Non-Coding RNA Search

Ss1.1-Utr2-C0001797_A03.5

Sequence:


               
               GCTGTAGTACATGATAAATTAGTTTTTGATTTCAAGATTTTGTCTAAGCCTCAGCGTAAA
GTTGAAGAAACCAAATGAGCTCTACCCTCACATTGCCTGCCCTAATATGGTCTCTTGTTT
AATCACTGGAATTCCTTTCATTTGGGCACTAATGCTATTTTCTCTCATCTAATTTGACAC
AGGAATGGTAGTGATATGGTTGTATTCAATGTTGATCACCTTTTTCTAAAGTGGGAGATG
ATACCTATACAGCTTGGCAAATGGGTAAAATATTGCGGCATCAATTATCTTTCAAATAGA
AAAGTTATCAGTTTTATACAATCACTTGGTGTGGTCTATGTCAAGAACCAGTAGACTTAT
TTTTCTTGAAGTCGGTTTGATTGTAACCCCTTATGGTTATCTCCAATTTGTCTTCCTGTA
AATGCAGATAGTTCAAAGCTAAGGGAAGAAAGTTTTCCTAAAACAGTACATTAGCCTTTA
AGGTTGTTAATAATTTAAGAACATTGTATATAGGTTAATCTTTATAAAGCACTAGAGTCT
TTGGTCAAAAGTTTAAAAAAAAGTATTAGAAATATTGAAATCATTGATAGTTCAGATAGT
CTCCTCAGCCTTTTTGAACTTCCACAACTTTTGGAATATTGCTATCGTAATCTTCTTATT
TAAAATGTGTTCAGGGGACTATAAAAGGTGAAAAAGCACAAAAAATTGGAGTACATAAAA
TTTCTGAACTATGCATTACTTGGTCTGGAAGTTTAAAATTTGGACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTAGTACATGATAAATTAGTTTTTGATTTCAAGATTTTGTCTAAGCCTCAGCGTAAA
GTTGAAGAAACCAAATGAGCTCTACCCTCACATTGCCTGCCCTAATATGGTCTCTTGTTT
AATCACTGGAATTCCTTTCATTTGGGCACTAATGCTATTTTCTCTCATCTAATTTGACAC
AGGAATGGTAGTGATATGGTTGTATTCAATGTTGATCACCTTTTTCTAAAGTGGGAGATG
ATACCTATACAGCTTGGCAAATGGGTAAAATATTGCGGCATCAATTATCTTTCAAATAGA
AAAGTTATCAGTTTTATACAATCACTTGGTGTGGTCTATGTCAAGAACCAGTAGACTTAT
TTTTCTTGAAGTCGGTTTGATTGTAACCCCTTATGGTTATCTCCAATTTGTCTTCCTGTA
AATGCAGATAGTTCAAAGCTAAGGGAAGAAAGTTTTCCTAAAACAGTACATTAGCCTTTA
AGGTTGTTAATAATTTAAGAACATTGTATATAGGTTAATCTTTATAAAGCACTAGAGTCT
TTGGTCAAAAGTTTAAAAAAAAGTATTAGAAATATTGAAATCATTGATAGTTCAGATAGT
CTCCTCAGCCTTTTTGAACTTCCACAACTTTTGGAATATTGCTATCGTAATCTTCTTATT
TAAAATGTGTTCAGGGGACTATAAAAGGTGAAAAAGCACAAAAAATTGGAGTACATAAAA
TTTCTGAACTATGCATTACTTGGTCTGGAAGTTTAAAATTTGGACTGA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               2-369, gnl|bosTau2|chr2 (79704269-79703895)
               

               
               2-369, gnl|canFam2|chr2 (76744125-76743520)
               

               
               2-369, gnl|dasNov1|scaffold_35897 (11285-11876)
               

               
               2-369, gnl|echTel1|scaffold_312676 (15208-15803)
               

               
               2-369, gnl|hg17|chr1 (26134101-26134703)
               

               
               2-369, gnl|Hg17|chr1 (26134136-26134493)
               

               
               2-369, gnl|loxAfr1|scaffold_4591 (47986-47299)
               

               
               2-369, gnl|mm7|chr4 (133655929-133655279)
               

               
               2-369, gnl|Mm7|chr4 (133655893-133655561)
               

               
               2-369, gnl|monDom2|scaffold_91 (3625041-3625646)
               

               
               2-369, gnl|oryCun1|scaffold_201504 (11437-12008)
               

               
               2-369, gnl|panTro1|chr1 (26821752-26822356)
               

               
               2-369, gnl|rheMac2|chr1 (28740909-28741513)
               

               
               2-369, gnl|rn3|chr5 (153033005-153032381)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-369, gnl|bosTau2|chr2 (79704269-79703895)
               

               
               2-369, gnl|canFam2|chr2 (76744125-76743520)
               

               
               2-369, gnl|dasNov1|scaffold_35897 (11285-11876)
               

               
               2-369, gnl|echTel1|scaffold_312676 (15208-15803)
               

               
               2-369, gnl|hg17|chr1 (26134101-26134703)
               

               
               2-369, gnl|Hg17|chr1 (26134136-26134493)
               

               
               2-369, gnl|loxAfr1|scaffold_4591 (47986-47299)
               

               
               2-369, gnl|mm7|chr4 (133655929-133655279)
               

               
               2-369, gnl|Mm7|chr4 (133655893-133655561)
               

               
               2-369, gnl|monDom2|scaffold_91 (3625041-3625646)
               

               
               2-369, gnl|oryCun1|scaffold_201504 (11437-12008)
               

               
               2-369, gnl|panTro1|chr1 (26821752-26822356)
               

               
               2-369, gnl|rheMac2|chr1 (28740909-28741513)
               

               
               2-369, gnl|rn3|chr5 (153033005-153032381)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	2-369, gnl\|bosTau2\|chr2 (79704269-79703895)
	2-369, gnl\|canFam2\|chr2 (76744125-76743520)
	2-369, gnl\|dasNov1\|scaffold_35897 (11285-11876)
	2-369, gnl\|echTel1\|scaffold_312676 (15208-15803)
	2-369, gnl\|hg17\|chr1 (26134101-26134703)
	2-369, gnl\|Hg17\|chr1 (26134136-26134493)
	2-369, gnl\|loxAfr1\|scaffold_4591 (47986-47299)
	2-369, gnl\|mm7\|chr4 (133655929-133655279)
	2-369, gnl\|Mm7\|chr4 (133655893-133655561)
	2-369, gnl\|monDom2\|scaffold_91 (3625041-3625646)
	2-369, gnl\|oryCun1\|scaffold_201504 (11437-12008)
	2-369, gnl\|panTro1\|chr1 (26821752-26822356)
	2-369, gnl\|rheMac2\|chr1 (28740909-28741513)
	2-369, gnl\|rn3\|chr5 (153033005-153032381)