Ss1.1-Utr1-UTR01G060098.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAACTGGAACTTTATAGCAATGTGCTGTTATCTTTCCTGGGGTCAGTGCCTGAGAAATA CCCCTTGAAAACTTCCCGTCTCAACAGTGAGGTCACCACCCCTCTGGGGCTGAACTCCCG GTGTGTGCCAGAGGAGGGTCTGTGTTTGGCTGAGGGGCTGTAGAGTAGACCCCAAGGTCT CCAGGATGGATCCCAAGGCCAGAAGGTACAAAATCAGGATTCTGAATCCGGTGGCCACCT CTTCACACTCTTCCCTGGAGCAGCTGCCTCCGGAATGGCTCAAAGTCCTCGGGAACTGTG TCATTGCATCGATACTGGAGATTGGACCAAATGATGTTTTCTTGGGAGAAGCAGAATACA CCAAGACGCCCCCCGCGCATGGATGTGTCAATGATCACCCCAGAATCCGCCACTAGCTGG GGACCCTCATAAAGCTTCACCCGAATGTAGCCAACTTGAGGCCGGTGCAGCAACTGCCAG CGGTAGGAGGTCTTGTCACGCCAGCCCACATTTCGTGGGTCAGTCCACAGCAGCCGTACC TGATCAGGGGTGTGGCCCGTATGCCACAGGGCATTCCGGAGGTGCTCACCTGGGCCAGAC ACCGATGTCACTGCCTTGAGCTGTAGCCCGGGCTGGGCAACAGCCCGGAAAGGTGTGGCC TGCCAGTAGGTCTGCTCCGTTTGCTTCCACATGACTACGTAGAAGCGGCCGCTGTCCTGA TAGCTGAAGAGGAAGCCTGCGTAGTCATCATCCGTCACTGTGTTCACGTGGAAGGTGCCT TCAAAGTCCACACCATTGAAGGCCGTATATCCCACTGCTAGGCCCGGGTCACTGTTCATG GTCTGAACGATCTCCATGCCCTGGTTGAGCACGACCCAGTTGGGGTCAATCTGAGCATCA CCCTCAGGATCCAGGACGACGGTCTGATAGGCCCGGAAATCCGTGAGGGTCACCTCCGCG CTCTCGGGGCACACATCCAGGGGGTCGACTACTGCGTCGTTGTCGAAGTCATCCTCACAC ACATCACCAACACCATTGCCATCTGAATCTTTCTGATTGGGATTGGGTACCAGGCGACAG TTATCGGGACCAGGAGGCACGTAATCTGGGACACCGTCATTGTCATCGTCCCCATCACAC TCATCTCCAAGTCCATCATTGTCTGAGTCCAGCTGGGAGCTATTGGGCAGCTGCGGGCAA TTGTCCTTGGTGTCCTGATGTCCATCCCCATCGCTGTCTTCATTGGTGTCACAGACATCC CCCACCAGGTCACTGTCTGCATCTGTCTGGGTAGGATTGCTCATTTCAGGGCAGCTGTCG CAAGCATCTCCCACCCCGTCTTCATCCCTGTCTGTCTGCAGGGGGTTGGGGACTTTAGGG CAATTGTCCAGTCCATTGGGGATGCCATCCCCATCCACGTCGTTGTCACAGGCATCCCCT TCCCCATTGCCATCTGTGTCCTTCTGGTCATTGTTGGGAACGTTGGGGCAGTTGTCACAG GCATCACCAAATGAATCTGTATCTGAGTTTTGCTGGTCCTTGTTGGGGAACAGCCGGCAA TTGTCCTCAACATTCTTGATCCCGTCCCCATCAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAACTGGAACTTTATAGCAATGTGCTGTTATCTTTCCTGGGGTCAGTGCCTGAGAAATA CCCCTTGAAAACTTCCCGTCTCAACAGTGAGGTCACCACCCCTCTGGGGCTGAACTCCCG GTGTGTGCCAGAGGAGGGTCTGTGTTTGGCTGAGGGGCTGTAGAGTAGACCCCAAGGTCT CCAGGATGGATCCCAAGGCCAGAAGGTACAAAATCAGGATTCTGAATCCGGTGGCCACCT CTTCACACTCTTCCCTGGAGCAGCTGCCTCCGGAATGGCTCAAAGTCCTCGGGAACTGTG TCATTGCATCGATACTGGAGATTGGACCAAATGATGTTTTCTTGGGAGAAGCAGAATACA CCAAGACGCCCCCCGCGCATGGATGTGTCAATGATCACCCCAGAATCCGCCACTAGCTGG GGACCCTCATAAAGCTTCACCCGAATGTAGCCAACTTGAGGCCGGTGCAGCAACTGCCAG CGGTAGGAGGTCTTGTCACGCCAGCCCACATTTCGTGGGTCAGTCCACAGCAGCCGTACC TGATCAGGGGTGTGGCCCGTATGCCACAGGGCATTCCGGAGGTGCTCACCTGGGCCAGAC ACCGATGTCACTGCCTTGAGCTGTAGCCCGGGCTGGGCAACAGCCCGGAAAGGTGTGGCC TGCCAGTAGGTCTGCTCCGTTTGCTTCCACATGACTACGTAGAAGCGGCCGCTGTCCTGA TAGCTGAAGAGGAAGCCTGCGTAGTCATCATCCGTCACTGTGTTCACGTGGAAGGTGCCT TCAAAGTCCACACCATTGAAGGCCGTATATCCCACTGCTAGGCCCGGGTCACTGTTCATG GTCTGAACGATCTCCATGCCCTGGTTGAGCACGACCCAGTTGGGGTCAATCTGAGCATCA CCCTCAGGATCCAGGACGACGGTCTGATAGGCCCGGAAATCCGTGAGGGTCACCTCCGCG CTCTCGGGGCACACATCCAGGGGGTCGACTACTGCGTCGTTGTCGAAGTCATCCTCACAC ACATCACCAACACCATTGCCATCTGAATCTTTCTGATTGGGATTGGGTACCAGGCGACAG TTATCGGGACCAGGAGGCACGTAATCTGGGACACCGTCATTGTCATCGTCCCCATCACAC TCATCTCCAAGTCCATCATTGTCTGAGTCCAGCTGGGAGCTATTGGGCAGCTGCGGGCAA TTGTCCTTGGTGTCCTGATGTCCATCCCCATCGCTGTCTTCATTGGTGTCACAGACATCC CCCACCAGGTCACTGTCTGCATCTGTCTGGGTAGGATTGCTCATTTCAGGGCAGCTGTCG CAAGCATCTCCCACCCCGTCTTCATCCCTGTCTGTCTGCAGGGGGTTGGGGACTTTAGGG CAATTGTCCAGTCCATTGGGGATGCCATCCCCATCCACGTCGTTGTCACAGGCATCCCCT TCCCCATTGCCATCTGTGTCCTTCTGGTCATTGTTGGGAACGTTGGGGCAGTTGTCACAG GCATCACCAAATGAATCTGTATCTGAGTTTTGCTGGTCCTTGTTGGGGAACAGCCGGCAA TTGTCCTCAACATTCTTGATCCCGTCCCCATCAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 899-1018, - strand, RNAz p=0.521485 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 899-1018, - strand, RNAz p=0.521485 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 302-442, gnl|bosTau2|chr10 (5019110-5019250) | |
| 302-442, gnl|Hg17|chr5 (79414124-79413984) | |
| 302-442, gnl|Mm7|chr13 (89814748-89814888) | |
| 614-812, gnl|bosTau2|chr10 (5022744-5022942) | |
| 614-812, gnl|canFam2|chr3 (29831399-29831272) | |
| 614-812, gnl|danRer3|chr5 (57145749-57145622) | |
| 614-812, gnl|dasNov1|scaffold_73 (9973-9845) | |
| 614-812, gnl|echTel1|scaffold_317528 (100571-100698) | |
| 614-812, gnl|fr1|chrUn (92120212-92120085) | |
| 614-812, gnl|galGal2|chrZ (5247219-5247092) | |
| 614-812, gnl|hg17|chr5 (79410639-79410766) | |
| 614-812, gnl|Hg17|chr5 (79410838-79410640) | |
| 614-812, gnl|loxAfr1|scaffold_9198 (10617-10490) | |
| 614-812, gnl|mm7|chr13 (89817683-89817556) | |
| 614-812, gnl|Mm7|chr13 (89817482-89817680) | |
| 614-812, gnl|monDom2|scaffold_27 (35786932-35786805) | |
| 614-812, gnl|oryCun1|scaffold_186394 (7800-7927) | |
| 614-812, gnl|panTro1|chr4 (35776064-35775956) | |
| 614-812, gnl|rheMac2|chr6 (76282837-76282964) | |
| 614-812, gnl|rn3|chr2 (22934235-22934108) | |
| 614-812, gnl|tetNig1|chr4 (3927439-3927566) | |
| 614-812, gnl|xenTro1|scaffold_183 (1242494-1242367) | |
| 860-1040, gnl|bosTau2|chr10 (5024658-5024838) | |
| 860-1040, gnl|Hg17|chr5 (79409807-79409627) | |
| 860-1040, gnl|Mm7|chr13 (89818801-89818981) | |
| 1048-1237, gnl|bosTau2|chr10 (5025699-5025888) | |
| 1048-1237, gnl|Hg17|chr5 (79408619-79408430) | |
| 1048-1237, gnl|Mm7|chr13 (89820324-89820513) | |
| 1405-1570, gnl|bosTau2|chr10 (5031245-5031410) | |
| 1405-1570, gnl|canFam2|chr3 (29839118-29838937) | |
| 1405-1570, gnl|danRer3|chr5 (57154976-57154795) | |
| 1405-1570, gnl|dasNov1|scaffold_127166 (931-762) | |
| 1405-1570, gnl|echTel1|scaffold_317528 (89726-89907) | |
| 1405-1570, gnl|fr1|chrUn (92122259-92122084) | |
| 1405-1570, gnl|galGal2|chrZ (5252411-5252227) | |
| 1405-1570, gnl|hg17|chr5 (79402593-79402774) | |
| 1405-1570, gnl|Hg17|chr5 (79402760-79402595) | |
| 1405-1570, gnl|loxAfr1|scaffold_9198 (18259-18077) | |
| 1405-1570, gnl|mm7|chr13 (89825322-89825141) | |
| 1405-1570, gnl|Mm7|chr13 (89825153-89825318) | |
| 1405-1570, gnl|monDom2|scaffold_27 (35803272-35803091) | |
| 1405-1570, gnl|oryCun1|scaffold_173728 (59607-59782) | |
| 1405-1570, gnl|panTro1|chr4 (35784075-35783894) | |
| 1405-1570, gnl|rheMac2|chr6 (76275353-76275534) | |
| 1405-1570, gnl|rn3|chr2 (22942691-22942510) | |
| 1405-1570, gnl|tetNig1|chr4 (3925062-3925233) | |
| 1405-1570, gnl|xenTro1|scaffold_183 (1246727-1246546) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 302-442, gnl|bosTau2|chr10 (5019110-5019250) | |
| 302-442, gnl|Hg17|chr5 (79414124-79413984) | |
| 302-442, gnl|Mm7|chr13 (89814748-89814888) | |
| 614-812, gnl|bosTau2|chr10 (5022744-5022942) | |
| 614-812, gnl|canFam2|chr3 (29831399-29831272) | |
| 614-812, gnl|danRer3|chr5 (57145749-57145622) | |
| 614-812, gnl|dasNov1|scaffold_73 (9973-9845) | |
| 614-812, gnl|echTel1|scaffold_317528 (100571-100698) | |
| 614-812, gnl|fr1|chrUn (92120212-92120085) | |
| 614-812, gnl|galGal2|chrZ (5247219-5247092) | |
| 614-812, gnl|hg17|chr5 (79410639-79410766) | |
| 614-812, gnl|Hg17|chr5 (79410838-79410640) | |
| 614-812, gnl|loxAfr1|scaffold_9198 (10617-10490) | |
| 614-812, gnl|mm7|chr13 (89817683-89817556) | |
| 614-812, gnl|Mm7|chr13 (89817482-89817680) | |
| 614-812, gnl|monDom2|scaffold_27 (35786932-35786805) | |
| 614-812, gnl|oryCun1|scaffold_186394 (7800-7927) | |
| 614-812, gnl|panTro1|chr4 (35776064-35775956) | |
| 614-812, gnl|rheMac2|chr6 (76282837-76282964) | |
| 614-812, gnl|rn3|chr2 (22934235-22934108) | |
| 614-812, gnl|tetNig1|chr4 (3927439-3927566) | |
| 614-812, gnl|xenTro1|scaffold_183 (1242494-1242367) | |
| 860-1040, gnl|bosTau2|chr10 (5024658-5024838) | |
| 860-1040, gnl|Hg17|chr5 (79409807-79409627) | |
| 860-1040, gnl|Mm7|chr13 (89818801-89818981) | |
| 1048-1237, gnl|bosTau2|chr10 (5025699-5025888) | |
| 1048-1237, gnl|Hg17|chr5 (79408619-79408430) | |
| 1048-1237, gnl|Mm7|chr13 (89820324-89820513) | |
| 1405-1570, gnl|bosTau2|chr10 (5031245-5031410) | |
| 1405-1570, gnl|canFam2|chr3 (29839118-29838937) | |
| 1405-1570, gnl|danRer3|chr5 (57154976-57154795) | |
| 1405-1570, gnl|dasNov1|scaffold_127166 (931-762) | |
| 1405-1570, gnl|echTel1|scaffold_317528 (89726-89907) | |
| 1405-1570, gnl|fr1|chrUn (92122259-92122084) | |
| 1405-1570, gnl|galGal2|chrZ (5252411-5252227) | |
| 1405-1570, gnl|hg17|chr5 (79402593-79402774) | |
| 1405-1570, gnl|Hg17|chr5 (79402760-79402595) | |
| 1405-1570, gnl|loxAfr1|scaffold_9198 (18259-18077) | |
| 1405-1570, gnl|mm7|chr13 (89825322-89825141) | |
| 1405-1570, gnl|Mm7|chr13 (89825153-89825318) | |
| 1405-1570, gnl|monDom2|scaffold_27 (35803272-35803091) | |
| 1405-1570, gnl|oryCun1|scaffold_173728 (59607-59782) | |
| 1405-1570, gnl|panTro1|chr4 (35784075-35783894) | |
| 1405-1570, gnl|rheMac2|chr6 (76275353-76275534) | |
| 1405-1570, gnl|rn3|chr2 (22942691-22942510) | |
| 1405-1570, gnl|tetNig1|chr4 (3925062-3925233) | |
| 1405-1570, gnl|xenTro1|scaffold_183 (1246727-1246546) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nca (0.273748) | |
| cov (0.264306) | |
| nep (0.183925) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.273748) | |
| cov (0.264306) | |
| nep (0.183925) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |