Non-Coding RNA Search

Ss1.1-Utr1-UTR01G080086.5

Sequence:


               
               ATACCAACCACACCGTGCTGCCCGAGGCCTTGGAGCGGTGGCCCGTGTCCATGTTTGAGA
AGCTGCTGCCGCGGCATCTGGAGATCATCTACGCCATCAACCAGAGGCACCTGGATGTGA
GCACAGCCCCGCGGAGAGGGCCTGGGGGAGGGCGCTGCCTGCGGGGACCACCCTTCCTGT
CATGATGCAGGGGGCGGGCTGCACTGGACAACAGCCTGCCCTGCCCCCCACGACATCGAG
TCGTCTGGCCTGGGACAGGTGCTTTACATCTTGAACAGGATAGACTCTGTCTAGCAGAGG
ACGTCAGGGCTGGGGGCTGTCACTTGGCAGAGCTGTTGGCTTGTCCCCACACCTGGACTC
CTGCTCTGTGTGAGGGAGTCATGGGTCTTTTTTAAAACACTGCTGGAATTCCTGCAATGG
GTTAGTGATCTGACATCTCGGTGGCATTGCCAGTTTGATCACCAGACTGGCGCAGTGGGC
TAAAGATCTGCTGTCATTCCAGCTGTGAGGTAGGTTGCAGATGTGCCTCAGATTCCATCC
CTGGCCCGGGAACTTCCATATACTGTGGGTGCAGCAAAAAAAGGGGAAAAAATAAACAAT
TTAAAAACACTCCCACTTCTGAGCAGGGTTCAGTGTTAAGTATCTGTTCCTGAATGCCAG
AGGCCTTTGTCCTGAGACATGACAGCAGCATTTGGGTGATCTGGAAACAAAGCAGCATGC
CATTTCCCTGTTACCCACAGAGAGGACAGTGGATCACGAACAGGGGGCTTGGAGAGTTCC
CCAGTTAACAAACCGAACTGGTATCCATAAGGATGCGGGTTCAATCCCTGGCCTCAGCGG
GTCAAGGATCCAGTGTTGCTCTGAACTGTGGTGTAGGTCGCAGACGTGGCTCGGATCTGG
CGTGGCTGTGGCTGTGGCATAGGCCAGTGGCTACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCAACCACACCGTGCTGCCCGAGGCCTTGGAGCGGTGGCCCGTGTCCATGTTTGAGA
AGCTGCTGCCGCGGCATCTGGAGATCATCTACGCCATCAACCAGAGGCACCTGGATGTGA
GCACAGCCCCGCGGAGAGGGCCTGGGGGAGGGCGCTGCCTGCGGGGACCACCCTTCCTGT
CATGATGCAGGGGGCGGGCTGCACTGGACAACAGCCTGCCCTGCCCCCCACGACATCGAG
TCGTCTGGCCTGGGACAGGTGCTTTACATCTTGAACAGGATAGACTCTGTCTAGCAGAGG
ACGTCAGGGCTGGGGGCTGTCACTTGGCAGAGCTGTTGGCTTGTCCCCACACCTGGACTC
CTGCTCTGTGTGAGGGAGTCATGGGTCTTTTTTAAAACACTGCTGGAATTCCTGCAATGG
GTTAGTGATCTGACATCTCGGTGGCATTGCCAGTTTGATCACCAGACTGGCGCAGTGGGC
TAAAGATCTGCTGTCATTCCAGCTGTGAGGTAGGTTGCAGATGTGCCTCAGATTCCATCC
CTGGCCCGGGAACTTCCATATACTGTGGGTGCAGCAAAAAAAGGGGAAAAAATAAACAAT
TTAAAAACACTCCCACTTCTGAGCAGGGTTCAGTGTTAAGTATCTGTTCCTGAATGCCAG
AGGCCTTTGTCCTGAGACATGACAGCAGCATTTGGGTGATCTGGAAACAAAGCAGCATGC
CATTTCCCTGTTACCCACAGAGAGGACAGTGGATCACGAACAGGGGGCTTGGAGAGTTCC
CCAGTTAACAAACCGAACTGGTATCCATAAGGATGCGGGTTCAATCCCTGGCCTCAGCGG
GTCAAGGATCCAGTGTTGCTCTGAACTGTGGTGTAGGTCGCAGACGTGGCTCGGATCTGG
CGTGGCTGTGGCTGTGGCATAGGCCAGTGGCTACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-358, + strand, RNAz p=0.701094

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-358, + strand, RNAz p=0.701094

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-365, gnl|bosTau2|chr13 (27976644-27976299)
               

               
               3-365, gnl|Hg17|chr20 (25208935-25209235)
               


               
               611-767, gnl|bosTau2|chr13 (27976274-27976119)
               

               
               611-767, gnl|Mm7|chr2 (150557926-150558107)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-365, gnl|bosTau2|chr13 (27976644-27976299)
               

               
               3-365, gnl|Hg17|chr20 (25208935-25209235)
               


               
               611-767, gnl|bosTau2|chr13 (27976274-27976119)
               

               
               611-767, gnl|Mm7|chr2 (150557926-150558107)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hlv (0.278513)
               

               
               cje (0.165235)
               

               
               che (0.136314)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               cje (0.165235)
               

               
               che (0.136314)
               

               
               cty (0.10408)

	3-365, gnl\|bosTau2\|chr13 (27976644-27976299)
	3-365, gnl\|Hg17\|chr20 (25208935-25209235)

	611-767, gnl\|bosTau2\|chr13 (27976274-27976119)
	611-767, gnl\|Mm7\|chr2 (150557926-150558107)