Non-Coding RNA Search

Ss1.1-Utr2-C0001789_N18.5

Sequence:


               
               AGGAAACATTTTTTTCAAAAATGTCATCAGTTACCCAATGCATATTCTTTGGAACTGGAT
TCTTTTATAAAGGCATCTTGACATTGCAGGTGAGATGCTTTATTAGCTGAATGAGGGTAG
GCTTCCTTTTCATTTGGGGCTGATTACTTGCTATAGGCTTTTTTTTTCCTATTTGAAATT
GAATGGAATCTATTTAGAAGGTTACAAAATTATTTGCATCACAAGTAGATAGTTTCAATG
AACAGGATAGGGACATGCAGGAACAAATTTCAATTCGCACATATTTGTTTTTTTCTTTTT
CTTTTTTTTGACTAATTTGGTTATTTGCCATTTCTGGGGATTAAACTTTAAAAAATGTTC
TTCTTTTCTGTATCTGATGTTCTGTGTGCTATTAGTGATGCAGCCAACACGAACGGTTGT
CATGTGTAACACAACTTTCGATCACCGCGAAAACACCGTCCTGGGAAAGCGTCCATGCTT
GATATCGTTTGGTTCATGAACATTAAGTTTCCAGTACAGGTGACCCATAGCTCAAAGTGT
TAAATAATTGTCTACATTATTCAGTTTTTAAAATAATATTCCATTAATGAGATTGTTAGT
CTTTGAAGTTTTGCTCACTTTTATTTTTCCTAGTAGAGCAGGGTAAAAGGAAAGACTTAA
GTTCTTATTTATTTCTTTATACGGATCTGATAGATAGATTCATTTATTATTATAATTTTT
TAAGTGCAAGGGTAATTGTAAAATCATAGTGTAAAGTTTGGTGTTTCTGCTTTCTGTAAT
GTTTGGAACTTGCCTCTGCAGGTAAAATCCCAGAGGAAGCCAAAGCCCTCTCTCTATTGG
CTCCTGCTCCAACCATGACAGGTCTGATGCCCTGGTGCAGCTTGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAACATTTTTTTCAAAAATGTCATCAGTTACCCAATGCATATTCTTTGGAACTGGAT
TCTTTTATAAAGGCATCTTGACATTGCAGGTGAGATGCTTTATTAGCTGAATGAGGGTAG
GCTTCCTTTTCATTTGGGGCTGATTACTTGCTATAGGCTTTTTTTTTCCTATTTGAAATT
GAATGGAATCTATTTAGAAGGTTACAAAATTATTTGCATCACAAGTAGATAGTTTCAATG
AACAGGATAGGGACATGCAGGAACAAATTTCAATTCGCACATATTTGTTTTTTTCTTTTT
CTTTTTTTTGACTAATTTGGTTATTTGCCATTTCTGGGGATTAAACTTTAAAAAATGTTC
TTCTTTTCTGTATCTGATGTTCTGTGTGCTATTAGTGATGCAGCCAACACGAACGGTTGT
CATGTGTAACACAACTTTCGATCACCGCGAAAACACCGTCCTGGGAAAGCGTCCATGCTT
GATATCGTTTGGTTCATGAACATTAAGTTTCCAGTACAGGTGACCCATAGCTCAAAGTGT
TAAATAATTGTCTACATTATTCAGTTTTTAAAATAATATTCCATTAATGAGATTGTTAGT
CTTTGAAGTTTTGCTCACTTTTATTTTTCCTAGTAGAGCAGGGTAAAAGGAAAGACTTAA
GTTCTTATTTATTTCTTTATACGGATCTGATAGATAGATTCATTTATTATTATAATTTTT
TAAGTGCAAGGGTAATTGTAAAATCATAGTGTAAAGTTTGGTGTTTCTGCTTTCTGTAAT
GTTTGGAACTTGCCTCTGCAGGTAAAATCCCAGAGGAAGCCAAAGCCCTCTCTCTATTGG
CTCCTGCTCCAACCATGACAGGTCTGATGCCCTGGTGCAGCTTGCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               768-888, - strand, RNAz p=0.807777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               768-888, - strand, RNAz p=0.807777

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-888, gnl|bosTau2|chr20 (8318953-8318072)
               

               
               9-888, gnl|Hg17|chr5 (65490024-65490889)
               

               
               9-888, gnl|Mm7|chr13 (100902749-100901807)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-888, gnl|bosTau2|chr20 (8318953-8318072)
               

               
               9-888, gnl|Hg17|chr5 (65490024-65490889)
               

               
               9-888, gnl|Mm7|chr13 (100902749-100901807)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	9-888, gnl\|bosTau2\|chr20 (8318953-8318072)
	9-888, gnl\|Hg17\|chr5 (65490024-65490889)
	9-888, gnl\|Mm7\|chr13 (100902749-100901807)