Non-Coding RNA Search

Ss1.1-Utr1-UTR01H070095.5

Sequence:


               
               GCGCAAGGTGGTGACATGCTTGGTCTCGGAGTCTGCTGGGTTTGCCCTTGGTTTACTGGG
GGGGGGGGGGGCCGGTGCTGCTGGACCCCTTCTAAAGTGCAATGCAAAAGGGACGTCGTG
TATATGCAGCGTTTGTTGTTTTTTATTTTTATTTTTTGCTTTTGTTTTTCTTTGCAGTTA
TTAAATCTGTATGCATGGAATTTAAAACCTCTGCCAATCGTACATCCACCCATGGGCATT
AATCACCGTGTCGCGTAGAGGGTCAGTTGAGTCACGCAACACTCAGAACGCTGTGTTTAG
CCTTGTCTTTCCAGAGGTGTGTTTTTCAGTCATTTCTTCAAGGAAAACGAAATGATTGAG
CCGGAGCAAAGCTTTGAGTGTGTCAGTGTGTCTGTGCGGCTGTGCTGTTGCCAAGTCTGA
AAATCTAGTGAGCTCCTGGGCACCTGGGACCTCTGGCCCGCGGCCGCCTGGTTTGCTCCG
TTGACTTTCGAGTTCCCAGGCTCCGAGGGAGAGGCAGTTCTCCGGGGGGTGTGGGGGCAC
CGTCCCCTCCGGTCACCCGTCCGGTCCGTCTCGGCCGTCGAGTCCATGCCGCCACCGTCC
AGCTTTGTCCCCAGCCATCGGGAAGGGCTGGAGGCGCAGCAGGGTCTCGGGCCCCGGGAA
GGCCTTGGCCCACCCGGGCCACCCCGAGGGCCCCCGGGCGAGGCCAGGGCGTGGGGCTGG
CGGGCGGCAGGGCCCTGGGGCCCCGCGCTGCAGCTGCACCCGAGTTTCTCTGCGAAGGGA
GGAGACCTCTCGTAGGTGGTCGCCGCTCCCTGTGTGTGAGGCCCATCATCGAAATGATTG
TGTATTCAGTTTAATCACTCATTATTTCTCCGCCGAAAGAAGATGTTTAACGAAGGGAAA
AACCAACAACAGCAATAACATTCACGTCTCCGGAGCAGCTAACTCACTCACACGTCTTCT
GCTTTCCGTGCGGAACTAGCGATGTAAAAACCGACCGTGTAAATACGCCCCCTTTCCACC
CTGCGTCCTGCGTGTATGTGGTGGTTCCTTCTCCAGGACTCGCTTCTCACCGGGTAGCTC
GTCTCGTTTTCGGGGTTGTTTTTAGCTGAGGAAGAACAGCCCGCCCGCCCGCCCGGCTCG
GGAGGCGGCTTGTTCTTGCTTTAAGTCAGGAGTCAACAAAGAACCCTTTTTGTTCCATTA
AGGAAAAAACCACGGCTCTCCCCTCGCCCCGCCAGGAGCGTCTGCATCGCCGACCCCTTC
TCTCCTTTGCTGCTGCTAATGACGATATGACTTACTCTACTATTGGAAAACTATTTTTAT
GTAATTAATGTATGCTTTCTTGTTTATAAATGCCTGATTTAAAAAGAAAAAAGAAAAAGC
TTGGCATATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCAAGGTGGTGACATGCTTGGTCTCGGAGTCTGCTGGGTTTGCCCTTGGTTTACTGGG
GGGGGGGGGGGCCGGTGCTGCTGGACCCCTTCTAAAGTGCAATGCAAAAGGGACGTCGTG
TATATGCAGCGTTTGTTGTTTTTTATTTTTATTTTTTGCTTTTGTTTTTCTTTGCAGTTA
TTAAATCTGTATGCATGGAATTTAAAACCTCTGCCAATCGTACATCCACCCATGGGCATT
AATCACCGTGTCGCGTAGAGGGTCAGTTGAGTCACGCAACACTCAGAACGCTGTGTTTAG
CCTTGTCTTTCCAGAGGTGTGTTTTTCAGTCATTTCTTCAAGGAAAACGAAATGATTGAG
CCGGAGCAAAGCTTTGAGTGTGTCAGTGTGTCTGTGCGGCTGTGCTGTTGCCAAGTCTGA
AAATCTAGTGAGCTCCTGGGCACCTGGGACCTCTGGCCCGCGGCCGCCTGGTTTGCTCCG
TTGACTTTCGAGTTCCCAGGCTCCGAGGGAGAGGCAGTTCTCCGGGGGGTGTGGGGGCAC
CGTCCCCTCCGGTCACCCGTCCGGTCCGTCTCGGCCGTCGAGTCCATGCCGCCACCGTCC
AGCTTTGTCCCCAGCCATCGGGAAGGGCTGGAGGCGCAGCAGGGTCTCGGGCCCCGGGAA
GGCCTTGGCCCACCCGGGCCACCCCGAGGGCCCCCGGGCGAGGCCAGGGCGTGGGGCTGG
CGGGCGGCAGGGCCCTGGGGCCCCGCGCTGCAGCTGCACCCGAGTTTCTCTGCGAAGGGA
GGAGACCTCTCGTAGGTGGTCGCCGCTCCCTGTGTGTGAGGCCCATCATCGAAATGATTG
TGTATTCAGTTTAATCACTCATTATTTCTCCGCCGAAAGAAGATGTTTAACGAAGGGAAA
AACCAACAACAGCAATAACATTCACGTCTCCGGAGCAGCTAACTCACTCACACGTCTTCT
GCTTTCCGTGCGGAACTAGCGATGTAAAAACCGACCGTGTAAATACGCCCCCTTTCCACC
CTGCGTCCTGCGTGTATGTGGTGGTTCCTTCTCCAGGACTCGCTTCTCACCGGGTAGCTC
GTCTCGTTTTCGGGGTTGTTTTTAGCTGAGGAAGAACAGCCCGCCCGCCCGCCCGGCTCG
GGAGGCGGCTTGTTCTTGCTTTAAGTCAGGAGTCAACAAAGAACCCTTTTTGTTCCATTA
AGGAAAAAACCACGGCTCTCCCCTCGCCCCGCCAGGAGCGTCTGCATCGCCGACCCCTTC
TCTCCTTTGCTGCTGCTAATGACGATATGACTTACTCTACTATTGGAAAACTATTTTTAT
GTAATTAATGTATGCTTTCTTGTTTATAAATGCCTGATTTAAAAAGAAAAAAGAAAAAGC
TTGGCATATTTA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               38-241, gnl|bosTau2|chr16 (36622258-36622047)
               

               
               38-241, gnl|Hg17|chr1 (2271932-2272128)
               

               
               38-241, gnl|Mm7|chr4 (154145349-154145153)
               


               
               723-1128, gnl|bosTau2|chr12 (46136394-46135989)
               

               
               723-1128, gnl|Hg17|chr1 (2272707-2273174)
               

               
               723-1128, gnl|Mm7|chr4 (154144576-154144109)
               


               
               1132-1391, gnl|bosTau2|chr17 (42828997-42828727)
               

               
               1132-1391, gnl|Hg17|chr1 (2273486-2273737)
               

               
               1132-1391, gnl|Mm7|chr4 (154143974-154143710)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-241, gnl|bosTau2|chr16 (36622258-36622047)
               

               
               38-241, gnl|Hg17|chr1 (2271932-2272128)
               

               
               38-241, gnl|Mm7|chr4 (154145349-154145153)
               


               
               723-1128, gnl|bosTau2|chr12 (46136394-46135989)
               

               
               723-1128, gnl|Hg17|chr1 (2272707-2273174)
               

               
               723-1128, gnl|Mm7|chr4 (154144576-154144109)
               


               
               1132-1391, gnl|bosTau2|chr17 (42828997-42828727)
               

               
               1132-1391, gnl|Hg17|chr1 (2273486-2273737)
               

               
               1132-1391, gnl|Mm7|chr4 (154143974-154143710)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               eru (0.480192)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.480192)
               

               
               ece (0.45861)
               

               
               amn (0.417711)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	38-241, gnl\|bosTau2\|chr16 (36622258-36622047)
	38-241, gnl\|Hg17\|chr1 (2271932-2272128)
	38-241, gnl\|Mm7\|chr4 (154145349-154145153)

	723-1128, gnl\|bosTau2\|chr12 (46136394-46135989)
	723-1128, gnl\|Hg17\|chr1 (2272707-2273174)
	723-1128, gnl\|Mm7\|chr4 (154144576-154144109)

	1132-1391, gnl\|bosTau2\|chr17 (42828997-42828727)
	1132-1391, gnl\|Hg17\|chr1 (2273486-2273737)
	1132-1391, gnl\|Mm7\|chr4 (154143974-154143710)

	eru (0.480192)
	ece (0.45861)
	amn (0.417711)
	fli (0.405762)
	pla (0.401016)
	fcc (0.39557)
	elu (0.385356)
	ton (0.351)
	cga (0.279096)
	cly (0.241284)
	fty (0.17584)
	fbs (0.175346)
	mcp (0.170648)
	fat (0.147427)
	hyp (0.142837)
	cov (0.132153)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	cty (0.10408)