Ss1.1-Utr1-UTR01G050081.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGATGTCCGCGCGAGGCGGCGGCGGTAGCGGCGGCTGTGAGGAGAAGTCGGCTTCCACC GCAACGTTCTTTGGCAAAGCGCACCTGCTAGGCCGAGGGGTCCACCATGTTCTCCTTCAA CATGTTTGACCACCCAATTCCCCGGGTCTTCCAGAACCGCTTCTCCACGCAGTACCGCTG CTTCTCTGTGTCCATGCTCGCCGGGCCTAATGACAGGTCAGATGTGGAGAAAGGAGGGAA GATAATTATGCCGCCTTCAGCCCTCGACCAACTCAGCCGACTTAACATCACCTACCCCAT GCTGTTCAAGCTGACCAACAAGAACTCGGACCGCATGACGCACTGTGGGGTGCTGGAGTT TGTGGCTGACGAGGGCATCTGCTACCTTCCTCACTGGATGATGCAGAACCTGCTGCTGGA GGAGGGGGGCCTGGTTCAGGTGGAGAGCGTCAACCTGCAGGTGGCCACATACTCCAAGTT CCAGCCCCAGAGCCCGGATTTCCTGGACATCACCAACCCCAAGGCTGTATTAGAAAACGC ACTGAGAAACTTTGCCTGTCTGACCACCGGGGATGTGATTGCCATCAACTACAACGAGAA GATCTACGAGCTTCGGGTGATGGAGACCAAGCCTGACAAGGCTGTGTCCATCATTGAATG CGACATGAATGTGGACTTTGATGCTCCACTTGGCTACAAAGAGCCTGAGAGACAGATCCA GCACGAGGAGTCAGCCGAGGGCGAGGCTGACCATGGAGGCTACGCTGGGGAGCTGGGCTT CCGGGCCTTCTCAGGCTCTGGGAACAGACTGGACGGGAAGAAGAAAGGTGTAGAGCCTAG CCCCTCCCCCATCAAGCCTGGAGACATCAAAAGAGGAATTCCCAATTATGAATTTAAACT CGGTAAGATCACGTTCATCAGAAATTCACGTCCACTGGTCAAAAAGGTTGAAGAGGATGA AGCTGGAGGCAGATTCGTCGCCTTCTCTGGAGAAGGGCAGTCATTGCGTAAAAAGGGAAG AAAGCCATAGGTTAGGACTGTTGGCTGATTGGAAAATAAAGTAATTGCAACATGATGGCT TTTAGTTACTGGCTCTGATGGGGATGCTCTGTCACCTTAGGTTTGTTTAGAATTACCTAA GAATTCTCAGGTCTGACTGGAAGTGGAACAGCAGGCCGTGGAGTTGTGCACCTGATTGGG GGAAGGAGCAGCCATCTCGGGTCACCACTCCCTGCTTTCAGCCCTCAAGGCTCGCTCACT GCCTCAGCTGCAGCAGAGTCCCCCAATTCCTGTTCAAAACCTGTGAAGGGATTGAACTGC TCCAAGCTGTGGTGTTTTTTCTTCATTTGACCTTTCTTTTTCCAGGTCATAGTTGTCATA GTTGCCTTTGGCCTGGAAAAAAAAGTGGTTTAAACAGATAAGTGCTCTCTATAAATAGTG GCTCTCCCATTACTCTGGCTGCAATTTAAGTATTTGAGGAAGGGTGTTTCTATTTTGATT TTACAATGTTGGTTTGTTTGTTTTTTTCATCACTAAAAGACATTACTCGGAAAAGCTGAT CTGAAAGCATTTCCACTTTTATTTTGATTTCATTTGGAAATAACTGCCTTCTTAATCAGT CTCTTCTGCTGTAAAACAACATGGTGAAGCACATATATGAGTATTAGAATAAATGAAAGC TAAAGAAGTGTTCTTTCTCCTTCCCTACCCACCACTCCCAGTTTTAATGTATTAAATCAT TAAAGTTAAAAATGGCCTGTCTTTATTTACTAGTATTAATTTAGTCTCACTTTCTATAAT ATGAGCTCTTTTGACATGTTAATCCAATTATTTTAATCTTTTGTTCCTTAAAACTAATTC TGAATCAAGAATTTCAAATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGATGTCCGCGCGAGGCGGCGGCGGTAGCGGCGGCTGTGAGGAGAAGTCGGCTTCCACC GCAACGTTCTTTGGCAAAGCGCACCTGCTAGGCCGAGGGGTCCACCATGTTCTCCTTCAA CATGTTTGACCACCCAATTCCCCGGGTCTTCCAGAACCGCTTCTCCACGCAGTACCGCTG CTTCTCTGTGTCCATGCTCGCCGGGCCTAATGACAGGTCAGATGTGGAGAAAGGAGGGAA GATAATTATGCCGCCTTCAGCCCTCGACCAACTCAGCCGACTTAACATCACCTACCCCAT GCTGTTCAAGCTGACCAACAAGAACTCGGACCGCATGACGCACTGTGGGGTGCTGGAGTT TGTGGCTGACGAGGGCATCTGCTACCTTCCTCACTGGATGATGCAGAACCTGCTGCTGGA GGAGGGGGGCCTGGTTCAGGTGGAGAGCGTCAACCTGCAGGTGGCCACATACTCCAAGTT CCAGCCCCAGAGCCCGGATTTCCTGGACATCACCAACCCCAAGGCTGTATTAGAAAACGC ACTGAGAAACTTTGCCTGTCTGACCACCGGGGATGTGATTGCCATCAACTACAACGAGAA GATCTACGAGCTTCGGGTGATGGAGACCAAGCCTGACAAGGCTGTGTCCATCATTGAATG CGACATGAATGTGGACTTTGATGCTCCACTTGGCTACAAAGAGCCTGAGAGACAGATCCA GCACGAGGAGTCAGCCGAGGGCGAGGCTGACCATGGAGGCTACGCTGGGGAGCTGGGCTT CCGGGCCTTCTCAGGCTCTGGGAACAGACTGGACGGGAAGAAGAAAGGTGTAGAGCCTAG CCCCTCCCCCATCAAGCCTGGAGACATCAAAAGAGGAATTCCCAATTATGAATTTAAACT CGGTAAGATCACGTTCATCAGAAATTCACGTCCACTGGTCAAAAAGGTTGAAGAGGATGA AGCTGGAGGCAGATTCGTCGCCTTCTCTGGAGAAGGGCAGTCATTGCGTAAAAAGGGAAG AAAGCCATAGGTTAGGACTGTTGGCTGATTGGAAAATAAAGTAATTGCAACATGATGGCT TTTAGTTACTGGCTCTGATGGGGATGCTCTGTCACCTTAGGTTTGTTTAGAATTACCTAA GAATTCTCAGGTCTGACTGGAAGTGGAACAGCAGGCCGTGGAGTTGTGCACCTGATTGGG GGAAGGAGCAGCCATCTCGGGTCACCACTCCCTGCTTTCAGCCCTCAAGGCTCGCTCACT GCCTCAGCTGCAGCAGAGTCCCCCAATTCCTGTTCAAAACCTGTGAAGGGATTGAACTGC TCCAAGCTGTGGTGTTTTTTCTTCATTTGACCTTTCTTTTTCCAGGTCATAGTTGTCATA GTTGCCTTTGGCCTGGAAAAAAAAGTGGTTTAAACAGATAAGTGCTCTCTATAAATAGTG GCTCTCCCATTACTCTGGCTGCAATTTAAGTATTTGAGGAAGGGTGTTTCTATTTTGATT TTACAATGTTGGTTTGTTTGTTTTTTTCATCACTAAAAGACATTACTCGGAAAAGCTGAT CTGAAAGCATTTCCACTTTTATTTTGATTTCATTTGGAAATAACTGCCTTCTTAATCAGT CTCTTCTGCTGTAAAACAACATGGTGAAGCACATATATGAGTATTAGAATAAATGAAAGC TAAAGAAGTGTTCTTTCTCCTTCCCTACCCACCACTCCCAGTTTTAATGTATTAAATCAT TAAAGTTAAAAATGGCCTGTCTTTATTTACTAGTATTAATTTAGTCTCACTTTCTATAAT ATGAGCTCTTTTGACATGTTAATCCAATTATTTTAATCTTTTGTTCCTTAAAACTAATTC TGAATCAAGAATTTCAAATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1299-1449, - strand, RNAz p=0.563566 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1299-1449, - strand, RNAz p=0.563566 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 109-257, gnl|bosTau2|chr17 (43879113-43878966) | |
| 109-257, gnl|Hg17|chr22 (17837680-17837532) | |
| 109-257, gnl|Mm7|chr16_random (3225401-3225252) | |
| 397-528, gnl|bosTau2|chr17 (43876000-43875869) | |
| 397-528, gnl|canFam2|chr26 (32816651-32816483) | |
| 397-528, gnl|canFam2|chr26 (32816629-32816499) | |
| 397-528, gnl|danRer3|chr8 (97678-97846) | |
| 397-528, gnl|danRer3|chr8 (97700-97830) | |
| 397-528, gnl|dasNov1|scaffold_39755 (8893-9062) | |
| 397-528, gnl|dasNov1|scaffold_398 (159121-159022) | |
| 397-528, gnl|echTel1|scaffold_253599 (7473-7304) | |
| 397-528, gnl|echTel1|scaffold_253599 (7452-7322) | |
| 397-528, gnl|fr1|chrUn (1408787-1408638) | |
| 397-528, gnl|fr1|chrUn (1408785-1408655) | |
| 397-528, gnl|galGal2|chr15 (651234-651385) | |
| 397-528, gnl|galGal2|chr15 (651242-651372) | |
| 397-528, gnl|hg17|chr18 (22665976-22666106) | |
| 397-528, gnl|hg17|chr22 (17829929-17830098) | |
| 397-528, gnl|Hg17|chr22 (17830081-17829950) | |
| 397-528, gnl|loxAfr1|scaffold_3565 (130765-130666) | |
| 397-528, gnl|loxAfr1|scaffold_55399 (7605-7436) | |
| 397-528, gnl|mm7|chr16 (18370922-18370758) | |
| 397-528, gnl|mm7|chr16 (18370903-18370773) | |
| 397-528, gnl|Mm7|chr16_random (3219192-3219061) | |
| 397-528, gnl|monDom2|scaffold_141 (2090284-2090443) | |
| 397-528, gnl|monDom2|scaffold_141 (2090294-2090424) | |
| 397-528, gnl|oryCun1|scaffold_111574 (4145-4311) | |
| 397-528, gnl|oryCun1|scaffold_209211 (8121-8051) | |
| 397-528, gnl|panTro1|chr17 (18597429-18597559) | |
| 397-528, gnl|panTro1|chr23 (17804815-17804984) | |
| 397-528, gnl|rheMac2|chr10 (63513210-63513379) | |
| 397-528, gnl|rheMac2|chr18 (19825229-19825359) | |
| 397-528, gnl|rn3|chr11_random (1187835-1187997) | |
| 397-528, gnl|rn3|chr11_random (1187852-1187982) | |
| 397-528, gnl|tetNig1|chr12 (5974102-5973952) | |
| 397-528, gnl|tetNig1|chr12 (5974099-5973969) | |
| 397-528, gnl|xenTro1|scaffold_118 (397069-397228) | |
| 397-528, gnl|xenTro1|scaffold_118 (397077-397207) | |
| 773-873, gnl|bosTau2|chr17 (43871567-43871467) | |
| 773-873, gnl|danRer3|chr8 (94531-94644) | |
| 773-873, gnl|dasNov1|scaffold_39755 (259-375) | |
| 773-873, gnl|dasNov1|scaffold_398 (159403-159325) | |
| 773-873, gnl|echTel1|scaffold_253599 (14617-14502) | |
| 773-873, gnl|echTel1|scaffold_253599 (14600-14520) | |
| 773-873, gnl|fr1|chrUn (1409506-1409412) | |
| 773-873, gnl|fr1|chrUn (1409494-1409414) | |
| 773-873, gnl|galGal2|chr15 (648402-648518) | |
| 773-873, gnl|galGal2|chr15 (648419-648499) | |
| 773-873, gnl|hg17|chr18 (22665644-22665712) | |
| 773-873, gnl|hg17|chr22 (17817748-17817864) | |
| 773-873, gnl|Hg17|chr22 (17817860-17817757) | |
| 773-873, gnl|loxAfr1|scaffold_6154 (38164-38048) | |
| 773-873, gnl|loxAfr1|scaffold_6154 (38147-38067) | |
| 773-873, gnl|mm7|chr16 (18376850-18376733) | |
| 773-873, gnl|mm7|chr16 (18376832-18376754) | |
| 773-873, gnl|Mm7|chr16_random (3213221-3213124) | |
| 773-873, gnl|monDom2|scaffold_141 (2081876-2082015) | |
| 773-873, gnl|oryCun1|scaffold_209211 (8388-8312) | |
| 773-873, gnl|panTro1|chr17 (18597097-18597165) | |
| 773-873, gnl|panTro1|chr23 (17792635-17792751) | |
| 773-873, gnl|rheMac2|chr10 (63499950-63500066) | |
| 773-873, gnl|rheMac2|chr18 (19824885-19824965) | |
| 773-873, gnl|rn3|chr11_random (1179199-1179316) | |
| 773-873, gnl|rn3|chr11_random (1179216-1179296) | |
| 773-873, gnl|tetNig1|chr12 (5974804-5974709) | |
| 773-873, gnl|tetNig1|chr12 (5974769-5974715) | |
| 773-873, gnl|xenTro1|scaffold_118 (391764-391844) | |
| 1263-1884, gnl|bosTau2|chr17 (43868088-43867489) | |
| 1263-1884, gnl|Hg17|chr22 (17812464-17811824) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-257, gnl|bosTau2|chr17 (43879113-43878966) | |
| 109-257, gnl|Hg17|chr22 (17837680-17837532) | |
| 109-257, gnl|Mm7|chr16_random (3225401-3225252) | |
| 397-528, gnl|bosTau2|chr17 (43876000-43875869) | |
| 397-528, gnl|canFam2|chr26 (32816651-32816483) | |
| 397-528, gnl|canFam2|chr26 (32816629-32816499) | |
| 397-528, gnl|danRer3|chr8 (97678-97846) | |
| 397-528, gnl|danRer3|chr8 (97700-97830) | |
| 397-528, gnl|dasNov1|scaffold_39755 (8893-9062) | |
| 397-528, gnl|dasNov1|scaffold_398 (159121-159022) | |
| 397-528, gnl|echTel1|scaffold_253599 (7473-7304) | |
| 397-528, gnl|echTel1|scaffold_253599 (7452-7322) | |
| 397-528, gnl|fr1|chrUn (1408787-1408638) | |
| 397-528, gnl|fr1|chrUn (1408785-1408655) | |
| 397-528, gnl|galGal2|chr15 (651234-651385) | |
| 397-528, gnl|galGal2|chr15 (651242-651372) | |
| 397-528, gnl|hg17|chr18 (22665976-22666106) | |
| 397-528, gnl|hg17|chr22 (17829929-17830098) | |
| 397-528, gnl|Hg17|chr22 (17830081-17829950) | |
| 397-528, gnl|loxAfr1|scaffold_3565 (130765-130666) | |
| 397-528, gnl|loxAfr1|scaffold_55399 (7605-7436) | |
| 397-528, gnl|mm7|chr16 (18370922-18370758) | |
| 397-528, gnl|mm7|chr16 (18370903-18370773) | |
| 397-528, gnl|Mm7|chr16_random (3219192-3219061) | |
| 397-528, gnl|monDom2|scaffold_141 (2090284-2090443) | |
| 397-528, gnl|monDom2|scaffold_141 (2090294-2090424) | |
| 397-528, gnl|oryCun1|scaffold_111574 (4145-4311) | |
| 397-528, gnl|oryCun1|scaffold_209211 (8121-8051) | |
| 397-528, gnl|panTro1|chr17 (18597429-18597559) | |
| 397-528, gnl|panTro1|chr23 (17804815-17804984) | |
| 397-528, gnl|rheMac2|chr10 (63513210-63513379) | |
| 397-528, gnl|rheMac2|chr18 (19825229-19825359) | |
| 397-528, gnl|rn3|chr11_random (1187835-1187997) | |
| 397-528, gnl|rn3|chr11_random (1187852-1187982) | |
| 397-528, gnl|tetNig1|chr12 (5974102-5973952) | |
| 397-528, gnl|tetNig1|chr12 (5974099-5973969) | |
| 397-528, gnl|xenTro1|scaffold_118 (397069-397228) | |
| 397-528, gnl|xenTro1|scaffold_118 (397077-397207) | |
| 773-873, gnl|bosTau2|chr17 (43871567-43871467) | |
| 773-873, gnl|danRer3|chr8 (94531-94644) | |
| 773-873, gnl|dasNov1|scaffold_39755 (259-375) | |
| 773-873, gnl|dasNov1|scaffold_398 (159403-159325) | |
| 773-873, gnl|echTel1|scaffold_253599 (14617-14502) | |
| 773-873, gnl|echTel1|scaffold_253599 (14600-14520) | |
| 773-873, gnl|fr1|chrUn (1409506-1409412) | |
| 773-873, gnl|fr1|chrUn (1409494-1409414) | |
| 773-873, gnl|galGal2|chr15 (648402-648518) | |
| 773-873, gnl|galGal2|chr15 (648419-648499) | |
| 773-873, gnl|hg17|chr18 (22665644-22665712) | |
| 773-873, gnl|hg17|chr22 (17817748-17817864) | |
| 773-873, gnl|Hg17|chr22 (17817860-17817757) | |
| 773-873, gnl|loxAfr1|scaffold_6154 (38164-38048) | |
| 773-873, gnl|loxAfr1|scaffold_6154 (38147-38067) | |
| 773-873, gnl|mm7|chr16 (18376850-18376733) | |
| 773-873, gnl|mm7|chr16 (18376832-18376754) | |
| 773-873, gnl|Mm7|chr16_random (3213221-3213124) | |
| 773-873, gnl|monDom2|scaffold_141 (2081876-2082015) | |
| 773-873, gnl|oryCun1|scaffold_209211 (8388-8312) | |
| 773-873, gnl|panTro1|chr17 (18597097-18597165) | |
| 773-873, gnl|panTro1|chr23 (17792635-17792751) | |
| 773-873, gnl|rheMac2|chr10 (63499950-63500066) | |
| 773-873, gnl|rheMac2|chr18 (19824885-19824965) | |
| 773-873, gnl|rn3|chr11_random (1179199-1179316) | |
| 773-873, gnl|rn3|chr11_random (1179216-1179296) | |
| 773-873, gnl|tetNig1|chr12 (5974804-5974709) | |
| 773-873, gnl|tetNig1|chr12 (5974769-5974715) | |
| 773-873, gnl|xenTro1|scaffold_118 (391764-391844) | |
| 1263-1884, gnl|bosTau2|chr17 (43868088-43867489) | |
| 1263-1884, gnl|Hg17|chr22 (17812464-17811824) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cki (0.660939) | |
| sin (0.349895) | |
| cbl (0.344392) | |
| hyp (0.285673) | |
| nca (0.273748) | |
| fce (0.271592) | |
| cov (0.264306) | |
| bla (0.248694) | |
| jca (0.22792) | |
| mas (0.210305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.660939) | |
| sin (0.349895) | |
| cbl (0.344392) | |
| hyp (0.285673) | |
| nca (0.273748) | |
| fce (0.271592) | |
| cov (0.264306) | |
| bla (0.248694) | |
| jca (0.22792) | |
| mas (0.210305) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) |