Non-Coding RNA Search

Ss1.1-Utr2-C0001779_I16.5

Sequence:


               
               ACAAAGATGAGCAACAATGAACCAAGCATTCCTGCATGGCAATAATTGTCTAAAATCCAG
TAGACTGCCCATCACAGAGGGGTGCCCACCTCAGAGGCCACCACAATCTCCCAGCTCCCT
GTTTTCTGCACCAGCCCTGTTTTATGCAGTTACATAAGTTACTAGCCCTAATTGGCATGT
GATTTTGCTACCCTGCTGTCGTCATGTATCTGCTGTTGATTTTGAGGAGCTCACCATCCA
GCCATCCTCTTCTGAATATGCTTTAATTTCTAAGAGTTATTCTTATAATGGGAAGCATGC
AATAGAAGCATTTCTCCACATGTCCTTAGTATTAAAAGGCCCACATCAAACTGTTAGCTC
ATATTGAGCTTGGGAGCAATTAAAACCCCAGGTGTCCCTCACATGAATTATCTCATGAAG
TTGCCTGCCAAACATGGTGTGTTCTACCCTGCAATTTTTTTTTTTTTAATGTGAATATAT
AGCCCTGGCCTGAATTTTTCTCTCCTCATAGGGATTTGTGATTATCAAATACACCATAAT
ATGAAATCATCCAAAGCTTTGAAATAAAGCCCAAAAAGCACAAAATATTTTATCATTTTA
ATATACTTAGACTATATAATGACAAGGAGGGTGTCTGTGTCAGTAAACGCATTTTATGAT
TTTTATTTTTACATGTTTTGGGGCTTTTTAACTGCTTTAATTTATACCTTTTAAAGTATC
TTAAAACCAAAACAGTAATACCAATCAGATATTACTTTGCTGAAAGACACCTTGTAAGAA
ATGCACTTTAATCAGGAATGACCTGGAGTTCCCACTGTGGCATAGCAGGTTAAGAACCGG
CATTGTCTCTGTGGTGGCTAGGGTTTGATCCCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAGATGAGCAACAATGAACCAAGCATTCCTGCATGGCAATAATTGTCTAAAATCCAG
TAGACTGCCCATCACAGAGGGGTGCCCACCTCAGAGGCCACCACAATCTCCCAGCTCCCT
GTTTTCTGCACCAGCCCTGTTTTATGCAGTTACATAAGTTACTAGCCCTAATTGGCATGT
GATTTTGCTACCCTGCTGTCGTCATGTATCTGCTGTTGATTTTGAGGAGCTCACCATCCA
GCCATCCTCTTCTGAATATGCTTTAATTTCTAAGAGTTATTCTTATAATGGGAAGCATGC
AATAGAAGCATTTCTCCACATGTCCTTAGTATTAAAAGGCCCACATCAAACTGTTAGCTC
ATATTGAGCTTGGGAGCAATTAAAACCCCAGGTGTCCCTCACATGAATTATCTCATGAAG
TTGCCTGCCAAACATGGTGTGTTCTACCCTGCAATTTTTTTTTTTTTAATGTGAATATAT
AGCCCTGGCCTGAATTTTTCTCTCCTCATAGGGATTTGTGATTATCAAATACACCATAAT
ATGAAATCATCCAAAGCTTTGAAATAAAGCCCAAAAAGCACAAAATATTTTATCATTTTA
ATATACTTAGACTATATAATGACAAGGAGGGTGTCTGTGTCAGTAAACGCATTTTATGAT
TTTTATTTTTACATGTTTTGGGGCTTTTTAACTGCTTTAATTTATACCTTTTAAAGTATC
TTAAAACCAAAACAGTAATACCAATCAGATATTACTTTGCTGAAAGACACCTTGTAAGAA
ATGCACTTTAATCAGGAATGACCTGGAGTTCCCACTGTGGCATAGCAGGTTAAGAACCGG
CATTGTCTCTGTGGTGGCTAGGGTTTGATCCCTGGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-366, gnl|bosTau2|chr10 (49113251-49113610)
               

               
               1-366, gnl|Hg17|chr14 (62825717-62826066)
               

               
               1-366, gnl|Mm7|chr12 (73357347-73357679)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-366, gnl|bosTau2|chr10 (49113251-49113610)
               

               
               1-366, gnl|Hg17|chr14 (62825717-62826066)
               

               
               1-366, gnl|Mm7|chr12 (73357347-73357679)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               lyg (0.133103)

	1-366, gnl\|bosTau2\|chr10 (49113251-49113610)
	1-366, gnl\|Hg17\|chr14 (62825717-62826066)
	1-366, gnl\|Mm7\|chr12 (73357347-73357679)