Ss1.1-Utr2-C0001799_D09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGCTTCTGATTTGTCGGCTGACACAGGATCGGTCTTTCTTCAAGAAGTCAGGGTTGCTT TTAGATTTCATTATGTCGTATCCGGCCACGGGCGTGTTTTCCGGGGGCTTCTCACCCAGC GCTTCGGTCGCGGCCTTCAGCTGCTCCTTCAACCTGCCGATGTCACAGTCAGCCTTCGCC CTCACGATGCTCAGCTCCGTGTAGATGTCTTTGTACTTGTCACTGGCGTACTTCTTGTCC CGCAATGCCGTCTGCAGCTCGTCCTTGAGGGAGCTGATCTCCTGCTTTAGGTACTGAATT TCTGATTCCTTCACCCGCAACAACACCTCTAACTCGTAGGCGTCCTTGCCCTGCGCGAGA GGCGAGCCGGCGGCCTCGCCACTGGTGTCCCCAGTCAGCAGTGTCCGCAGCCGTGAGATC TCTGCAGCCAGGCGGTTGTTCAGCTCCTGGTTGTGGGCGTTGAGCTCCTGGTTCTCGCGC TGGCACTGCCGCAGGGCCTGCCGCTCGGCCTCCAGCGCCTGGGCCAGGTGGGCGTTCTCC AGGCACTTCTGCGAGTACTGCTCAGACAGCACCTCCAGCTCCCGCTGCACCGACTGCAGC TCCTCCAGGTATTGCCGCCGCAGGGCCTCGATGTCAGAGTTGACGCTGCTGATCTGGGAG CGCTGGCTCTTCTCCAGCTCCCGCTCCATCTCCTCGCGGTGCGCGTTCTTCATGGCTTCG ATGGCTGAGATGGTGGCCGCCGTCTCCTCCGCCAGCAGGCGGTCTTTCTCCTCCCGCAGC TTCTCCAGTTCCCGCTGGTGCTGCCTCTGAAGGTCCTCGATCTTCTTCTGATGTGTCTCT TCCATGGCGGCAAACCCGCGCTCACACGTGGCCTGCAGCACGTAGCCCTCCCGGGCGCTC TGCTCCCGGCCCAGAGCCACCCTCAGCTGGTCCTGCAGCAGCCGGTTCTGCTCCAGAAGG TCCGAGGCCTCCTTCTGGCTCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGCTTCTGATTTGTCGGCTGACACAGGATCGGTCTTTCTTCAAGAAGTCAGGGTTGCTT TTAGATTTCATTATGTCGTATCCGGCCACGGGCGTGTTTTCCGGGGGCTTCTCACCCAGC GCTTCGGTCGCGGCCTTCAGCTGCTCCTTCAACCTGCCGATGTCACAGTCAGCCTTCGCC CTCACGATGCTCAGCTCCGTGTAGATGTCTTTGTACTTGTCACTGGCGTACTTCTTGTCC CGCAATGCCGTCTGCAGCTCGTCCTTGAGGGAGCTGATCTCCTGCTTTAGGTACTGAATT TCTGATTCCTTCACCCGCAACAACACCTCTAACTCGTAGGCGTCCTTGCCCTGCGCGAGA GGCGAGCCGGCGGCCTCGCCACTGGTGTCCCCAGTCAGCAGTGTCCGCAGCCGTGAGATC TCTGCAGCCAGGCGGTTGTTCAGCTCCTGGTTGTGGGCGTTGAGCTCCTGGTTCTCGCGC TGGCACTGCCGCAGGGCCTGCCGCTCGGCCTCCAGCGCCTGGGCCAGGTGGGCGTTCTCC AGGCACTTCTGCGAGTACTGCTCAGACAGCACCTCCAGCTCCCGCTGCACCGACTGCAGC TCCTCCAGGTATTGCCGCCGCAGGGCCTCGATGTCAGAGTTGACGCTGCTGATCTGGGAG CGCTGGCTCTTCTCCAGCTCCCGCTCCATCTCCTCGCGGTGCGCGTTCTTCATGGCTTCG ATGGCTGAGATGGTGGCCGCCGTCTCCTCCGCCAGCAGGCGGTCTTTCTCCTCCCGCAGC TTCTCCAGTTCCCGCTGGTGCTGCCTCTGAAGGTCCTCGATCTTCTTCTGATGTGTCTCT TCCATGGCGGCAAACCCGCGCTCACACGTGGCCTGCAGCACGTAGCCCTCCCGGGCGCTC TGCTCCCGGCCCAGAGCCACCCTCAGCTGGTCCTGCAGCAGCCGGTTCTGCTCCAGAAGG TCCGAGGCCTCCTTCTGGCTCTGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 79-240, gnl|bosTau2|chr19 (27359346-27359507) | |
| 79-240, gnl|Hg17|chr17 (17021449-17021288) | |
| 79-240, gnl|Mm7|chr11 (59851589-59851428) | |
| 446-606, gnl|bosTau2|chr19 (27361138-27361298) | |
| 446-606, gnl|canFam2|chr5 (45233547-45233356) | |
| 446-606, gnl|danRer3|chr24 (33050637-33050811) | |
| 446-606, gnl|dasNov1|scaffold_30008 (9421-9606) | |
| 446-606, gnl|echTel1|scaffold_129861 (1022-831) | |
| 446-606, gnl|fr1|chrUn (22011401-22011572) | |
| 446-606, gnl|galGal2|chr14 (6818524-6818713) | |
| 446-606, gnl|hg17|chr17 (17017931-17018122) | |
| 446-606, gnl|Hg17|chr17 (17018115-17017955) | |
| 446-606, gnl|loxAfr1|scaffold_10528 (29647-29457) | |
| 446-606, gnl|mm7|chr11 (59848248-59848440) | |
| 446-606, gnl|Mm7|chr11 (59848433-59848273) | |
| 446-606, gnl|monDom2|scaffold_193 (80628-80803) | |
| 446-606, gnl|oryCun1|scaffold_182542 (4100-3930) | |
| 446-606, gnl|panTro1|chr19 (17417784-17417975) | |
| 446-606, gnl|rheMac2|chr16 (17071541-17071732) | |
| 446-606, gnl|rn3|chr10 (46094672-46094862) | |
| 446-606, gnl|tetNig1|chr2 (4946607-4946444) | |
| 446-606, gnl|xenTro1|scaffold_142 (432018-432187) | |
| 725-875, gnl|bosTau2|chr19 (27362851-27363001) | |
| 725-875, gnl|canFam2|chr5 (45235106-45235200) | |
| 725-875, gnl|danRer3|chr12 (265878-265784) | |
| 725-875, gnl|dasNov1|scaffold_3422 (44120-44022) | |
| 725-875, gnl|echTel1|scaffold_292643 (2530-2442) | |
| 725-875, gnl|fr1|chrUn (22011046-22010952) | |
| 725-875, gnl|galGal2|chr14 (6817223-6817129) | |
| 725-875, gnl|Hg17|chr17 (17015904-17015754) | |
| 725-875, gnl|hg17|chr3 (44595221-44595315) | |
| 725-875, gnl|mm7|chr11 (59846070-59845979) | |
| 725-875, gnl|Mm7|chr11 (59846072-59845922) | |
| 725-875, gnl|monDom2|scaffold_125 (2346118-2346014) | |
| 725-875, gnl|oryCun1|scaffold_182542 (7094-7185) | |
| 725-875, gnl|panTro1|chr2 (45883972-45884066) | |
| 725-875, gnl|rheMac2|chr16 (17069504-17069413) | |
| 725-875, gnl|rn3|chr10 (46092658-46092567) | |
| 725-875, gnl|tetNig1|chr2 (4946911-4947005) | |
| 725-875, gnl|xenTro1|scaffold_142 (430551-430457) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-240, gnl|bosTau2|chr19 (27359346-27359507) | |
| 79-240, gnl|Hg17|chr17 (17021449-17021288) | |
| 79-240, gnl|Mm7|chr11 (59851589-59851428) | |
| 446-606, gnl|bosTau2|chr19 (27361138-27361298) | |
| 446-606, gnl|canFam2|chr5 (45233547-45233356) | |
| 446-606, gnl|danRer3|chr24 (33050637-33050811) | |
| 446-606, gnl|dasNov1|scaffold_30008 (9421-9606) | |
| 446-606, gnl|echTel1|scaffold_129861 (1022-831) | |
| 446-606, gnl|fr1|chrUn (22011401-22011572) | |
| 446-606, gnl|galGal2|chr14 (6818524-6818713) | |
| 446-606, gnl|hg17|chr17 (17017931-17018122) | |
| 446-606, gnl|Hg17|chr17 (17018115-17017955) | |
| 446-606, gnl|loxAfr1|scaffold_10528 (29647-29457) | |
| 446-606, gnl|mm7|chr11 (59848248-59848440) | |
| 446-606, gnl|Mm7|chr11 (59848433-59848273) | |
| 446-606, gnl|monDom2|scaffold_193 (80628-80803) | |
| 446-606, gnl|oryCun1|scaffold_182542 (4100-3930) | |
| 446-606, gnl|panTro1|chr19 (17417784-17417975) | |
| 446-606, gnl|rheMac2|chr16 (17071541-17071732) | |
| 446-606, gnl|rn3|chr10 (46094672-46094862) | |
| 446-606, gnl|tetNig1|chr2 (4946607-4946444) | |
| 446-606, gnl|xenTro1|scaffold_142 (432018-432187) | |
| 725-875, gnl|bosTau2|chr19 (27362851-27363001) | |
| 725-875, gnl|canFam2|chr5 (45235106-45235200) | |
| 725-875, gnl|danRer3|chr12 (265878-265784) | |
| 725-875, gnl|dasNov1|scaffold_3422 (44120-44022) | |
| 725-875, gnl|echTel1|scaffold_292643 (2530-2442) | |
| 725-875, gnl|fr1|chrUn (22011046-22010952) | |
| 725-875, gnl|galGal2|chr14 (6817223-6817129) | |
| 725-875, gnl|Hg17|chr17 (17015904-17015754) | |
| 725-875, gnl|hg17|chr3 (44595221-44595315) | |
| 725-875, gnl|mm7|chr11 (59846070-59845979) | |
| 725-875, gnl|Mm7|chr11 (59846072-59845922) | |
| 725-875, gnl|monDom2|scaffold_125 (2346118-2346014) | |
| 725-875, gnl|oryCun1|scaffold_182542 (7094-7185) | |
| 725-875, gnl|panTro1|chr2 (45883972-45884066) | |
| 725-875, gnl|rheMac2|chr16 (17069504-17069413) | |
| 725-875, gnl|rn3|chr10 (46092658-46092567) | |
| 725-875, gnl|tetNig1|chr2 (4946911-4947005) | |
| 725-875, gnl|xenTro1|scaffold_142 (430551-430457) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| clu (0.358938) | |
| ese (0.253004) |