Non-Coding RNA Search

Ss1.1-Utr1-UTR01H050093.5

Sequence:


               
               CAGTGAAGCCGGCGGCCCTGGCACGTGATCTGGGACCGGCTCGGTCGCTTGGTGGCTGCG
TCTGTCTGTCCGTCCGCGGGTGCCATCATGGCGGACGCGGCCAGTCAGGTGCTCCTGGGC
TCCGGTCTCACCATCCTGTCCCAGCCGCTCATGTACGTGAAGGTGCTCATCCAGGTGGGA
TATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGGCAAGTATGTCAGCTT
CCTGGCCTCTTTTGTTATGCTCAGCACATCGCCAGCATCGATGGGAAGCGTGGATTGTTC
ACAGGCTTAACTCCAAGACTATGTTCAGGGGTCCTTGGAACTGTTGTCCATGGTAAAGTT
TTACAGCATTACCAGGAGTGTGACAAGGTTGAGGAGACGGGATCTGGAAATGTACAGAAA
GAAGTTTCCTCTTCCTTTGACCGAGTTATCAAGGAGACAACTCGAGAGATGATGGCTCGT
TCTGCTGCTACTCTCATCACACATCCCTTCCACGTGATCACTTTGAGATCTATGGTACAG
TTCATTGGCAGAGAGTCCAAGTACTGTGGACTTTGTGACTCCATAGTAACTATCTATCGG
GAAGAGGGCATCCTAGGATTTTTTGCGGGTCTTATTCCTCGCCTCCTAGGTGACATCATT
TCTTTGTGGCTCTGTAACTCACTGGCCTACCTCGTCAATACCTATGCACTGGACAGTGGG
GTTTCCACCATGAATGAAATGAAGAGTTATTCCCAAGCTGTCACAGGATTTTTTGCCAGT
ATGTTGACATATCCTTTTGTGCTTGTCTCTAACCTTATGGCTGTCAACAACTGTGGGCTT
GCTGGTGGATCCCCTCCTTATTCCCCAATATATACTTCTTGGATAGATTGCTGGTGCATG
CTACAAAAAGAGGGAAATATGAGCCGAGGAAATAGCTTGTTTTTCCGGAAGGTCCCCTTT
GGGAAGACTTATTGTTGTGACCTGAGAATGTTAATTTGAAGATGTGGGGCAGGGACAGTG
ACATTTCTATAGTCCCAGATGCACAGAATTATGGGAGAGAATGTTGATTTCTATACAGTG
TGGTGCGCTTTTTTAATAATCATTTAATCTTGGGAAAATGGAAAAAAATGTTGTCTGCCT
TTTTTGTTCTTTTTTTCCAGTACAACATAATTAACTACTGAGATTCCCCCTTTAACTATT
CTGAGATGGGACCTTTTTGCTCCAGACTATTTTACTTCAAGAAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGAAGCCGGCGGCCCTGGCACGTGATCTGGGACCGGCTCGGTCGCTTGGTGGCTGCG
TCTGTCTGTCCGTCCGCGGGTGCCATCATGGCGGACGCGGCCAGTCAGGTGCTCCTGGGC
TCCGGTCTCACCATCCTGTCCCAGCCGCTCATGTACGTGAAGGTGCTCATCCAGGTGGGA
TATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGGCAAGTATGTCAGCTT
CCTGGCCTCTTTTGTTATGCTCAGCACATCGCCAGCATCGATGGGAAGCGTGGATTGTTC
ACAGGCTTAACTCCAAGACTATGTTCAGGGGTCCTTGGAACTGTTGTCCATGGTAAAGTT
TTACAGCATTACCAGGAGTGTGACAAGGTTGAGGAGACGGGATCTGGAAATGTACAGAAA
GAAGTTTCCTCTTCCTTTGACCGAGTTATCAAGGAGACAACTCGAGAGATGATGGCTCGT
TCTGCTGCTACTCTCATCACACATCCCTTCCACGTGATCACTTTGAGATCTATGGTACAG
TTCATTGGCAGAGAGTCCAAGTACTGTGGACTTTGTGACTCCATAGTAACTATCTATCGG
GAAGAGGGCATCCTAGGATTTTTTGCGGGTCTTATTCCTCGCCTCCTAGGTGACATCATT
TCTTTGTGGCTCTGTAACTCACTGGCCTACCTCGTCAATACCTATGCACTGGACAGTGGG
GTTTCCACCATGAATGAAATGAAGAGTTATTCCCAAGCTGTCACAGGATTTTTTGCCAGT
ATGTTGACATATCCTTTTGTGCTTGTCTCTAACCTTATGGCTGTCAACAACTGTGGGCTT
GCTGGTGGATCCCCTCCTTATTCCCCAATATATACTTCTTGGATAGATTGCTGGTGCATG
CTACAAAAAGAGGGAAATATGAGCCGAGGAAATAGCTTGTTTTTCCGGAAGGTCCCCTTT
GGGAAGACTTATTGTTGTGACCTGAGAATGTTAATTTGAAGATGTGGGGCAGGGACAGTG
ACATTTCTATAGTCCCAGATGCACAGAATTATGGGAGAGAATGTTGATTTCTATACAGTG
TGGTGCGCTTTTTTAATAATCATTTAATCTTGGGAAAATGGAAAAAAATGTTGTCTGCCT
TTTTTGTTCTTTTTTTCCAGTACAACATAATTAACTACTGAGATTCCCCCTTTAACTATT
CTGAGATGGGACCTTTTTGCTCCAGACTATTTTACTTCAAGAAAAATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|58569834|gb|AAW79049.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58569834|gb|AAW79049.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               358-517, - strand, RNAz p=0.820838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-517, - strand, RNAz p=0.820838

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-625, gnl|bosTau2|chr10 (48173630-48174233)
               

               
               1-625, gnl|Hg17|chr12 (91426690-91427295)
               

               
               1-625, gnl|Mm7|chr5 (80835203-80834587)
               


               
               721-1128, gnl|bosTau2|chr10 (48174235-48174631)
               

               
               721-1128, gnl|Hg17|chr12 (91427297-91427681)
               

               
               721-1128, gnl|Mm7|chr5 (80834585-80834178)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-625, gnl|bosTau2|chr10 (48173630-48174233)
               

               
               1-625, gnl|Hg17|chr12 (91426690-91427295)
               

               
               1-625, gnl|Mm7|chr5 (80835203-80834587)
               


               
               721-1128, gnl|bosTau2|chr10 (48174235-48174631)
               

               
               721-1128, gnl|Hg17|chr12 (91427297-91427681)
               

               
               721-1128, gnl|Mm7|chr5 (80834585-80834178)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

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               nje (0.8296)
               

               
               hea (0.613497)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.8296)
               

               
               hea (0.613497)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-625, gnl\|bosTau2\|chr10 (48173630-48174233)
	1-625, gnl\|Hg17\|chr12 (91426690-91427295)
	1-625, gnl\|Mm7\|chr5 (80835203-80834587)

	721-1128, gnl\|bosTau2\|chr10 (48174235-48174631)
	721-1128, gnl\|Hg17\|chr12 (91427297-91427681)
	721-1128, gnl\|Mm7\|chr5 (80834585-80834178)

	nje (0.8296)
	hea (0.613497)
	tes (0.415628)
	ste (0.405625)
	elu (0.385356)
	nlu (0.383362)
	thg (0.380373)
	duo (0.345602)
	ecc (0.345105)
	tbr (0.308356)
	isp (0.300752)
	cte (0.29274)
	spl (0.286369)
	ssp (0.271039)
	ova (0.258264)
	ese (0.253004)
	fcc (0.197785)
	cmu (0.186393)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	cli (0.152812)
	lun (0.150489)
	ski (0.146735)
	hlv (0.139256)
	che (0.136314)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)