Ss1.1-Utr1-UTR01G030105.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATTCTCCTGCCACTGCTGTTACGACATCCTGGTTAACCCCACTACCTTGAACTGTGGG CACAGCTTCTGCGCTAGGTTACCTGCTCTGTGGTGGGCCTCTTCCAAGAAAACAGAATGC CCAGAATGCCGAGACAAATGGGAAGGTTTCCCCAAAGTCAATATTCTCCTCAGGGATGCC ATTGAAAAGTTATTTCCCGACGCCATTAGAATGCGAGTCGAAGACATTCAGCAGAATAAT GACATCATCCAGAGTCTTGCAGCCTTTCAGAAGTACGGGAGCGATCAGATTCCTTTCGCT CCCCACACAGGCCGAGCGCCTCAGCAGAGAGGCGGGGGATTCTTTTCGGGTGTGCTCACG GCTCTAACTGGCGTGGCAGTGGTCCTGCTGGTGTATCACTGGAGCAGCAAGGAATCCGAG CACGACCTCCTGGTCCACAAGGCAGTGGCCAGGTGGACAGCGGAAGAAGTTGTCCTCTGG CTGGAGCAGCTGGGCCCCTGGGCCTCTCTCTACAGAGACAGGTTTTTATCTGAAAGAGTA AATGGCAGGTTGCTCTTAACTTTGACAGAGGAAGACTTTTCCAGGGCGCCATACAGCATA GAAAATAGCATCCACCGAAGAGCCATCCTCATGGAACTGGAGCAAGTCAAAGCACTCGGC GTGAAGCCACCCCAGAACCTCTGGGAATATAAGGCCGTGAACCCCGGCAGGTCTCTGTTC CTGCTCTACGCCCTCAAGAGCTCCCCCAGGCTCGGCCTGCTGTACCTCTACCTGTTCGAC TACACGGACACCTTCCTGCCCTTCATCCACACCATCTGCCCTCTGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATTCTCCTGCCACTGCTGTTACGACATCCTGGTTAACCCCACTACCTTGAACTGTGGG CACAGCTTCTGCGCTAGGTTACCTGCTCTGTGGTGGGCCTCTTCCAAGAAAACAGAATGC CCAGAATGCCGAGACAAATGGGAAGGTTTCCCCAAAGTCAATATTCTCCTCAGGGATGCC ATTGAAAAGTTATTTCCCGACGCCATTAGAATGCGAGTCGAAGACATTCAGCAGAATAAT GACATCATCCAGAGTCTTGCAGCCTTTCAGAAGTACGGGAGCGATCAGATTCCTTTCGCT CCCCACACAGGCCGAGCGCCTCAGCAGAGAGGCGGGGGATTCTTTTCGGGTGTGCTCACG GCTCTAACTGGCGTGGCAGTGGTCCTGCTGGTGTATCACTGGAGCAGCAAGGAATCCGAG CACGACCTCCTGGTCCACAAGGCAGTGGCCAGGTGGACAGCGGAAGAAGTTGTCCTCTGG CTGGAGCAGCTGGGCCCCTGGGCCTCTCTCTACAGAGACAGGTTTTTATCTGAAAGAGTA AATGGCAGGTTGCTCTTAACTTTGACAGAGGAAGACTTTTCCAGGGCGCCATACAGCATA GAAAATAGCATCCACCGAAGAGCCATCCTCATGGAACTGGAGCAAGTCAAAGCACTCGGC GTGAAGCCACCCCAGAACCTCTGGGAATATAAGGCCGTGAACCCCGGCAGGTCTCTGTTC CTGCTCTACGCCCTCAAGAGCTCCCCCAGGCTCGGCCTGCTGTACCTCTACCTGTTCGAC TACACGGACACCTTCCTGCCCTTCATCCACACCATCTGCCCTCTGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 379-550, + strand, RNAz p=0.800796 | |
| 461-550, - strand, RNAz p=0.696862 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 379-550, + strand, RNAz p=0.800796 | |
| 461-550, - strand, RNAz p=0.696862 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-174, gnl|bosTau2|chr25 (14578553-14578380) | |
| 1-174, gnl|canFam2|chr6 (31641722-31641523) | |
| 1-174, gnl|dasNov1|scaffold_2799 (47208-47009) | |
| 1-174, gnl|echTel1|scaffold_300510 (5876-5677) | |
| 1-174, gnl|fr1|chrUn (137488414-137488218) | |
| 1-174, gnl|galGal2|chr14 (3038409-3038620) | |
| 1-174, gnl|hg17|chr16 (14645771-14645970) | |
| 1-174, gnl|Hg17|chr16 (14645795-14645968) | |
| 1-174, gnl|loxAfr1|scaffold_13419 (47055-46856) | |
| 1-174, gnl|mm7|chr16 (13232094-13232293) | |
| 1-174, gnl|Mm7|chr16 (13232118-13232291) | |
| 1-174, gnl|monDom2|scaffold_17 (32314211-32314410) | |
| 1-174, gnl|oryCun1|scaffold_159480 (6002-5803) | |
| 1-174, gnl|panTro1|chr18 (15052898-15053097) | |
| 1-174, gnl|rheMac2|chr20 (14773484-14773683) | |
| 1-174, gnl|tetNig1|chr18 (9034438-9034239) | |
| 1-174, gnl|xenTro1|scaffold_859 (21656-21451) | |
| 379-550, gnl|bosTau2|chr25 (14576001-14575830) | |
| 379-550, gnl|canFam2|chr6 (31638592-31638370) | |
| 379-550, gnl|dasNov1|scaffold_2799 (43718-43484) | |
| 379-550, gnl|echTel1|scaffold_300510 (250-14) | |
| 379-550, gnl|fr1|chrUn (137487415-137487185) | |
| 379-550, gnl|galGal2|chr14 (3039923-3040137) | |
| 379-550, gnl|hg17|chr16 (14651138-14651373) | |
| 379-550, gnl|Hg17|chr16 (14651162-14651333) | |
| 379-550, gnl|loxAfr1|scaffold_13419 (43836-43607) | |
| 379-550, gnl|mm7|chr16 (13235627-13235843) | |
| 379-550, gnl|Mm7|chr16 (13235648-13235819) | |
| 379-550, gnl|monDom2|scaffold_17 (32317879-32318102) | |
| 379-550, gnl|oryCun1|scaffold_50877 (620-387) | |
| 379-550, gnl|panTro1|chr18 (15058287-15058522) | |
| 379-550, gnl|rheMac2|chr20 (14778353-14778588) | |
| 379-550, gnl|rn3|chr10 (26-242) | |
| 379-550, gnl|tetNig1|chr18 (9033484-9033290) | |
| 379-550, gnl|xenTro1|scaffold_859 (18145-17944) | |
| 692-827, gnl|bosTau2|chr25 (14567068-14566933) | |
| 692-827, gnl|canFam2|chr6 (31628184-31628011) | |
| 692-827, gnl|dasNov1|scaffold_27909 (5131-4959) | |
| 692-827, gnl|echTel1|scaffold_54779 (3749-3575) | |
| 692-827, gnl|fr1|chrUn (137486931-137486789) | |
| 692-827, gnl|galGal2|chr14 (3041111-3041258) | |
| 692-827, gnl|hg17|chr16 (14663208-14663378) | |
| 692-827, gnl|Hg17|chr16 (14663248-14663383) | |
| 692-827, gnl|loxAfr1|scaffold_13419 (38371-38198) | |
| 692-827, gnl|mm7|chr16 (13243880-13244053) | |
| 692-827, gnl|Mm7|chr16 (13243923-13244058) | |
| 692-827, gnl|monDom2|scaffold_17 (32321670-32321812) | |
| 692-827, gnl|oryCun1|scaffold_158075 (8785-8624) | |
| 692-827, gnl|panTro1|chr18 (15070928-15071098) | |
| 692-827, gnl|rheMac2|chr20 (14792361-14792531) | |
| 692-827, gnl|rn3|chr10 (7508-7681) | |
| 692-827, gnl|tetNig1|chr18 (9033050-9032883) | |
| 692-827, gnl|xenTro1|scaffold_859 (13719-13572) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-174, gnl|bosTau2|chr25 (14578553-14578380) | |
| 1-174, gnl|canFam2|chr6 (31641722-31641523) | |
| 1-174, gnl|dasNov1|scaffold_2799 (47208-47009) | |
| 1-174, gnl|echTel1|scaffold_300510 (5876-5677) | |
| 1-174, gnl|fr1|chrUn (137488414-137488218) | |
| 1-174, gnl|galGal2|chr14 (3038409-3038620) | |
| 1-174, gnl|hg17|chr16 (14645771-14645970) | |
| 1-174, gnl|Hg17|chr16 (14645795-14645968) | |
| 1-174, gnl|loxAfr1|scaffold_13419 (47055-46856) | |
| 1-174, gnl|mm7|chr16 (13232094-13232293) | |
| 1-174, gnl|Mm7|chr16 (13232118-13232291) | |
| 1-174, gnl|monDom2|scaffold_17 (32314211-32314410) | |
| 1-174, gnl|oryCun1|scaffold_159480 (6002-5803) | |
| 1-174, gnl|panTro1|chr18 (15052898-15053097) | |
| 1-174, gnl|rheMac2|chr20 (14773484-14773683) | |
| 1-174, gnl|tetNig1|chr18 (9034438-9034239) | |
| 1-174, gnl|xenTro1|scaffold_859 (21656-21451) | |
| 379-550, gnl|bosTau2|chr25 (14576001-14575830) | |
| 379-550, gnl|canFam2|chr6 (31638592-31638370) | |
| 379-550, gnl|dasNov1|scaffold_2799 (43718-43484) | |
| 379-550, gnl|echTel1|scaffold_300510 (250-14) | |
| 379-550, gnl|fr1|chrUn (137487415-137487185) | |
| 379-550, gnl|galGal2|chr14 (3039923-3040137) | |
| 379-550, gnl|hg17|chr16 (14651138-14651373) | |
| 379-550, gnl|Hg17|chr16 (14651162-14651333) | |
| 379-550, gnl|loxAfr1|scaffold_13419 (43836-43607) | |
| 379-550, gnl|mm7|chr16 (13235627-13235843) | |
| 379-550, gnl|Mm7|chr16 (13235648-13235819) | |
| 379-550, gnl|monDom2|scaffold_17 (32317879-32318102) | |
| 379-550, gnl|oryCun1|scaffold_50877 (620-387) | |
| 379-550, gnl|panTro1|chr18 (15058287-15058522) | |
| 379-550, gnl|rheMac2|chr20 (14778353-14778588) | |
| 379-550, gnl|rn3|chr10 (26-242) | |
| 379-550, gnl|tetNig1|chr18 (9033484-9033290) | |
| 379-550, gnl|xenTro1|scaffold_859 (18145-17944) | |
| 692-827, gnl|bosTau2|chr25 (14567068-14566933) | |
| 692-827, gnl|canFam2|chr6 (31628184-31628011) | |
| 692-827, gnl|dasNov1|scaffold_27909 (5131-4959) | |
| 692-827, gnl|echTel1|scaffold_54779 (3749-3575) | |
| 692-827, gnl|fr1|chrUn (137486931-137486789) | |
| 692-827, gnl|galGal2|chr14 (3041111-3041258) | |
| 692-827, gnl|hg17|chr16 (14663208-14663378) | |
| 692-827, gnl|Hg17|chr16 (14663248-14663383) | |
| 692-827, gnl|loxAfr1|scaffold_13419 (38371-38198) | |
| 692-827, gnl|mm7|chr16 (13243880-13244053) | |
| 692-827, gnl|Mm7|chr16 (13243923-13244058) | |
| 692-827, gnl|monDom2|scaffold_17 (32321670-32321812) | |
| 692-827, gnl|oryCun1|scaffold_158075 (8785-8624) | |
| 692-827, gnl|panTro1|chr18 (15070928-15071098) | |
| 692-827, gnl|rheMac2|chr20 (14792361-14792531) | |
| 692-827, gnl|rn3|chr10 (7508-7681) | |
| 692-827, gnl|tetNig1|chr18 (9033050-9032883) | |
| 692-827, gnl|xenTro1|scaffold_859 (13719-13572) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| cag (0.151194) |