Non-Coding RNA Search

Ss1.1-Utr1-UTR01G070105.5

Sequence:


               
               TCATTTATTTACCCTTCCTGAAACAGAACTGGGGACAGTTAACATAGCTTGTGTGACAGC
GTGTGTGTCTAGCACACTTGGTGAAATCAAAACAAACTTCCGAATCGGAACAGAAGTTCT
GTTCTTTAAGGCTTGAACCTCGTCCACACGCGAGAGACTCGAACGGTCTCTGCGGGTGTA
TCTTCCCACTGCCCCCAAAGGCTCACCCACATCCATCCGAGAGGCCGTGCCAGTGATGCT
GAGGCGGCGGTGCCGGCGGTAGCTCTCTGCCAGGGACAGTGGCCTGAGGTCGGGGACTCG
CCCAGGCTGCAGCCTCGCCCTTAGGTCCATGTCCTCCCCAAGGATAAAACGACACTGTCA
GTGCCCCCCCCACTTTTTTACTTTAAAGCATTTGAGGGCTTAACTGTGTATAGTAGAAAT
ACTATTTTAAACTAAAATAATGATCTGTGTACAGATATTTGATAGAACTTGAAGTAAATT
TTGTAACTTCACTAAGTATGTTTTTAGGTTCCTCTGAGTTACTGCATATGGAAGAAGAAA
ACATGACACCACCAAGCCAAAGATGCTTTTTGTCTGTTTTTGTTGTTACCAGAGCAAAGA
GGATAATGCTTAGTGCTTCCCGGTGTCTTCTGGTTGTGCACAGATTAGCAGGATGGTAAA
TTCTGGAGTCTTCGGGGATGCTGAGTCAAAGCAGAGTTGAAGGATGCGCTGTCTAGGTCA
CCTCGAAGAGGGAAAGAAGCGTGAATGGCAGGAGAAAGGTTTGGTCCTTGATACCCTTTG
GCCTAGTTAAAATATGTGCCTTTTTTGGTGTGTTTTTTTCCATCACCACAAGATAAAAAG
GAACCATTTCAAGTCTTCAAAAAGTTCATTTATTGAAATTCTTCTGTGTAACAAAGCATA
CAAATGAGCAGATATAAAAAACATACTAACTCAACGCCTTTTCAGAAAACGTACAGCAGG
AGGTCTCCTCATCTAGTGTCAGACGTCAGCTCCAGCCCGTCCGTCTTGGCAAGGAAGGTG
GTGGTGACGGGGCCCCCCCGCGATCTGAGGTGGGGTCCGCTGGGAAGGTGGCGGTGCGTT
GTGGCATAATTCCGTACAAATCAGATGAATGTAAATATCTCTTTGTAAATCATTTATTTC
ACTCTGTTTCATCCAGGTCAGCAATCAGATTGTGGCATGCTGGGTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTTATTTACCCTTCCTGAAACAGAACTGGGGACAGTTAACATAGCTTGTGTGACAGC
GTGTGTGTCTAGCACACTTGGTGAAATCAAAACAAACTTCCGAATCGGAACAGAAGTTCT
GTTCTTTAAGGCTTGAACCTCGTCCACACGCGAGAGACTCGAACGGTCTCTGCGGGTGTA
TCTTCCCACTGCCCCCAAAGGCTCACCCACATCCATCCGAGAGGCCGTGCCAGTGATGCT
GAGGCGGCGGTGCCGGCGGTAGCTCTCTGCCAGGGACAGTGGCCTGAGGTCGGGGACTCG
CCCAGGCTGCAGCCTCGCCCTTAGGTCCATGTCCTCCCCAAGGATAAAACGACACTGTCA
GTGCCCCCCCCACTTTTTTACTTTAAAGCATTTGAGGGCTTAACTGTGTATAGTAGAAAT
ACTATTTTAAACTAAAATAATGATCTGTGTACAGATATTTGATAGAACTTGAAGTAAATT
TTGTAACTTCACTAAGTATGTTTTTAGGTTCCTCTGAGTTACTGCATATGGAAGAAGAAA
ACATGACACCACCAAGCCAAAGATGCTTTTTGTCTGTTTTTGTTGTTACCAGAGCAAAGA
GGATAATGCTTAGTGCTTCCCGGTGTCTTCTGGTTGTGCACAGATTAGCAGGATGGTAAA
TTCTGGAGTCTTCGGGGATGCTGAGTCAAAGCAGAGTTGAAGGATGCGCTGTCTAGGTCA
CCTCGAAGAGGGAAAGAAGCGTGAATGGCAGGAGAAAGGTTTGGTCCTTGATACCCTTTG
GCCTAGTTAAAATATGTGCCTTTTTTGGTGTGTTTTTTTCCATCACCACAAGATAAAAAG
GAACCATTTCAAGTCTTCAAAAAGTTCATTTATTGAAATTCTTCTGTGTAACAAAGCATA
CAAATGAGCAGATATAAAAAACATACTAACTCAACGCCTTTTCAGAAAACGTACAGCAGG
AGGTCTCCTCATCTAGTGTCAGACGTCAGCTCCAGCCCGTCCGTCTTGGCAAGGAAGGTG
GTGGTGACGGGGCCCCCCCGCGATCTGAGGTGGGGTCCGCTGGGAAGGTGGCGGTGCGTT
GTGGCATAATTCCGTACAAATCAGATGAATGTAAATATCTCTTTGTAAATCATTTATTTC
ACTCTGTTTCATCCAGGTCAGCAATCAGATTGTGGCATGCTGGGTAAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1188, gnl|bosTau2|chr16 (18785300-18786477)
               

               
               3-1188, gnl|Hg17|chr1 (239990305-239989098)
               

               
               3-1188, gnl|Mm7|chr1 (176987669-176986400)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1188, gnl|bosTau2|chr16 (18785300-18786477)
               

               
               3-1188, gnl|Hg17|chr1 (239990305-239989098)
               

               
               3-1188, gnl|Mm7|chr1 (176987669-176986400)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               tra (0.123092)

	3-1188, gnl\|bosTau2\|chr16 (18785300-18786477)
	3-1188, gnl\|Hg17\|chr1 (239990305-239989098)
	3-1188, gnl\|Mm7\|chr1 (176987669-176986400)

	med (0.232504)
	tes (0.207814)
	eye (0.170503)
	nco (0.161734)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	csk (0.140746)
	tra (0.123092)