Non-Coding RNA Search

Ss1.1-Utr2-C0001789_O15.5

Sequence:


               
               TCTTCAGTGAGACCACCTCTCCCGGGAATTCCCTGTGACCCTGGCTGCAGAAGCTGTGCC
ACCTGCTGGAATGGAGCTGGTGAGAGTAGCCATGCCTCTTCCTCCAGAAGGACTCTTCCA
TGCCACGTCAAGTTGGCACTCCCTTCAGACCCAGGCAGGGCCCTAAGAGGAGCACGTGAC
AGGTTTCCAAGTCCTTTCTCCAAATGCCCGTCTTGGCATCTTCTTGAATCCGAAGAAGAG
AGTCCCACGTCCTACCTAATCCACAGACCCAGAAGATCAGGCAGACTTGCTCCCGGCAGG
AGAGAACCCTGGGCTTGGTTTGGTACCTTGAATATTTATTACTAACCTCCATTCAGCAGC
AGCCGACAAAGAGACGCTTGGAGCAATCGGGATGGCAGGTGCTGCTCTGGCAAGCCTTGC
GTCGCTGCCCGAGTACATCCGTCTTCAAGAATCGGAAACGAGGCCAAGATGCCATCCCGA
TCTGTTTACCAGTGTGGATCTCGAAGCCAGAACGTTCCTCAGACAGAGCATCCGAGTCAG
GGAGAACGAGAGAGGGGGACCACTGGCTCTGCCCTCTTCCAGCTGCACGTCCCGGGCCCT
CGATGCCCTGTGGACAGGATGAGGACAGAGGAGGCAGGGACAGTGTCTGGAGACAGGCAG
CCGGCCAGCCCGTCCTCACCTNCAGGCGGACCCAGCATTTAAGTGCCCTTCCGATCTTGG
ACACACAACGTCTTCCTTCCTTATCTGTAGCAGCTCCTAGGTAGTAGCAGACTAGCACTT
CCCAGGACCTGTCCCCAAGGAACATGGGTGAGGGTTGCTACGTGACAGGTCGTGAGAGTC
CTGTTTGAGCAGTGTGAATCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCAGTGAGACCACCTCTCCCGGGAATTCCCTGTGACCCTGGCTGCAGAAGCTGTGCC
ACCTGCTGGAATGGAGCTGGTGAGAGTAGCCATGCCTCTTCCTCCAGAAGGACTCTTCCA
TGCCACGTCAAGTTGGCACTCCCTTCAGACCCAGGCAGGGCCCTAAGAGGAGCACGTGAC
AGGTTTCCAAGTCCTTTCTCCAAATGCCCGTCTTGGCATCTTCTTGAATCCGAAGAAGAG
AGTCCCACGTCCTACCTAATCCACAGACCCAGAAGATCAGGCAGACTTGCTCCCGGCAGG
AGAGAACCCTGGGCTTGGTTTGGTACCTTGAATATTTATTACTAACCTCCATTCAGCAGC
AGCCGACAAAGAGACGCTTGGAGCAATCGGGATGGCAGGTGCTGCTCTGGCAAGCCTTGC
GTCGCTGCCCGAGTACATCCGTCTTCAAGAATCGGAAACGAGGCCAAGATGCCATCCCGA
TCTGTTTACCAGTGTGGATCTCGAAGCCAGAACGTTCCTCAGACAGAGCATCCGAGTCAG
GGAGAACGAGAGAGGGGGACCACTGGCTCTGCCCTCTTCCAGCTGCACGTCCCGGGCCCT
CGATGCCCTGTGGACAGGATGAGGACAGAGGAGGCAGGGACAGTGTCTGGAGACAGGCAG
CCGGCCAGCCCGTCCTCACCTNCAGGCGGACCCAGCATTTAAGTGCCCTTCCGATCTTGG
ACACACAACGTCTTCCTTCCTTATCTGTAGCAGCTCCTAGGTAGTAGCAGACTAGCACTT
CCCAGGACCTGTCCCCAAGGAACATGGGTGAGGGTTGCTACGTGACAGGTCGTGAGAGTC
CTGTTTGAGCAGTGTGAATCACAA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-860, gnl|bosTau2|chr25 (28015390-28016268)
               

               
               1-860, gnl|canFam2|chr6 (9960930-9961666)
               

               
               1-860, gnl|dasNov1|scaffold_29894 (11655-12390)
               

               
               1-860, gnl|hg17|chr7 (74810341-74811091)
               

               
               1-860, gnl|Hg17|chr7 (74811167-74810347)
               

               
               1-860, gnl|mm7|chr5 (134380824-134381542)
               

               
               1-860, gnl|Mm7|chr5 (134381637-134380830)
               

               
               1-860, gnl|monDom2|scaffold_77 (5623821-5623058)
               

               
               1-860, gnl|rheMac2|chr3 (50754940-50754190)
               

               
               1-860, gnl|rn3|chr12 (22410076-22409365)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-860, gnl|bosTau2|chr25 (28015390-28016268)
               

               
               1-860, gnl|canFam2|chr6 (9960930-9961666)
               

               
               1-860, gnl|dasNov1|scaffold_29894 (11655-12390)
               

               
               1-860, gnl|hg17|chr7 (74810341-74811091)
               

               
               1-860, gnl|Hg17|chr7 (74811167-74810347)
               

               
               1-860, gnl|mm7|chr5 (134380824-134381542)
               

               
               1-860, gnl|Mm7|chr5 (134381637-134380830)
               

               
               1-860, gnl|monDom2|scaffold_77 (5623821-5623058)
               

               
               1-860, gnl|rheMac2|chr3 (50754940-50754190)
               

               
               1-860, gnl|rn3|chr12 (22410076-22409365)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cov (0.132153)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-860, gnl\|bosTau2\|chr25 (28015390-28016268)
	1-860, gnl\|canFam2\|chr6 (9960930-9961666)
	1-860, gnl\|dasNov1\|scaffold_29894 (11655-12390)
	1-860, gnl\|hg17\|chr7 (74810341-74811091)
	1-860, gnl\|Hg17\|chr7 (74811167-74810347)
	1-860, gnl\|mm7\|chr5 (134380824-134381542)
	1-860, gnl\|Mm7\|chr5 (134381637-134380830)
	1-860, gnl\|monDom2\|scaffold_77 (5623821-5623058)
	1-860, gnl\|rheMac2\|chr3 (50754940-50754190)
	1-860, gnl\|rn3\|chr12 (22410076-22409365)