Non-Coding RNA Search

Ss1.1-Utr2-C0001797_C04.5

Sequence:


               
               TCGGCACCAGGAAAACTTGAATGAATAGAATGCTCATTGATTAAAGTAGAATGAAGAACA
GCTGTCACTCTTAAACATTGTAAAGGAATATGTTTTTTTTTTTTTTCTGTAGAAAATTCC
ATAAATTCTTATATTTGTTCCAATCCCAATTTCCTGTCATTGATCAGGCACCATCATTGA
CTTTCAAATGACTTTTAGAAGTGGTAACTCTTAATTTCCTAATAGGTTTTAGACTATCCA
ATTTTGTTTTAATTAATTATTCTCTAGGTAAATATGTTTTAGGATTAAACACCTTTTGCA
GATACTGAAAGTGCCTCCTTTTGTGGTGTAAAAAACAAATTATGGTGCAAAAAGTAATCA
TTAGATTGAATTACATGAAGGTTTTTTGCTTTTTGACATAAAAATGTCAAGAGAAAGGCC
AAAGATTTGTACTTTTTCACTTATAAAGCACTCCTTTTTTCCTTAAACTTATTTCTGTCA
AATTAGATTTAACGAGAGAGTACTATTTTTAAGGAGCTATCTGTTTATGTAGAATGATTT
TGTTAAGAGTAATGTAAACTATTATTGAGTAGAGGCCTGGAGAGAAGTGGGCATTTTTGC
TGTTTAAAGGAATTACAAATGACCATTCTTAATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGCACCAGGAAAACTTGAATGAATAGAATGCTCATTGATTAAAGTAGAATGAAGAACA
GCTGTCACTCTTAAACATTGTAAAGGAATATGTTTTTTTTTTTTTTCTGTAGAAAATTCC
ATAAATTCTTATATTTGTTCCAATCCCAATTTCCTGTCATTGATCAGGCACCATCATTGA
CTTTCAAATGACTTTTAGAAGTGGTAACTCTTAATTTCCTAATAGGTTTTAGACTATCCA
ATTTTGTTTTAATTAATTATTCTCTAGGTAAATATGTTTTAGGATTAAACACCTTTTGCA
GATACTGAAAGTGCCTCCTTTTGTGGTGTAAAAAACAAATTATGGTGCAAAAAGTAATCA
TTAGATTGAATTACATGAAGGTTTTTTGCTTTTTGACATAAAAATGTCAAGAGAAAGGCC
AAAGATTTGTACTTTTTCACTTATAAAGCACTCCTTTTTTCCTTAAACTTATTTCTGTCA
AATTAGATTTAACGAGAGAGTACTATTTTTAAGGAGCTATCTGTTTATGTAGAATGATTT
TGTTAAGAGTAATGTAAACTATTATTGAGTAGAGGCCTGGAGAGAAGTGGGCATTTTTGC
TGTTTAAAGGAATTACAAATGACCATTCTTAATGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               322-472, - strand, RNAz p=0.98731
               

               
               376-484, - strand, RNAz p=0.993876

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-472, - strand, RNAz p=0.98731
               

               
               376-484, - strand, RNAz p=0.993876

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               9-636, gnl|bosTau2|chr1 (60321625-60320987)
               

               
               9-636, gnl|canFam2|chr34 (43579069-43579687)
               

               
               9-636, gnl|echTel1|scaffold_320572 (119957-120585)
               

               
               9-636, gnl|Hg17|chr3 (178223067-178222443)
               

               
               9-636, gnl|hg17|chr6 (128017888-128018484)
               

               
               9-636, gnl|loxAfr1|scaffold_51524 (4129-3517)
               

               
               9-636, gnl|mm7|chr3 (21953530-21952947)
               

               
               9-636, gnl|Mm7|chr3 (21952783-21953377)
               

               
               9-636, gnl|monDom2|scaffold_28 (30496591-30495937)
               

               
               9-636, gnl|oryCun1|scaffold_207483 (81750-81149)
               

               
               9-636, gnl|panTro1|chr5_random (7004239-7003643)
               

               
               9-636, gnl|rheMac2|chr4 (136233476-136232878)
               

               
               9-636, gnl|rn3|chr2 (107631508-107630923)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-636, gnl|bosTau2|chr1 (60321625-60320987)
               

               
               9-636, gnl|canFam2|chr34 (43579069-43579687)
               

               
               9-636, gnl|echTel1|scaffold_320572 (119957-120585)
               

               
               9-636, gnl|Hg17|chr3 (178223067-178222443)
               

               
               9-636, gnl|hg17|chr6 (128017888-128018484)
               

               
               9-636, gnl|loxAfr1|scaffold_51524 (4129-3517)
               

               
               9-636, gnl|mm7|chr3 (21953530-21952947)
               

               
               9-636, gnl|Mm7|chr3 (21952783-21953377)
               

               
               9-636, gnl|monDom2|scaffold_28 (30496591-30495937)
               

               
               9-636, gnl|oryCun1|scaffold_207483 (81750-81149)
               

               
               9-636, gnl|panTro1|chr5_random (7004239-7003643)
               

               
               9-636, gnl|rheMac2|chr4 (136233476-136232878)
               

               
               9-636, gnl|rn3|chr2 (107631508-107630923)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               cbl (0.114797)

	322-472, - strand, RNAz p=0.98731
	376-484, - strand, RNAz p=0.993876

	9-636, gnl\|bosTau2\|chr1 (60321625-60320987)
	9-636, gnl\|canFam2\|chr34 (43579069-43579687)
	9-636, gnl\|echTel1\|scaffold_320572 (119957-120585)
	9-636, gnl\|Hg17\|chr3 (178223067-178222443)
	9-636, gnl\|hg17\|chr6 (128017888-128018484)
	9-636, gnl\|loxAfr1\|scaffold_51524 (4129-3517)
	9-636, gnl\|mm7\|chr3 (21953530-21952947)
	9-636, gnl\|Mm7\|chr3 (21952783-21953377)
	9-636, gnl\|monDom2\|scaffold_28 (30496591-30495937)
	9-636, gnl\|oryCun1\|scaffold_207483 (81750-81149)
	9-636, gnl\|panTro1\|chr5_random (7004239-7003643)
	9-636, gnl\|rheMac2\|chr4 (136233476-136232878)
	9-636, gnl\|rn3\|chr2 (107631508-107630923)