99709323) | |
| 101-486, gnl|rn3|chr3 (12315260-12314886) | |
| 101-486, gnl|tetNig1|chrUn_random (33906235-33905861) | |
| 101-486, gnl|xenTro1|scaffold_1095 (17545-17917) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) |