Ss1.1-Utr1-UTR01H050094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGCTGAGGAGGAGCCGCCGCCGCCGTCGCCGTCGCCGCCGCTGCCGCCACCGCTACCG AGGCCGAGCGGAGCCGTTAGCGCCGCGCCGCCGCCGCCCGCCCGACCCGGAGCAGCCCCG GGCCATCCCGCCCGCGTCCAGATCTTAAGAAAATACAATGTCTAATGGTTATGAAGACCA CATGGCCGAAGACTGCAGGGATGATATCGGGAGAACAAATTTGATTGTCAACTACCTCCC TCAGAACATGACCCAGGAGGAGTTACGAAGTCTGTTCAGCAGTATTGGTGAAATTGAATC TGCAAAACTTATTCGGGATAAAGTCGCAGGACACAGCTTGGGCTATGGCTTTGTGAACTA CGTGACTGCAAAGGACGCAGAGAGAGCAATAAACACGCTGAATGGCCTGCGGCTCCAGTC AAAGACCATTAAGGTGTCGTATGCTCGCCCAAGCTCAGAGGTCATCAAAGATGCCAACTT GTATATCAGCGGGCTTCCGAGGACCATGACCCAGAAGGACGTGGAGGACATGTTCTCTCC GTTTGGACGAATCATCAACTCCCGGGTCCTCGTGGATCAGACCACAGGTTTGTCCAGAGG GGTTGCGTTTATCCGGTTTGACAAACGGTCGGAAGCAGAAGAGGCAATTACCAGTTTCAA TGGTCATAAACCCCCAGGTTCCTCCGAGCCCATTACAGTGAAATTTGCAGCCAATCCCAA CCAGAACAAAAACGTGGCGCTGCTGTCCCAGCTGTACCACTCGCCAGCTAGACGGTTCGG AGGCCCCGTGCATCACCAGGCGCAGAGATTCAGGTTCTCCCCTATGGGTGTAGATCACAT GAGTGGGCTTTCTGGTGTCAATGTCCCAGGCAACGCTTCTTCGGGCTGGTGCATCTTCAT CTACAACCTGGGTCAAGATGCCGATGAGGGAATCCTCTGGCAGATGTTTGGCCCCTTTGG TGCCGTTACCAATGTGAAAGTGATTCGCGACTTCAACACCAACAAGTGCAAAGGCTTTGG TTTTGTGACCATGACAAACTATGAAGAAGCCTCGATGGCCATAGCAAGTCTGAACGGCTA CCGTCTGGGGGACAAAATCTTACAGGTTTCCTTCAAAACCAACAAGTCCCACAAATAACT CGCTCATGCTTTTTTTGTACGGAATAGATAATTAAGAGTGAAGAAGTTGAAACTTTTTTT GTTAGTGTACAACTCATTTTGCGCCAATTTTCACAAGTGTTTGTCTTAGTCTAAATGAGA AGTGAAAAGGTTTTTATACTCTGGGATGCAACCGACATGTTCAAATGTTTGAAATCCCAC AATGTTAGACCAATTTTAAGTTTCTTAAGTTATTTCCTTTAAAATATATATTAAACAGAA ATCTAAGTAGACTGCATTGACTAGCCAGTCCCTCGGGATGGTGGTGAAACTGAAGCATGC TTTAACTTCTGAGACTGTCTAACACGCGTTTCATTCGATGTTTCCACAAACTGGATAGAC ACAAACACACAAAAGAAATGACCTTTTTAGTTTTTAAACGAAAGATGTTAGACAGATGCT GAGTGTGTGTTTTTCTCAACCGCTTCAACATTTTAAGCGATTTCTGCTTTGGTTGACAGG AAATTGCTTTCCCAAGCAGGTCCCAATGCCACCTCCTGCTCACTCAGCCGAGGGGCCCTG GCAGTGGCAGTGGGTCCGTCTGCCGTGGGCCACCACCGGGGAGGGGGGCGGGGCCGCACG CCAGGCTGGGCCAGGCCCTGCAGAGGACACAAGCGGGTTTCGTTAAGCCCAGGCGCCAAT GGGAATGGACCAAAGAGTTTCAGGGAAACTCCAGTATATTCCAGAGTCAGACCTAAGCTC CAGGCACGCCTGAAGACGTATTGCTACTCTGACATCCCGAATTTCTGTCCACACATTGCA TGCACGGTGCCCCCACACGTCGGATACTGTTGTTCACAATCATTTCTCCAGTTTCCAAGA GCATTGAACACAGCTCGAATGCGTAAGATAGCTCTATTTTTTAATGACACAGAAACATTT GAGCATTGTATTTCTCGCATCCCTTCTCGTGAGCGCTAGACTTTTTTCTATTTTAGTCGG GTTTTGTTTTGAAAACTTTGCTTTCATATGAACACTCAGCAGAAAAGTACTTAACTTCCT GCCAGTTACCTATTAACAAAAAAAGAAAAAAAAAAAAAAAACCCTTTGATTTGTAGTTTT AAAGATTAACCCTCAAAGTTCTCTTCATAACTGCCTTGACATTTTGGGTTGTTCTGTTCT GTTAATTTTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGCTGAGGAGGAGCCGCCGCCGCCGTCGCCGTCGCCGCCGCTGCCGCCACCGCTACCG AGGCCGAGCGGAGCCGTTAGCGCCGCGCCGCCGCCGCCCGCCCGACCCGGAGCAGCCCCG GGCCATCCCGCCCGCGTCCAGATCTTAAGAAAATACAATGTCTAATGGTTATGAAGACCA CATGGCCGAAGACTGCAGGGATGATATCGGGAGAACAAATTTGATTGTCAACTACCTCCC TCAGAACATGACCCAGGAGGAGTTACGAAGTCTGTTCAGCAGTATTGGTGAAATTGAATC TGCAAAACTTATTCGGGATAAAGTCGCAGGACACAGCTTGGGCTATGGCTTTGTGAACTA CGTGACTGCAAAGGACGCAGAGAGAGCAATAAACACGCTGAATGGCCTGCGGCTCCAGTC AAAGACCATTAAGGTGTCGTATGCTCGCCCAAGCTCAGAGGTCATCAAAGATGCCAACTT GTATATCAGCGGGCTTCCGAGGACCATGACCCAGAAGGACGTGGAGGACATGTTCTCTCC GTTTGGACGAATCATCAACTCCCGGGTCCTCGTGGATCAGACCACAGGTTTGTCCAGAGG GGTTGCGTTTATCCGGTTTGACAAACGGTCGGAAGCAGAAGAGGCAATTACCAGTTTCAA TGGTCATAAACCCCCAGGTTCCTCCGAGCCCATTACAGTGAAATTTGCAGCCAATCCCAA CCAGAACAAAAACGTGGCGCTGCTGTCCCAGCTGTACCACTCGCCAGCTAGACGGTTCGG AGGCCCCGTGCATCACCAGGCGCAGAGATTCAGGTTCTCCCCTATGGGTGTAGATCACAT GAGTGGGCTTTCTGGTGTCAATGTCCCAGGCAACGCTTCTTCGGGCTGGTGCATCTTCAT CTACAACCTGGGTCAAGATGCCGATGAGGGAATCCTCTGGCAGATGTTTGGCCCCTTTGG TGCCGTTACCAATGTGAAAGTGATTCGCGACTTCAACACCAACAAGTGCAAAGGCTTTGG TTTTGTGACCATGACAAACTATGAAGAAGCCTCGATGGCCATAGCAAGTCTGAACGGCTA CCGTCTGGGGGACAAAATCTTACAGGTTTCCTTCAAAACCAACAAGTCCCACAAATAACT CGCTCATGCTTTTTTTGTACGGAATAGATAATTAAGAGTGAAGAAGTTGAAACTTTTTTT GTTAGTGTACAACTCATTTTGCGCCAATTTTCACAAGTGTTTGTCTTAGTCTAAATGAGA AGTGAAAAGGTTTTTATACTCTGGGATGCAACCGACATGTTCAAATGTTTGAAATCCCAC AATGTTAGACCAATTTTAAGTTTCTTAAGTTATTTCCTTTAAAATATATATTAAACAGAA ATCTAAGTAGACTGCATTGACTAGCCAGTCCCTCGGGATGGTGGTGAAACTGAAGCATGC TTTAACTTCTGAGACTGTCTAACACGCGTTTCATTCGATGTTTCCACAAACTGGATAGAC ACAAACACACAAAAGAAATGACCTTTTTAGTTTTTAAACGAAAGATGTTAGACAGATGCT GAGTGTGTGTTTTTCTCAACCGCTTCAACATTTTAAGCGATTTCTGCTTTGGTTGACAGG AAATTGCTTTCCCAAGCAGGTCCCAATGCCACCTCCTGCTCACTCAGCCGAGGGGCCCTG GCAGTGGCAGTGGGTCCGTCTGCCGTGGGCCACCACCGGGGAGGGGGGCGGGGCCGCACG CCAGGCTGGGCCAGGCCCTGCAGAGGACACAAGCGGGTTTCGTTAAGCCCAGGCGCCAAT GGGAATGGACCAAAGAGTTTCAGGGAAACTCCAGTATATTCCAGAGTCAGACCTAAGCTC CAGGCACGCCTGAAGACGTATTGCTACTCTGACATCCCGAATTTCTGTCCACACATTGCA TGCACGGTGCCCCCACACGTCGGATACTGTTGTTCACAATCATTTCTCCAGTTTCCAAGA GCATTGAACACAGCTCGAATGCGTAAGATAGCTCTATTTTTTAATGACACAGAAACATTT GAGCATTGTATTTCTCGCATCCCTTCTCGTGAGCGCTAGACTTTTTTCTATTTTAGTCGG GTTTTGTTTTGAAAACTTTGCTTTCATATGAACACTCAGCAGAAAAGTACTTAACTTCCT GCCAGTTACCTATTAACAAAAAAAGAAAAAAAAAAAAAAAACCCTTTGATTTGTAGTTTT AAAGATTAACCCTCAAAGTTCTCTTCATAACTGCCTTGACATTTTGGGTTGTTCTGTTCT GTTAATTTTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1051-1156, - strand, RNAz p=0.856766 | |
| 1446-1700, - strand, RNAz p=0.998184 | |
| 1818-1937, - strand, RNAz p=0.819612 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1051-1156, - strand, RNAz p=0.856766 | |
| 1446-1700, - strand, RNAz p=0.998184 | |
| 1818-1937, - strand, RNAz p=0.819612 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr7 (12668427-12668287) | |
| 1-141, gnl|Hg17|chr19 (7976522-7976379) | |
| 147-330, gnl|bosTau2|chr7 (12653935-12653752) | |
| 147-330, gnl|canFam2|chr20 (55678620-55678759) | |
| 147-330, gnl|danRer3|chr2 (35271725-35271587) | |
| 147-330, gnl|dasNov1|scaffold_25215 (18321-18460) | |
| 147-330, gnl|echTel1|scaffold_298299 (4312-4177) | |
| 147-330, gnl|fr1|chrUn (286395909-286396046) | |
| 147-330, gnl|galGal2|chr28 (864673-864811) | |
| 147-330, gnl|hg17|chr19 (7962525-7962664) | |
| 147-330, gnl|Hg17|chr19 (7962709-7962527) | |
| 147-330, gnl|loxAfr1|scaffold_6264 (37132-37019) | |
| 147-330, gnl|mm7|chr8 (4276165-4276304) | |
| 147-330, gnl|Mm7|chr8 (4276349-4276167) | |
| 147-330, gnl|monDom2|scaffold_136 (1597018-1596880) | |
| 147-330, gnl|oryCun1|scaffold_87604 (18492-18353) | |
| 147-330, gnl|panTro1|chr20 (8319199-8319338) | |
| 147-330, gnl|rheMac2|chr19 (7926522-7926383) | |
| 147-330, gnl|rn3|chr12 (1476559-1476420) | |
| 147-330, gnl|tetNig1|chr10 (8786606-8786469) | |
| 147-330, gnl|xenTro1|scaffold_680 (342924-342770) | |
| 431-589, gnl|bosTau2|chr7 (12971403-12971561) | |
| 431-589, gnl|canFam2|chr20 (55662206-55662369) | |
| 431-589, gnl|danRer3|chr2 (35272891-35272734) | |
| 431-589, gnl|dasNov1|scaffold_25215 (3245-3407) | |
| 431-589, gnl|echTel1|scaffold_282750 (4129-3967) | |
| 431-589, gnl|fr1|chrUn (286394680-286394827) | |
| 431-589, gnl|galGal2|chr28 (856522-856684) | |
| 431-589, gnl|hg17|chr19 (7944607-7944770) | |
| 431-589, gnl|Hg17|chr19 (7944765-7944607) | |
| 431-589, gnl|loxAfr1|scaffold_6264 (56488-56325) | |
| 431-589, gnl|mm7|chr8 (4266056-4266219) | |
| 431-589, gnl|Mm7|chr8 (4266214-4266056) | |
| 431-589, gnl|monDom2|scaffold_136 (1623513-1623350) | |
| 431-589, gnl|oryCun1|scaffold_34590 (4625-4787) | |
| 431-589, gnl|panTro1|chr20 (8300950-8301113) | |
| 431-589, gnl|rheMac2|chr19 (7945373-7945210) | |
| 431-589, gnl|rn3|chr12 (1487541-1487378) | |
| 431-589, gnl|tetNig1|chr10 (8787789-8787626) | |
| 431-589, gnl|xenTro1|scaffold_680 (345192-345029) | |
| 812-2289, gnl|bosTau2|chr7 (12978946-12980428) | |
| 812-2289, gnl|Hg17|chr19 (7934693-7933229) | |
| 812-2289, gnl|Mm7|chr8 (4254188-4252676) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr7 (12668427-12668287) | |
| 1-141, gnl|Hg17|chr19 (7976522-7976379) | |
| 147-330, gnl|bosTau2|chr7 (12653935-12653752) | |
| 147-330, gnl|canFam2|chr20 (55678620-55678759) | |
| 147-330, gnl|danRer3|chr2 (35271725-35271587) | |
| 147-330, gnl|dasNov1|scaffold_25215 (18321-18460) | |
| 147-330, gnl|echTel1|scaffold_298299 (4312-4177) | |
| 147-330, gnl|fr1|chrUn (286395909-286396046) | |
| 147-330, gnl|galGal2|chr28 (864673-864811) | |
| 147-330, gnl|hg17|chr19 (7962525-7962664) | |
| 147-330, gnl|Hg17|chr19 (7962709-7962527) | |
| 147-330, gnl|loxAfr1|scaffold_6264 (37132-37019) | |
| 147-330, gnl|mm7|chr8 (4276165-4276304) | |
| 147-330, gnl|Mm7|chr8 (4276349-4276167) | |
| 147-330, gnl|monDom2|scaffold_136 (1597018-1596880) | |
| 147-330, gnl|oryCun1|scaffold_87604 (18492-18353) | |
| 147-330, gnl|panTro1|chr20 (8319199-8319338) | |
| 147-330, gnl|rheMac2|chr19 (7926522-7926383) | |
| 147-330, gnl|rn3|chr12 (1476559-1476420) | |
| 147-330, gnl|tetNig1|chr10 (8786606-8786469) | |
| 147-330, gnl|xenTro1|scaffold_680 (342924-342770) | |
| 431-589, gnl|bosTau2|chr7 (12971403-12971561) | |
| 431-589, gnl|canFam2|chr20 (55662206-55662369) | |
| 431-589, gnl|danRer3|chr2 (35272891-35272734) | |
| 431-589, gnl|dasNov1|scaffold_25215 (3245-3407) | |
| 431-589, gnl|echTel1|scaffold_282750 (4129-3967) | |
| 431-589, gnl|fr1|chrUn (286394680-286394827) | |
| 431-589, gnl|galGal2|chr28 (856522-856684) | |
| 431-589, gnl|hg17|chr19 (7944607-7944770) | |
| 431-589, gnl|Hg17|chr19 (7944765-7944607) | |
| 431-589, gnl|loxAfr1|scaffold_6264 (56488-56325) | |
| 431-589, gnl|mm7|chr8 (4266056-4266219) | |
| 431-589, gnl|Mm7|chr8 (4266214-4266056) | |
| 431-589, gnl|monDom2|scaffold_136 (1623513-1623350) | |
| 431-589, gnl|oryCun1|scaffold_34590 (4625-4787) | |
| 431-589, gnl|panTro1|chr20 (8300950-8301113) | |
| 431-589, gnl|rheMac2|chr19 (7945373-7945210) | |
| 431-589, gnl|rn3|chr12 (1487541-1487378) | |
| 431-589, gnl|tetNig1|chr10 (8787789-8787626) | |
| 431-589, gnl|xenTro1|scaffold_680 (345192-345029) | |
| 812-2289, gnl|bosTau2|chr7 (12978946-12980428) | |
| 812-2289, gnl|Hg17|chr19 (7934693-7933229) | |
| 812-2289, gnl|Mm7|chr8 (4254188-4252676) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| cbl (1.26277) | |
| amn (0.417711) | |
| sug (0.381874) | |
| med (0.348756) | |
| rec (0.346141) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| bla (0.248694) | |
| cly (0.241284) | |
| clu (0.239292) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sto (0.179824) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cag (0.151194) | |
| liv (0.146284) | |
| lin (0.145603) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (1.26277) | |
| amn (0.417711) | |
| sug (0.381874) | |
| med (0.348756) | |
| rec (0.346141) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| bla (0.248694) | |
| cly (0.241284) | |
| clu (0.239292) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sto (0.179824) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cag (0.151194) | |
| liv (0.146284) | |
| lin (0.145603) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| spc (0.113366) |