Non-Coding RNA Search

Ss1.1-Utr1-UTR01G090093.5

Sequence:


               
               TGGCGAAGCCGGCGCTGGGGTAGAGCGCGCCGCAGGGGGGAGATCGGGAAGCGCCCGATG
CCGGGCGGTCGGAGCCGTTGACCTGGGACGCCGCCGTCCGGGGCAGGACCGCGGAGCAGC
GGACCATCCCGTCGCCTTCGGTGCATGGGGCCCGGCTGAAGAGCCAGCATGGGCAACTGT
GTGGGGAGACAGCGCCGGGAGAGGCCGACCGCCCCGGGACACCCCCGCAAGCGAGCAGGA
CGCAATGAGCCCCTGAAGAAGGAGCGGCTGAAGTGGAAGAGCGACTATCCGATGACCGAC
GGGCAGCTGCGGAGCAAGCGGGATGAGTTCTGGGACACGGCGCCCGCCTTTGAGGGCCGC
AAGGAGATCTGGGACGCCCTCAAGGCTGCCGCCTACGCGGCTGAGGCCAATGACCACGAG
CTGGCCCAGGCCATCCTGGACGGAGCCAGCATCACCCTGCCTCACGGCACGCTCTGTGAA
TGCTACGATGAGCTGGGCAATCGCTACCAGCTACCCATCTACTGCCTCTCGCCGCCTGTG
AACCTGCTGCTGGAACACACCGAGGAGGAGAGCCCGGAGCCCCCCGAGCCCACCCCCAGC
GCGCGCCGAGAGTTCCCGCTGAAGGTGCGCCTCTCCACGGGCAAGGACGTGAGGCTCAGC
GCCAGCCTGCCTGACACAGTGGGGCAGCTCAAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGAAGCCGGCGCTGGGGTAGAGCGCGCCGCAGGGGGGAGATCGGGAAGCGCCCGATG
CCGGGCGGTCGGAGCCGTTGACCTGGGACGCCGCCGTCCGGGGCAGGACCGCGGAGCAGC
GGACCATCCCGTCGCCTTCGGTGCATGGGGCCCGGCTGAAGAGCCAGCATGGGCAACTGT
GTGGGGAGACAGCGCCGGGAGAGGCCGACCGCCCCGGGACACCCCCGCAAGCGAGCAGGA
CGCAATGAGCCCCTGAAGAAGGAGCGGCTGAAGTGGAAGAGCGACTATCCGATGACCGAC
GGGCAGCTGCGGAGCAAGCGGGATGAGTTCTGGGACACGGCGCCCGCCTTTGAGGGCCGC
AAGGAGATCTGGGACGCCCTCAAGGCTGCCGCCTACGCGGCTGAGGCCAATGACCACGAG
CTGGCCCAGGCCATCCTGGACGGAGCCAGCATCACCCTGCCTCACGGCACGCTCTGTGAA
TGCTACGATGAGCTGGGCAATCGCTACCAGCTACCCATCTACTGCCTCTCGCCGCCTGTG
AACCTGCTGCTGGAACACACCGAGGAGGAGAGCCCGGAGCCCCCCGAGCCCACCCCCAGC
GCGCGCCGAGAGTTCCCGCTGAAGGTGCGCCTCTCCACGGGCAAGGACGTGAGGCTCAGC
GCCAGCCTGCCTGACACAGTGGGGCAGCTCAAGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61557115|ref|NP_001013171.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61557115|ref|NP_001013171.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-169, gnl|bosTau2|chr26 (10583817-10583651)
               

               
               1-169, gnl|galGal2|chr6 (21453116-21452901)
               

               
               1-169, gnl|hg17|chr10 (99248704-99248925)
               

               
               1-169, gnl|Hg17|chr10 (99248794-99248951)
               

               
               1-169, gnl|mm7|chr19 (41875550-41875751)
               

               
               1-169, gnl|Mm7|chr19 (41875612-41875778)
               

               
               1-169, gnl|monDom2|scaffold_14 (24958092-24957856)
               

               
               1-169, gnl|oryCun1|scaffold_213917 (13803-14041)
               

               
               1-169, gnl|panTro1|chr8 (100985672-100985893)
               

               
               1-169, gnl|rheMac2|chr9 (97087386-97087618)
               


               
               236-467, gnl|bosTau2|chr26 (10535916-10535685)
               

               
               236-467, gnl|Hg17|chr10 (99317658-99317889)
               

               
               236-467, gnl|Mm7|chr19 (41925725-41925956)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-169, gnl|bosTau2|chr26 (10583817-10583651)
               

               
               1-169, gnl|galGal2|chr6 (21453116-21452901)
               

               
               1-169, gnl|hg17|chr10 (99248704-99248925)
               

               
               1-169, gnl|Hg17|chr10 (99248794-99248951)
               

               
               1-169, gnl|mm7|chr19 (41875550-41875751)
               

               
               1-169, gnl|Mm7|chr19 (41875612-41875778)
               

               
               1-169, gnl|monDom2|scaffold_14 (24958092-24957856)
               

               
               1-169, gnl|oryCun1|scaffold_213917 (13803-14041)
               

               
               1-169, gnl|panTro1|chr8 (100985672-100985893)
               

               
               1-169, gnl|rheMac2|chr9 (97087386-97087618)
               


               
               236-467, gnl|bosTau2|chr26 (10535916-10535685)
               

               
               236-467, gnl|Hg17|chr10 (99317658-99317889)
               

               
               236-467, gnl|Mm7|chr19 (41925725-41925956)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-169, gnl\|bosTau2\|chr26 (10583817-10583651)
	1-169, gnl\|galGal2\|chr6 (21453116-21452901)
	1-169, gnl\|hg17\|chr10 (99248704-99248925)
	1-169, gnl\|Hg17\|chr10 (99248794-99248951)
	1-169, gnl\|mm7\|chr19 (41875550-41875751)
	1-169, gnl\|Mm7\|chr19 (41875612-41875778)
	1-169, gnl\|monDom2\|scaffold_14 (24958092-24957856)
	1-169, gnl\|oryCun1\|scaffold_213917 (13803-14041)
	1-169, gnl\|panTro1\|chr8 (100985672-100985893)
	1-169, gnl\|rheMac2\|chr9 (97087386-97087618)

	236-467, gnl\|bosTau2\|chr26 (10535916-10535685)
	236-467, gnl\|Hg17\|chr10 (99317658-99317889)
	236-467, gnl\|Mm7\|chr19 (41925725-41925956)