Non-Coding RNA Search

Ss1.1-Utr2-C0001798_K16.5.5

Sequence:


               
               AGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGTGGCCCTC
TCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCTGTCCGAGAAAGCCTCAGG
GAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAACATGATCCAGAATCTC
CTGAGCAAGAATTCTTCCCATGTCCAGAAATTCTCTTATCAGCCGCTGAGGAACTACCTG
GATATGGTCTACGTGGGCAACATCAGCATCGGCACACCCCCGCAGCAGTTCAGCGTCGTC
TTTGACACCGGCTCATCAGACCTCTGGGTGCCCTCCATCTACTGCAAAAGCAAGGCCTGT
GTTACACACAGGTCCTTCAACCCTTCCCACTCCAGCACCTTCCATGACCGGGGCAAATCC
ATCAAGTTGGAATACGGCTCTGGGAAGATGTCAGGATTTCTTGGCCAAGACACCGTTCGG
ATCGGCCAACTCACAAGCACGGGCCAGGCATTTGGCCTGAGCAAGGAGGAGACCGGTAAG
GCCTTTGAACATGCCATCTTCGATGGCATCCTGGGCCTGGCCTATCCCAGCATCGCCATC
AAAGGGACCACCACCGTCATTGATAACCTAAAGAAGCAAGACCAAATTTCTGAGCCTGTC
TTTGCCTTCTACCTGAGCAGCGACAAAGAGGAGGGCAGCGTGGTGATGTTTGGTGGCGTG
GACAAGAAATACTACAAAGGAGACCTCAAGTGGGTGCCCCTGACACAAACTAGCTACTGG
CAGATCGCCTTGGACAGGATCACATGCAGAGGGAGAGTCATTGGTTGTCCCCGCGGCTGC
CAGGCCATCGTGGATACCGGGACGTCGATGCTGCATGGCCCAAGTAAAGCGGTGGCCAAA
ATCCATTCTCTCATCAATGCCAAGCACTTTGAGAAGGAGTATGTCGTCCCGTGTAATGCC
AGGAAGGCCTTGCCAGACATCGTCTTCACCATTAACAATGTCGACTACCCAGTGCCAGCT
CAAGCCTACATCCGAAAGAATGCTAATAATAACCGCTGCTACAGCACCTTTGAGGATATC
ATGGATACCTTGAACCAGAGGGAGATTTGGATCCTGGGTGATGTCTTCTTAAGGCTGTAC
TTCACTGTTTATGATGAAGGACAGAACAGGATTGGCCTGGCTCAGGCCACATAAATGCTG
GGGCTGCTTCAAGCAACATCCAGGCCAACCCCTCCAAACACACATTCCCTCACACCCAGG
GCATTCTCGCCCAGGGAGGGCAGCTTGAACGGGGTTCGGTGCTCTGAAAAGCCCTGTTCT
CAGTAAAGAATAAAGGATTGCCTTTGCAATGGTGCTACTACCCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTGGTGGCCCTC
TCAGACTGCTTAGTCATGATCCCTCTCACGAAGGTCAAGTCTGTCCGAGAAAGCCTCAGG
GAAAAAGGCTTGCTGAAAAATTTCCTCAAGGAACATCCTTACAACATGATCCAGAATCTC
CTGAGCAAGAATTCTTCCCATGTCCAGAAATTCTCTTATCAGCCGCTGAGGAACTACCTG
GATATGGTCTACGTGGGCAACATCAGCATCGGCACACCCCCGCAGCAGTTCAGCGTCGTC
TTTGACACCGGCTCATCAGACCTCTGGGTGCCCTCCATCTACTGCAAAAGCAAGGCCTGT
GTTACACACAGGTCCTTCAACCCTTCCCACTCCAGCACCTTCCATGACCGGGGCAAATCC
ATCAAGTTGGAATACGGCTCTGGGAAGATGTCAGGATTTCTTGGCCAAGACACCGTTCGG
ATCGGCCAACTCACAAGCACGGGCCAGGCATTTGGCCTGAGCAAGGAGGAGACCGGTAAG
GCCTTTGAACATGCCATCTTCGATGGCATCCTGGGCCTGGCCTATCCCAGCATCGCCATC
AAAGGGACCACCACCGTCATTGATAACCTAAAGAAGCAAGACCAAATTTCTGAGCCTGTC
TTTGCCTTCTACCTGAGCAGCGACAAAGAGGAGGGCAGCGTGGTGATGTTTGGTGGCGTG
GACAAGAAATACTACAAAGGAGACCTCAAGTGGGTGCCCCTGACACAAACTAGCTACTGG
CAGATCGCCTTGGACAGGATCACATGCAGAGGGAGAGTCATTGGTTGTCCCCGCGGCTGC
CAGGCCATCGTGGATACCGGGACGTCGATGCTGCATGGCCCAAGTAAAGCGGTGGCCAAA
ATCCATTCTCTCATCAATGCCAAGCACTTTGAGAAGGAGTATGTCGTCCCGTGTAATGCC
AGGAAGGCCTTGCCAGACATCGTCTTCACCATTAACAATGTCGACTACCCAGTGCCAGCT
CAAGCCTACATCCGAAAGAATGCTAATAATAACCGCTGCTACAGCACCTTTGAGGATATC
ATGGATACCTTGAACCAGAGGGAGATTTGGATCCTGGGTGATGTCTTCTTAAGGCTGTAC
TTCACTGTTTATGATGAAGGACAGAACAGGATTGGCCTGGCTCAGGCCACATAAATGCTG
GGGCTGCTTCAAGCAACATCCAGGCCAACCCCTCCAAACACACATTCCCTCACACCCAGG
GCATTCTCGCCCAGGGAGGGCAGCTTGAACGGGGTTCGGTGCTCTGAAAAGCCCTGTTCT
CAGTAAAGAATAAAGGATTGCCTTTGCAATGGTGCTACTACCCTCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8896138|gb|AAF81254.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8896138|gb|AAF81254.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               478-596, - strand, RNAz p=0.515866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-596, - strand, RNAz p=0.515866

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               234-406, gnl|bosTau2|chr29 (27936005-27935833)
               

               
               234-406, gnl|Hg17|chr11 (60730548-60730714)
               

               
               234-406, gnl|Mm7|chr19 (10355293-10355132)
               


               
               237-345, gnl|bosTau2|chr29 (31206485-31206377)
               

               
               237-345, gnl|Hg17|chr11 (60730555-60730659)
               

               
               237-345, gnl|Mm7|chr19 (10355293-10355185)
               


               
               478-680, gnl|bosTau2|chr7 (31245273-31245071)
               

               
               478-680, gnl|Hg17|chr11 (60769991-60770193)
               

               
               478-680, gnl|Mm7|chr19 (10353965-10353763)
               


               
               504-678, gnl|bosTau2|chr29 (30738120-30738294)
               

               
               504-678, gnl|Hg17|chr11 (60732362-60732536)
               

               
               504-678, gnl|Mm7|chr19 (10353939-10353765)
               


               
               1101-1361, gnl|bosTau2|chr29 (30744200-30744450)
               

               
               1101-1361, gnl|Mm7|chr19 (10349327-10349074)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               234-406, gnl|bosTau2|chr29 (27936005-27935833)
               

               
               234-406, gnl|Hg17|chr11 (60730548-60730714)
               

               
               234-406, gnl|Mm7|chr19 (10355293-10355132)
               


               
               237-345, gnl|bosTau2|chr29 (31206485-31206377)
               

               
               237-345, gnl|Hg17|chr11 (60730555-60730659)
               

               
               237-345, gnl|Mm7|chr19 (10355293-10355185)
               


               
               478-680, gnl|bosTau2|chr7 (31245273-31245071)
               

               
               478-680, gnl|Hg17|chr11 (60769991-60770193)
               

               
               478-680, gnl|Mm7|chr19 (10353965-10353763)
               


               
               504-678, gnl|bosTau2|chr29 (30738120-30738294)
               

               
               504-678, gnl|Hg17|chr11 (60732362-60732536)
               

               
               504-678, gnl|Mm7|chr19 (10353939-10353765)
               


               
               1101-1361, gnl|bosTau2|chr29 (30744200-30744450)
               

               
               1101-1361, gnl|Mm7|chr19 (10349327-10349074)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.265569)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)

	234-406, gnl\|bosTau2\|chr29 (27936005-27935833)
	234-406, gnl\|Hg17\|chr11 (60730548-60730714)
	234-406, gnl\|Mm7\|chr19 (10355293-10355132)

	237-345, gnl\|bosTau2\|chr29 (31206485-31206377)
	237-345, gnl\|Hg17\|chr11 (60730555-60730659)
	237-345, gnl\|Mm7\|chr19 (10355293-10355185)

	478-680, gnl\|bosTau2\|chr7 (31245273-31245071)
	478-680, gnl\|Hg17\|chr11 (60769991-60770193)
	478-680, gnl\|Mm7\|chr19 (10353965-10353763)

	504-678, gnl\|bosTau2\|chr29 (30738120-30738294)
	504-678, gnl\|Hg17\|chr11 (60732362-60732536)
	504-678, gnl\|Mm7\|chr19 (10353939-10353765)

	1101-1361, gnl\|bosTau2\|chr29 (30744200-30744450)
	1101-1361, gnl\|Mm7\|chr19 (10349327-10349074)