Non-Coding RNA Search

Ss1.1-Utr1-UTR01G090091.5

Sequence:


               
               GAGCCGCCGCCGAGGACTCAGCAACCTCCCCCTTGAGCCCCCTCGCTTCCCGACGCTCCG
TCCCCCCTGCCCGCCTTCTCCCGCCGCCGCCGCCGCCTTCCGCAGGCCGTTTCCACCGAG
GAAAAGGAATCGTATCGTATGTCCGCTATCCAGAACCTCCACTCTTTCGACCCCTTTGCT
GATGCAAGTAAGGGTGATGATCTGCTTCCTGCTGGCACTGAGGATTATATCCATATAAGA
ATTCAACAGAGAAACGGCAGGAAGACCCTTACTACTGTCCAAGGGATCGCTGATGATTAC
GATAAAAAGAAACTAGTGAAGGCGTTTAAGAAGAAATTTGCCTGCAATGGCACTGTAATT
GAGCATCCAGAATATGGAGAAGTAATTCAGCTACAGGGTGACCAGCGCAAGAACATATGC
CAGTTCCTTGTAGAGATTGGACTGGCTAAGGACGACCAGCTGAAGGTTCATGGGTTTTAA
GTGCTTTTGGCTCACTGAAGCTTAAGTGAGGATTTCCTTGCAATGAGTAGAATTTCCCTT
CTGTCCCTTGTCACAAGTTTAAAAACCTCACAGCTTGTATAATGTAACCATTTGGGGTCT
GCTTTTAACTTGGACTAGTGTAACTCCTTCATGCAATAAACTGAAAAGAGCCATGCTGTC
TAGTCTTGAAGTCCCTCATTTAAACAGAGGTCAAGCAGTAGGCACCTGGCAGTGTCCCGC
CTGAAACAAAGCAATAAGGTGATGTTTCAGCCAAGTCCAGAGCCCCAAGATCACAGATGG
CTATGTCTGGCCAGAAGCTCCTCAGCGATCCCTCTCCAGAGTTTCCTGCCCTAAGAGAAT
GTCACCACCTGAACAGCCCTCGGTGAAGCTGAGTGGAGGATGGGGTAAGGCAACTGTACT
GCTAGAGGGAGCCTGTGGCCATCAGGGAAAGATCCCCTGGAGTCTCCAACGTGACCAGGT
GGGCAGAGCTTAGAGCAGAGGTGATAGGACACCTGGCTTGCCACCAAGGTCTTTTTGACC
AGACGTATCCTAGTTAATGGATGTCCAAATAGAAGGTGAGGCCAGCCTACTATCAGAGTT
AAACTTTTGACAAGGGAACAAGTTACAAACCAATGTATCCTTTCATGTAGCTGTAGAGCT
TGCAACTTACTAGCAACAGCTGCCCAATGCCATGTGAAGTAACAAACTGGTTTTTGGTGT
TGTTGGTTTTTTTCCCCCTTCAGTTTTAATGTTATGTAATGTATTTAAACCCTTATTTAA
ATAAAACTTGTTTTCAGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCGCCGCCGAGGACTCAGCAACCTCCCCCTTGAGCCCCCTCGCTTCCCGACGCTCCG
TCCCCCCTGCCCGCCTTCTCCCGCCGCCGCCGCCGCCTTCCGCAGGCCGTTTCCACCGAG
GAAAAGGAATCGTATCGTATGTCCGCTATCCAGAACCTCCACTCTTTCGACCCCTTTGCT
GATGCAAGTAAGGGTGATGATCTGCTTCCTGCTGGCACTGAGGATTATATCCATATAAGA
ATTCAACAGAGAAACGGCAGGAAGACCCTTACTACTGTCCAAGGGATCGCTGATGATTAC
GATAAAAAGAAACTAGTGAAGGCGTTTAAGAAGAAATTTGCCTGCAATGGCACTGTAATT
GAGCATCCAGAATATGGAGAAGTAATTCAGCTACAGGGTGACCAGCGCAAGAACATATGC
CAGTTCCTTGTAGAGATTGGACTGGCTAAGGACGACCAGCTGAAGGTTCATGGGTTTTAA
GTGCTTTTGGCTCACTGAAGCTTAAGTGAGGATTTCCTTGCAATGAGTAGAATTTCCCTT
CTGTCCCTTGTCACAAGTTTAAAAACCTCACAGCTTGTATAATGTAACCATTTGGGGTCT
GCTTTTAACTTGGACTAGTGTAACTCCTTCATGCAATAAACTGAAAAGAGCCATGCTGTC
TAGTCTTGAAGTCCCTCATTTAAACAGAGGTCAAGCAGTAGGCACCTGGCAGTGTCCCGC
CTGAAACAAAGCAATAAGGTGATGTTTCAGCCAAGTCCAGAGCCCCAAGATCACAGATGG
CTATGTCTGGCCAGAAGCTCCTCAGCGATCCCTCTCCAGAGTTTCCTGCCCTAAGAGAAT
GTCACCACCTGAACAGCCCTCGGTGAAGCTGAGTGGAGGATGGGGTAAGGCAACTGTACT
GCTAGAGGGAGCCTGTGGCCATCAGGGAAAGATCCCCTGGAGTCTCCAACGTGACCAGGT
GGGCAGAGCTTAGAGCAGAGGTGATAGGACACCTGGCTTGCCACCAAGGTCTTTTTGACC
AGACGTATCCTAGTTAATGGATGTCCAAATAGAAGGTGAGGCCAGCCTACTATCAGAGTT
AAACTTTTGACAAGGGAACAAGTTACAAACCAATGTATCCTTTCATGTAGCTGTAGAGCT
TGCAACTTACTAGCAACAGCTGCCCAATGCCATGTGAAGTAACAAACTGGTTTTTGGTGT
TGTTGGTTTTTTTCCCCCTTCAGTTTTAATGTTATGTAATGTATTTAAACCCTTATTTAA
ATAAAACTTGTTTTCAGAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5RFF4_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RFF4_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               168-323, - strand, RNAz p=0.85556
               

               
               338-448, - strand, RNAz p=0.775072

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-323, - strand, RNAz p=0.85556
               

               
               338-448, - strand, RNAz p=0.775072

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-656, gnl|bosTau2|chr10 (30323591-30324240)
               

               
               1-656, gnl|Hg17|chr17 (37098675-37100739)
               

               
               1-656, gnl|Mm7|chr7 (75659373-75658716)
               


               
               1028-1285, gnl|bosTau2|chr28 (32332017-32331760)
               

               
               1028-1285, gnl|Hg17|chr17 (37101182-37101422)
               

               
               1028-1285, gnl|Mm7|chr14 (37429209-37429436)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-656, gnl|bosTau2|chr10 (30323591-30324240)
               

               
               1-656, gnl|Hg17|chr17 (37098675-37100739)
               

               
               1-656, gnl|Mm7|chr7 (75659373-75658716)
               


               
               1028-1285, gnl|bosTau2|chr28 (32332017-32331760)
               

               
               1028-1285, gnl|Hg17|chr17 (37101182-37101422)
               

               
               1028-1285, gnl|Mm7|chr14 (37429209-37429436)

Expressed library(ies): 74 entry(ies)

More info

Expressed library(ies): 74 entry(ies)

Help | Less info


               
               ssp (2.0328)
               

               
               sme (1.83262)
               

               
               nmm (1.72643)
               

               
               amn (1.67084)
               

               
               pgl (1.54028)
               

               
               jca (1.36752)
               

               
               col (1.36505)
               

               
               mas (1.26183)
               

               
               ldo (1.16403)
               

               
               nep (1.10355)
               

               
               cov (1.05722)
               

               
               ton (1.053)
               

               
               cly (0.965135)
               

               
               nms (0.855432)
               

               
               che (0.817884)
               

               
               eli (0.759071)
               

               
               cag (0.755972)
               

               
               bla (0.746083)
               

               
               hyp (0.714184)
               

               
               pty (0.713572)
               

               
               ill (0.702371)
               

               
               fbs (0.701385)
               

               
               eje (0.691836)
               

               
               fhi (0.678311)
               

               
               ste (0.676041)
               

               
               ute (0.663922)
               

               
               cki (0.660939)
               

               
               cje (0.660939)
               

               
               hea (0.613497)
               

               
               nbm (0.595948)
               

               
               fcc (0.593354)
               

               
               med (0.58126)
               

               
               csk (0.562984)
               

               
               eye (0.511509)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               csp (0.483559)
               

               
               eru (0.480192)
               

               
               tbr (0.462535)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               sag (0.36543)
               

               
               clu (0.358938)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 74 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (2.0328)
               

               
               sme (1.83262)
               

               
               nmm (1.72643)
               

               
               amn (1.67084)
               

               
               pgl (1.54028)
               

               
               jca (1.36752)
               

               
               col (1.36505)
               

               
               mas (1.26183)
               

               
               ldo (1.16403)
               

               
               nep (1.10355)
               

               
               cov (1.05722)
               

               
               ton (1.053)
               

               
               cly (0.965135)
               

               
               nms (0.855432)
               

               
               che (0.817884)
               

               
               eli (0.759071)
               

               
               cag (0.755972)
               

               
               bla (0.746083)
               

               
               hyp (0.714184)
               

               
               pty (0.713572)
               

               
               ill (0.702371)
               

               
               fbs (0.701385)
               

               
               eje (0.691836)
               

               
               fhi (0.678311)
               

               
               ste (0.676041)
               

               
               ute (0.663922)
               

               
               cki (0.660939)
               

               
               cje (0.660939)
               

               
               hea (0.613497)
               

               
               nbm (0.595948)
               

               
               fcc (0.593354)
               

               
               med (0.58126)
               

               
               csk (0.562984)
               

               
               eye (0.511509)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               csp (0.483559)
               

               
               eru (0.480192)
               

               
               tbr (0.462535)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               sag (0.36543)
               

               
               clu (0.358938)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	168-323, - strand, RNAz p=0.85556
	338-448, - strand, RNAz p=0.775072

	1-656, gnl\|bosTau2\|chr10 (30323591-30324240)
	1-656, gnl\|Hg17\|chr17 (37098675-37100739)
	1-656, gnl\|Mm7\|chr7 (75659373-75658716)

	1028-1285, gnl\|bosTau2\|chr28 (32332017-32331760)
	1028-1285, gnl\|Hg17\|chr17 (37101182-37101422)
	1028-1285, gnl\|Mm7\|chr14 (37429209-37429436)

	ssp (2.0328)
	sme (1.83262)
	nmm (1.72643)
	amn (1.67084)
	pgl (1.54028)
	jca (1.36752)
	col (1.36505)
	mas (1.26183)
	ldo (1.16403)
	nep (1.10355)
	cov (1.05722)
	ton (1.053)
	cly (0.965135)
	nms (0.855432)
	che (0.817884)
	eli (0.759071)
	cag (0.755972)
	bla (0.746083)
	hyp (0.714184)
	pty (0.713572)
	ill (0.702371)
	fbs (0.701385)
	eje (0.691836)
	fhi (0.678311)
	ste (0.676041)
	ute (0.663922)
	cki (0.660939)
	cje (0.660939)
	hea (0.613497)
	nbm (0.595948)
	fcc (0.593354)
	med (0.58126)
	csk (0.562984)
	eye (0.511509)
	jej (0.494609)
	nco (0.485201)
	csp (0.483559)
	eru (0.480192)
	tbr (0.462535)
	cst (0.420109)
	hlv (0.417769)
	fli (0.405762)
	sag (0.36543)
	clu (0.358938)
	fty (0.351679)
	duo (0.345602)
	cut (0.339847)
	vin (0.332557)
	fco (0.314416)
	bfe (0.299715)
	cte (0.29274)
	lnt (0.284616)
	fce (0.271592)
	cbr (0.255951)
	sug (0.254582)
	ese (0.253004)
	cbl (0.229595)
	tes (0.207814)
	aor (0.195274)
	nlu (0.191681)
	sto (0.179824)
	mcp (0.170648)
	mga (0.160205)
	cli (0.152812)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	nca (0.136874)
	pla (0.133672)
	kid (0.129735)
	eep (0.122564)
	ecc (0.115035)
	spc (0.113366)