Non-Coding RNA Search

Ss1.1-Utr2-C0001798_I16.5

Sequence:


               
               TATGCCACGGTATTTCCTTGATAACCACATTCAGTGAATGTTTAGCTTTTTTTAAATGCA
TTGATTCTAGGGAAAATATTTTACTCTTTGCAGATGCTAGCCCTAGCAGTTGCTCATAAT
TAGATCCTGTGAAATTAAGTATTAGTGAATACTGTTTATATGAAATAATCCTCAAGCTTA
AAAGAATCAAGTGAACAAATTGTTTTGTTTACAGGGGAGGAGGTGGTGAGGGAAAGGTTT
GAAATATTCAGGTGAGTAGGATTCCTACAGCTGCATAGTGAAATTTATAAGGTCTGGTAA
GTTTCTGCAGCTGAAGGACTTCTGCATTAACCTCTTTAAAATGTTCTGGAATCTTTAAAG
AAAGGGTGATTGTCTCTTGGGAAGGAAATCTGGTGGATGGGTTCTTTTTGGAGGGGGAGG
AGGGCTTCTCATACCATTTTTAATACTTTTTGAATGTGAATGCATTGCTTTTAAGGAAAA
AAAAGTGTTTCAAAGTAATAGGTAAACTGGTTTTTAATACACTATCTTGAGTAATTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCCACGGTATTTCCTTGATAACCACATTCAGTGAATGTTTAGCTTTTTTTAAATGCA
TTGATTCTAGGGAAAATATTTTACTCTTTGCAGATGCTAGCCCTAGCAGTTGCTCATAAT
TAGATCCTGTGAAATTAAGTATTAGTGAATACTGTTTATATGAAATAATCCTCAAGCTTA
AAAGAATCAAGTGAACAAATTGTTTTGTTTACAGGGGAGGAGGTGGTGAGGGAAAGGTTT
GAAATATTCAGGTGAGTAGGATTCCTACAGCTGCATAGTGAAATTTATAAGGTCTGGTAA
GTTTCTGCAGCTGAAGGACTTCTGCATTAACCTCTTTAAAATGTTCTGGAATCTTTAAAG
AAAGGGTGATTGTCTCTTGGGAAGGAAATCTGGTGGATGGGTTCTTTTTGGAGGGGGAGG
AGGGCTTCTCATACCATTTTTAATACTTTTTGAATGTGAATGCATTGCTTTTAAGGAAAA
AAAAGTGTTTCAAAGTAATAGGTAAACTGGTTTTTAATACACTATCTTGAGTAATTTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-355, + strand, RNAz p=0.98401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-355, + strand, RNAz p=0.98401

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               259-343, + strand, RNAmicro p=0.999999
               

               
               252-388, - strand, RNAmicro p=0.944011

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               259-343, + strand, RNAmicro p=0.999999
               

               
               252-388, - strand, RNAmicro p=0.944011

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               239-337, DA814067 PEBLM2 Homo sapiens cDNA clone PEBLM2001190 5', mRNA 
(dbj|DA814067.1|), blast E-value=6e-34, identity=95% 
               

               
               239-337, DB155335 THYMU3 Homo sapiens cDNA clone THYMU3033620 5', mRNA 
(dbj|DB155335.1|), blast E-value=6e-34, identity=95% 
               

               
               239-345, 65008 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW485315.1|), 
blast E-value=2.8026e-45, identity=97.2% 
               

               
               239-337, 7i44h02.x1 NCI_CGAP_Br16 Homo sapiens cDNA clone IMAGE 
(gb|BF001117.1|), blast E-value=6e-34, identity=95%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               239-337, DA814067 PEBLM2 Homo sapiens cDNA clone PEBLM2001190 5', mRNA 
(dbj|DA814067.1|), blast E-value=6e-34, identity=95% 
               

               
               239-337, DB155335 THYMU3 Homo sapiens cDNA clone THYMU3033620 5', mRNA 
(dbj|DB155335.1|), blast E-value=6e-34, identity=95% 
               

               
               239-345, 65008 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW485315.1|), 
blast E-value=2.8026e-45, identity=97.2% 
               

               
               239-337, 7i44h02.x1 NCI_CGAP_Br16 Homo sapiens cDNA clone IMAGE 
(gb|BF001117.1|), blast E-value=6e-34, identity=95%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-540, gnl|bosTau2|chr28 (16951103-16950573)
               

               
               9-540, gnl|Hg17|chr10 (69765736-69766273)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-540, gnl|bosTau2|chr28 (16951103-16950573)
               

               
               9-540, gnl|Hg17|chr10 (69765736-69766273)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               bla (0.124347)

	259-343, + strand, RNAmicro p=0.999999
	252-388, - strand, RNAmicro p=0.944011

	239-337, DA814067 PEBLM2 Homo sapiens cDNA clone PEBLM2001190 5', mRNA (dbj\|DA814067.1\|), blast E-value=6e-34, identity=95%
	239-337, DB155335 THYMU3 Homo sapiens cDNA clone THYMU3033620 5', mRNA (dbj\|DB155335.1\|), blast E-value=6e-34, identity=95%
	239-345, 65008 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW485315.1\|), blast E-value=2.8026e-45, identity=97.2%
	239-337, 7i44h02.x1 NCI_CGAP_Br16 Homo sapiens cDNA clone IMAGE (gb\|BF001117.1\|), blast E-value=6e-34, identity=95%

	9-540, gnl\|bosTau2\|chr28 (16951103-16950573)
	9-540, gnl\|Hg17\|chr10 (69765736-69766273)