Ss1.1-Utr1-UTR01H020101.5
|
CTGTGGCTGTTTTGCTTTCTTGGCTGGAACTGGGGAAGTGGGGCAACCCCGCGCGGGGCG
ACACCGGGTTCCGGACCGACTGCACGGGCGGGGCTGGACTGACCTGAAAAAAAAAAAAAT
GTCTGGATTTCTAGAAGGCTTGAGATGCTCAGAATGCATTGATTGGGGAGAAAAGCGAAA
TACTATCGCTTCCATTGCCGCCGGTGTTCTATTTTTTACCGGCTGGTGGATTATCATAGA
TGCCGCTGTCATTTATCCCAGCATGGAAGAGTTCAACCACTCCTACCACGCCTGTGGTGT
TATAGCAACCATAGCCTTCCTAATGATTAATGCAGTATCGAATGGACAAGTCCGAGGTGA
TAGCTACAGTGAAGGTTGCCTGGGTCAAACAGGCGCTCGCATTTGGCTGTTCATTGGCTT
CATGTTGGCCTTTGGCTCTCTGATTGCATCAATGTGGATTCTCTTTGGAGGGTACGTTGC
TAAAGAAAAAACCACAGTATACCCTGGAATTGCTGTATTTTTCCAAAATGCCTTCATCTT
TTTTGGAGGACTGGTTTTTAAGTTTGGCCGCACCGAAGACTTATGGCAATGAAAACAGCT
GATTGATTACTGCACAGCAGCCCTGCATGGGTATTTTTTACTACTCACTCCCAGTCTTTT
GTAATGCCATTTTCTAAACTTATTTCTGAGTGTAGTCTCAACTTAAATTTGTATAATACA
AAATCATGAGAACTTCCTATTTAAACAACAAATTCTATTGTATGCATTTGATGAACTTGT
AAAAATGCTAAAGAAAAATACTTCACATGAGAAATTTTTATTACGTTTTATCATGGTATA
ATTTGTCAAAATAAAAATAAATCACGAAAGAAATTATGGAAGCATCTTATATGAGTATTT
GTCATGTCCAAGGTCCAAAATGCAATTAAAACTGCTCTGAAGATTTAATGTGTTTATTTA
AATGTGGCCTCTTCTGTGTCAAGTGCTAAATGAAATATAAACATTCTTGTTTTTAAAAGC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGTGGCTGTTTTGCTTTCTTGGCTGGAACTGGGGAAGTGGGGCAACCCCGCGCGGGGCG
ACACCGGGTTCCGGACCGACTGCACGGGCGGGGCTGGACTGACCTGAAAAAAAAAAAAAT
GTCTGGATTTCTAGAAGGCTTGAGATGCTCAGAATGCATTGATTGGGGAGAAAAGCGAAA
TACTATCGCTTCCATTGCCGCCGGTGTTCTATTTTTTACCGGCTGGTGGATTATCATAGA
TGCCGCTGTCATTTATCCCAGCATGGAAGAGTTCAACCACTCCTACCACGCCTGTGGTGT
TATAGCAACCATAGCCTTCCTAATGATTAATGCAGTATCGAATGGACAAGTCCGAGGTGA
TAGCTACAGTGAAGGTTGCCTGGGTCAAACAGGCGCTCGCATTTGGCTGTTCATTGGCTT
CATGTTGGCCTTTGGCTCTCTGATTGCATCAATGTGGATTCTCTTTGGAGGGTACGTTGC
TAAAGAAAAAACCACAGTATACCCTGGAATTGCTGTATTTTTCCAAAATGCCTTCATCTT
TTTTGGAGGACTGGTTTTTAAGTTTGGCCGCACCGAAGACTTATGGCAATGAAAACAGCT
GATTGATTACTGCACAGCAGCCCTGCATGGGTATTTTTTACTACTCACTCCCAGTCTTTT
GTAATGCCATTTTCTAAACTTATTTCTGAGTGTAGTCTCAACTTAAATTTGTATAATACA
AAATCATGAGAACTTCCTATTTAAACAACAAATTCTATTGTATGCATTTGATGAACTTGT
AAAAATGCTAAAGAAAAATACTTCACATGAGAAATTTTTATTACGTTTTATCATGGTATA
ATTTGTCAAAATAAAAATAAATCACGAAAGAAATTATGGAAGCATCTTATATGAGTATTT
GTCATGTCCAAGGTCCAAAATGCAATTAAAACTGCTCTGAAGATTTAATGTGTTTATTTA
AATGTGGCCTCTTCTGTGTCAAGTGCTAAATGAAATATAAACATTCTTGTTTTTAAAAGC |
|
gi|57043280|ref|XP_535354.1| |
Protein identifier
|
gi|57043280|ref|XP_535354.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
212-325, gnl|bosTau2|chr2 (80185674-80185787) |
|
212-325, gnl|canFam2|chr2 (77409274-77409107) |
|
212-325, gnl|danRer3|chr13 (40858058-40858213) |
|
212-325, gnl|echTel1|scaffold_257074 (14081-13961) |
|
212-325, gnl|fr1|chrUn (305709038-305708907) |
|
212-325, gnl|galGal2|chr23 (2020743-2020580) |
|
212-325, gnl|hg17|chr1 (25414727-25414886) |
|
212-325, gnl|Hg17|chr1 (25414768-25414881) |
|
212-325, gnl|loxAfr1|scaffold_2232 (91260-91428) |
|
212-325, gnl|mm7|chr4 (134288203-134288046) |
|
212-325, gnl|Mm7|chr4 (134288162-134288049) |
|
212-325, gnl|monDom2|scaffold_91 (2311770-2311894) |
|
212-325, gnl|oryCun1|scaffold_133813 (21809-21986) |
|
212-325, gnl|panTro1|chr1 (25957660-25957819) |
|
212-325, gnl|rheMac2|chr1 (27905693-27905852) |
|
212-325, gnl|rn3|chr5 (153695321-153695152) |
|
212-325, gnl|tetNig1|chr10 (3292688-3292813) |
|
212-325, gnl|xenTro1|scaffold_439 (698125-698278) |
| |
|
532-1003, gnl|bosTau2|chr2 (80196978-80197476) |
|
532-1003, gnl|Hg17|chr1 (25432451-25432915) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
212-325, gnl|bosTau2|chr2 (80185674-80185787) |
|
212-325, gnl|canFam2|chr2 (77409274-77409107) |
|
212-325, gnl|danRer3|chr13 (40858058-40858213) |
|
212-325, gnl|echTel1|scaffold_257074 (14081-13961) |
|
212-325, gnl|fr1|chrUn (305709038-305708907) |
|
212-325, gnl|galGal2|chr23 (2020743-2020580) |
|
212-325, gnl|hg17|chr1 (25414727-25414886) |
|
212-325, gnl|Hg17|chr1 (25414768-25414881) |
|
212-325, gnl|loxAfr1|scaffold_2232 (91260-91428) |
|
212-325, gnl|mm7|chr4 (134288203-134288046) |
|
212-325, gnl|Mm7|chr4 (134288162-134288049) |
|
212-325, gnl|monDom2|scaffold_91 (2311770-2311894) |
|
212-325, gnl|oryCun1|scaffold_133813 (21809-21986) |
|
212-325, gnl|panTro1|chr1 (25957660-25957819) |
|
212-325, gnl|rheMac2|chr1 (27905693-27905852) |
|
212-325, gnl|rn3|chr5 (153695321-153695152) |
|
212-325, gnl|tetNig1|chr10 (3292688-3292813) |
|
212-325, gnl|xenTro1|scaffold_439 (698125-698278) |
| |
|
532-1003, gnl|bosTau2|chr2 (80196978-80197476) |
|
532-1003, gnl|Hg17|chr1 (25432451-25432915) |
|
kid (0.778412) |
|
bla (0.746083) |
|
sug (0.636456) |
|
thg (0.633955) |
|
tbr (0.616713) |
|
ski (0.586941) |
|
spl (0.572738) |
|
cst (0.560146) |
|
duo (0.518403) |
|
mga (0.480615) |
|
clu (0.478583) |
|
spc (0.453463) |
|
eje (0.395335) |
|
sag (0.36543) |
|
fty (0.351679) |
|
rec (0.346141) |
|
cut (0.339847) |
|
fco (0.314416) |
|
fat (0.294855) |
|
liv (0.292569) |
|
csk (0.281492) |
|
cga (0.279096) |
|
hlv (0.278513) |
|
che (0.272628) |
|
ste (0.270416) |
|
ova (0.258264) |
|
tra (0.246184) |
|
cly (0.241284) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
hea (0.204499) |
|
aor (0.195274) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
lun (0.150489) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
kid (0.778412) |
|
bla (0.746083) |
|
sug (0.636456) |
|
thg (0.633955) |
|
tbr (0.616713) |
|
ski (0.586941) |
|
spl (0.572738) |
|
cst (0.560146) |
|
duo (0.518403) |
|
mga (0.480615) |
|
clu (0.478583) |
|
spc (0.453463) |
|
eje (0.395335) |
|
sag (0.36543) |
|
fty (0.351679) |
|
rec (0.346141) |
|
cut (0.339847) |
|
fco (0.314416) |
|
fat (0.294855) |
|
liv (0.292569) |
|
csk (0.281492) |
|
cga (0.279096) |
|
hlv (0.278513) |
|
che (0.272628) |
|
ste (0.270416) |
|
ova (0.258264) |
|
tra (0.246184) |
|
cly (0.241284) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
hea (0.204499) |
|
aor (0.195274) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
lun (0.150489) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
jej (0.0989218) |
