Ss1.1-Utr1-UTR01G110089.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTCTTGAGCTACGGTGACTAAGATGGAATCGATTTTGGAGTCGCGGTCGGGACACTG GGCCGGGGGTCCGGCTCCTGGACAGTTCTACCGCATTCCTCCCACTCCTGGATCCATCGT GGACCCGGCATCCGTGCTCTATGGGAGTCCGATTACGCGCACCCAGAACCCCATGGTGAC CGGGACCTCGGTTCTGGGAGTCAAGTTTGAGGGCGGAGTGGTGATTGCAGCAGACATGCT GGGCTCCTATGGCTCCTTGGCTCGTTTCCGCAACATCTCTCGCATTATGCGAGTCAACAA CAGCACCATGCTGGGTGCTTCAGGAGACTACGCTGATTTCCAATATTTGAAGCAAGTTCT CGGCCAAATGGTGATTGATGAGGAGCTGCTGGGAGATGGACACAGCTATAGTCCTAAAGC TATCCATTCGTGGCTGACCAGGGCCATGTACAGCCGCCGCTCCAAGATGAACCCCCTGTG GAACACCATGGTCATCGGAGGCTATGCTGATGGAGAGAGCTTCCTGGGTTACGTGGACAT GCTTGGTGTAGCCTATGAAGCCCCTTCGCTGGCCACTGGTTATGGTGCATACCTGGCTCA GCCTCTGTTGCGAGAAGTTCTGGAGAAGCAGCCAGTGCTGAGCCAGGCCGAGGCCCGAGA GCTAGTGGAACGCTGCATGCGAGTGCTGTACTATCGAGATGCCCGTTCTTATAACAGGTT TCAAATTGCCACTGTAACCGAAAAAGGTGTTGAAATAGAAGGACCCCTGTCTGCAGAGAC CAACTGGGATATTGCCCACATGATCAGTGGCTTTGAATGAAATATAGATAGATGCATTTT CCAGAACTGAAGTGGTACCCTTCTTCTAACTTTGAACGTGGCTGGTTCAGAGATACAGTT CTTTTGTAAAATAAATAAATCCTTTAAAACAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTCTTGAGCTACGGTGACTAAGATGGAATCGATTTTGGAGTCGCGGTCGGGACACTG GGCCGGGGGTCCGGCTCCTGGACAGTTCTACCGCATTCCTCCCACTCCTGGATCCATCGT GGACCCGGCATCCGTGCTCTATGGGAGTCCGATTACGCGCACCCAGAACCCCATGGTGAC CGGGACCTCGGTTCTGGGAGTCAAGTTTGAGGGCGGAGTGGTGATTGCAGCAGACATGCT GGGCTCCTATGGCTCCTTGGCTCGTTTCCGCAACATCTCTCGCATTATGCGAGTCAACAA CAGCACCATGCTGGGTGCTTCAGGAGACTACGCTGATTTCCAATATTTGAAGCAAGTTCT CGGCCAAATGGTGATTGATGAGGAGCTGCTGGGAGATGGACACAGCTATAGTCCTAAAGC TATCCATTCGTGGCTGACCAGGGCCATGTACAGCCGCCGCTCCAAGATGAACCCCCTGTG GAACACCATGGTCATCGGAGGCTATGCTGATGGAGAGAGCTTCCTGGGTTACGTGGACAT GCTTGGTGTAGCCTATGAAGCCCCTTCGCTGGCCACTGGTTATGGTGCATACCTGGCTCA GCCTCTGTTGCGAGAAGTTCTGGAGAAGCAGCCAGTGCTGAGCCAGGCCGAGGCCCGAGA GCTAGTGGAACGCTGCATGCGAGTGCTGTACTATCGAGATGCCCGTTCTTATAACAGGTT TCAAATTGCCACTGTAACCGAAAAAGGTGTTGAAATAGAAGGACCCCTGTCTGCAGAGAC CAACTGGGATATTGCCCACATGATCAGTGGCTTTGAATGAAATATAGATAGATGCATTTT CCAGAACTGAAGTGGTACCCTTCTTCTAACTTTGAACGTGGCTGGTTCAGAGATACAGTT CTTTTGTAAAATAAATAAATCCTTTAAAACAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 806-903, - strand, RNAz p=0.871392 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 806-903, - strand, RNAz p=0.871392 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 166-373, gnl|bosTau2|chr3 (11679996-11679789) | |
| 166-373, gnl|Hg17|chr1 (148185530-148185737) | |
| 166-373, gnl|Mm7|chr3 (94760596-94760389) | |
| 600-718, gnl|bosTau2|chr3 (11678772-11678654) | |
| 600-718, gnl|canFam2|chr17 (63540752-63540915) | |
| 600-718, gnl|danRer3|chr19 (68683362-68683233) | |
| 600-718, gnl|dasNov1|scaffold_23544 (724-901) | |
| 600-718, gnl|echTel1|scaffold_279827 (2361-2526) | |
| 600-718, gnl|fr1|chrUn (258204379-258204527) | |
| 600-718, gnl|galGal2|chrUn (97081538-97081374) | |
| 600-718, gnl|hg17|chr1 (148186766-148186924) | |
| 600-718, gnl|Hg17|chr1 (148186786-148186904) | |
| 600-718, gnl|mm7|chr3 (94759003-94758848) | |
| 600-718, gnl|Mm7|chr3 (94758984-94758866) | |
| 600-718, gnl|monDom2|scaffold_44 (4604006-4604175) | |
| 600-718, gnl|oryCun1|scaffold_140433 (7727-7894) | |
| 600-718, gnl|panTro1|chr1 (129937246-129937404) | |
| 600-718, gnl|rheMac2|chr1 (129835340-129835497) | |
| 600-718, gnl|rn3|chr2 (189733210-189733059) | |
| 600-718, gnl|tetNig1|chrUn_random (10227110-10227238) | |
| 806-929, gnl|bosTau2|chr3 (11678172-11678053) | |
| 806-929, gnl|canFam2|chr17 (63541223-63541512) | |
| 806-929, gnl|dasNov1|scaffold_23544 (1194-1488) | |
| 806-929, gnl|echTel1|scaffold_279827 (2784-3096) | |
| 806-929, gnl|hg17|chr1 (148187207-148187498) | |
| 806-929, gnl|Hg17|chr1 (148187364-148187483) | |
| 806-929, gnl|mm7|chr3 (94758592-94758266) | |
| 806-929, gnl|Mm7|chr3 (94758391-94758277) | |
| 806-929, gnl|oryCun1|scaffold_140433 (8532-8806) | |
| 806-929, gnl|panTro1|chr1 (129937687-129937978) | |
| 806-929, gnl|rheMac2|chr1 (129835780-129836071) | |
| 806-929, gnl|rn3|chr2 (189732723-189732462) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-373, gnl|bosTau2|chr3 (11679996-11679789) | |
| 166-373, gnl|Hg17|chr1 (148185530-148185737) | |
| 166-373, gnl|Mm7|chr3 (94760596-94760389) | |
| 600-718, gnl|bosTau2|chr3 (11678772-11678654) | |
| 600-718, gnl|canFam2|chr17 (63540752-63540915) | |
| 600-718, gnl|danRer3|chr19 (68683362-68683233) | |
| 600-718, gnl|dasNov1|scaffold_23544 (724-901) | |
| 600-718, gnl|echTel1|scaffold_279827 (2361-2526) | |
| 600-718, gnl|fr1|chrUn (258204379-258204527) | |
| 600-718, gnl|galGal2|chrUn (97081538-97081374) | |
| 600-718, gnl|hg17|chr1 (148186766-148186924) | |
| 600-718, gnl|Hg17|chr1 (148186786-148186904) | |
| 600-718, gnl|mm7|chr3 (94759003-94758848) | |
| 600-718, gnl|Mm7|chr3 (94758984-94758866) | |
| 600-718, gnl|monDom2|scaffold_44 (4604006-4604175) | |
| 600-718, gnl|oryCun1|scaffold_140433 (7727-7894) | |
| 600-718, gnl|panTro1|chr1 (129937246-129937404) | |
| 600-718, gnl|rheMac2|chr1 (129835340-129835497) | |
| 600-718, gnl|rn3|chr2 (189733210-189733059) | |
| 600-718, gnl|tetNig1|chrUn_random (10227110-10227238) | |
| 806-929, gnl|bosTau2|chr3 (11678172-11678053) | |
| 806-929, gnl|canFam2|chr17 (63541223-63541512) | |
| 806-929, gnl|dasNov1|scaffold_23544 (1194-1488) | |
| 806-929, gnl|echTel1|scaffold_279827 (2784-3096) | |
| 806-929, gnl|hg17|chr1 (148187207-148187498) | |
| 806-929, gnl|Hg17|chr1 (148187364-148187483) | |
| 806-929, gnl|mm7|chr3 (94758592-94758266) | |
| 806-929, gnl|Mm7|chr3 (94758391-94758277) | |
| 806-929, gnl|oryCun1|scaffold_140433 (8532-8806) | |
| 806-929, gnl|panTro1|chr1 (129937687-129937978) | |
| 806-929, gnl|rheMac2|chr1 (129835780-129836071) | |
| 806-929, gnl|rn3|chr2 (189732723-189732462) |
| Expressed library(ies): 69 entry(ies) | More info |
| Expressed library(ies): 69 entry(ies) | Help | Less info |
| duo (1.03681) | |
| pgl (0.947867) | |
| sme (0.91631) | |
| ldo (0.873024) | |
| hea (0.817996) | |
| elu (0.770713) | |
| bla (0.746083) | |
| nep (0.7357) | |
| sto (0.719295) | |
| hlv (0.696282) | |
| cbl (0.688784) | |
| vin (0.665115) | |
| col (0.585023) | |
| spl (0.572738) | |
| jca (0.569801) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| ste (0.540833) | |
| pro (0.512033) | |
| sug (0.509165) | |
| fhi (0.508733) | |
| cly (0.482567) | |
| ece (0.45861) | |
| mas (0.42061) | |
| kid (0.389206) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| fty (0.351679) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| bfe (0.299715) | |
| eje (0.296501) | |
| cte (0.29274) | |
| lin (0.291206) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| che (0.272628) | |
| cov (0.264306) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) |
| Expressed library(ies): 69 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (1.03681) | |
| pgl (0.947867) | |
| sme (0.91631) | |
| ldo (0.873024) | |
| hea (0.817996) | |
| elu (0.770713) | |
| bla (0.746083) | |
| nep (0.7357) | |
| sto (0.719295) | |
| hlv (0.696282) | |
| cbl (0.688784) | |
| vin (0.665115) | |
| col (0.585023) | |
| spl (0.572738) | |
| jca (0.569801) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| ste (0.540833) | |
| pro (0.512033) | |
| sug (0.509165) | |
| fhi (0.508733) | |
| cly (0.482567) | |
| ece (0.45861) | |
| mas (0.42061) | |
| kid (0.389206) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| fty (0.351679) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| bfe (0.299715) | |
| eje (0.296501) | |
| cte (0.29274) | |
| lin (0.291206) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| che (0.272628) | |
| cov (0.264306) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) |