Non-Coding RNA Search

Ss1.1-Utr1-UTR01H120084.5

Sequence:


               
               ACGCAGGCACCTAAGTGGTAATCACTTAGTAGAAAAACTGAAGCCCTTGGAGCAGGGCTG
CCAGGGATGATAAAAGCAGGAGGCCCAGAGAGCCTACCGAAGTCTCCATCTCTGAGGGCG
TACAAAGGCGGAGAAAGCTGTTCATAAAATGGCTCTGGACATCCTCGCCGTGGCCCCTCT
CTACCAAGGCCCTGACATAAACAAAATCAGGCTGATGGCAGAGACGACCAAGAAGTCCAC
CACCCCGCCCAAACCCTTGACCCCCTCTAGGACCAAACTCACCACCATTGAGACCAAGAG
GATCATGTCCGTTCTGGATGAGACCATTCACAAGGTGGAGTTGGTGACCCTGCTGTCAAA
CGTGGCATCCAGTTCCCAGAGTCTGGAGGGGATGCTGGGGGAGGACATCATGAAGGCAGT
GAGGGAGCACGTGGACCTCTGCCAGACCCTCTTGGATCATGTCAATTACCTTCAGGAGGA
AGAGCAGCGATTGCAGGAGGAAGAAGGGTTCGAGGATGAGCCATGGTTCCGAGACCTTGT
CTTCTCCATAGAGCTCCAGAAATCCCGCCTCCCTCCGCTTAGGCAACAGATCAGAGAATC
CACCAAGAATGTCTTGAGGCTCCTGCTCAGGAACCCCCAGGCGGCCAGTCTCTTGCAGGT
GCAGTCCCTGGGCAGAAGTGAGGAAGCCCAGAGTTTTATTGACAGTCTGGTAGAACTCCG
AGGTTTCCTGTTTGAGAAGCTACTCACTAGTCCCATGGAAGCCAGAGACAAGACTCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCAGGCACCTAAGTGGTAATCACTTAGTAGAAAAACTGAAGCCCTTGGAGCAGGGCTG
CCAGGGATGATAAAAGCAGGAGGCCCAGAGAGCCTACCGAAGTCTCCATCTCTGAGGGCG
TACAAAGGCGGAGAAAGCTGTTCATAAAATGGCTCTGGACATCCTCGCCGTGGCCCCTCT
CTACCAAGGCCCTGACATAAACAAAATCAGGCTGATGGCAGAGACGACCAAGAAGTCCAC
CACCCCGCCCAAACCCTTGACCCCCTCTAGGACCAAACTCACCACCATTGAGACCAAGAG
GATCATGTCCGTTCTGGATGAGACCATTCACAAGGTGGAGTTGGTGACCCTGCTGTCAAA
CGTGGCATCCAGTTCCCAGAGTCTGGAGGGGATGCTGGGGGAGGACATCATGAAGGCAGT
GAGGGAGCACGTGGACCTCTGCCAGACCCTCTTGGATCATGTCAATTACCTTCAGGAGGA
AGAGCAGCGATTGCAGGAGGAAGAAGGGTTCGAGGATGAGCCATGGTTCCGAGACCTTGT
CTTCTCCATAGAGCTCCAGAAATCCCGCCTCCCTCCGCTTAGGCAACAGATCAGAGAATC
CACCAAGAATGTCTTGAGGCTCCTGCTCAGGAACCCCCAGGCGGCCAGTCTCTTGCAGGT
GCAGTCCCTGGGCAGAAGTGAGGAAGCCCAGAGTTTTATTGACAGTCTGGTAGAACTCCG
AGGTTTCCTGTTTGAGAAGCTACTCACTAGTCCCATGGAAGCCAGAGACAAGACTCAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61856978|ref|XP_590935.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856978|ref|XP_590935.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               612-731, + strand, RNAz p=0.986852

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               612-731, + strand, RNAz p=0.986852

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_138451, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_138451, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-780, gnl|bosTau2|chr17 (37817226-37817946)
               

               
               53-780, gnl|Hg17|chr12 (112108787-112108060)
               

               
               53-780, gnl|Mm7|chr5 (119834011-119834727)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-780, gnl|bosTau2|chr17 (37817226-37817946)
               

               
               53-780, gnl|Hg17|chr12 (112108787-112108060)
               

               
               53-780, gnl|Mm7|chr5 (119834011-119834727)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               cty (0.10408)

	53-780, gnl\|bosTau2\|chr17 (37817226-37817946)
	53-780, gnl\|Hg17\|chr12 (112108787-112108060)
	53-780, gnl\|Mm7\|chr5 (119834011-119834727)