Non-Coding RNA Search

Ss1.1-Utr2-C0001800_N09.5

Sequence:


               
               AGAGCGGGAGTTCTATAACGCCCGGCGCCGGGAGCACCGCCAGAAGAATGAAGCCAGTGC
TGGTAACACATCTCAGGACTCACTTGCAAGGCCTGGTGGCAACAACAAAGACAAAGAGGT
GCCTGCTAAAGAAAAGCCAAGTTTTGAACTTTCTGGGGCGCTTCTGGAGGACACCAACAC
CTTCCGGGGTGTAGTCATTAAATATAGTGAGCCCCCAGAAGCACGTATCCCCAAAAAGCG
GTGGCGCCTCTACCCCTTTAAAAACGATGAGGTGCTTCCTGTGATGTACATCCACCGGCA
GAGCGCTTACCTCCTGGGCCGACATCGCCGCATCGCAGACATTCCCATCGATCATCCCTC
TTGTTCAAAGCAGCACGCCGTCTTTCAGTACCGGCTTGTGGAATATACCCGTGCTGATGG
GACAGTTGGCCGCAGGGTGAAGCCCTACATCATTGACCTCGGCTCAGGCAATGGAACGTT
CCTGAACAACAAGCGAATTGAGCCTCAGAGATACTACGAACTGAAGGAAAAGGATGTCCT
TAAATTCGGGTTCAGCAGCAGAGAGTATGTCCTGCTTCATGAGTCCTCTGACACATCTGA
AGTAGACAGGAAAGAAGATGAGGATGACGAGGAGGAGGAGGAAGTGTCTGACAGCTAGCA
AACTAAGAAACAACCCAAACTCCCGAGAGACCTGTTCTTTCTTCAGAGGCTTTGGGATTG
ACTCTTAAGGGCACTGCCGTGCGCTCTGTAATGCCTCTTATTGCCTTAAGTCTTTCCTCT
GTTGCTGACCAGCTTACGTTAGTTACAGTTTAAGAAAACTGATTTCTGTTTGGTTGAACT
CTTTTCTGTGGCACATCAACCGCATGCCTGTGGGCGTTTGTTTTCCGAACAGTCTCACCA
ACACATCCCGTTTTAGTAGAAACATTGTGGCTTTAGTTGGTGCTTTCAGAACTGCTGTCT
AGGAAACTATAAACCCTTCCTCAAAGGGGAACTGTGGCTTGTTCTCTTTGTACAGTTACT
TTATTTATATAGTTGTTAAGCTGTGTGGACTGGGTTGGTTTTTGTTTGGGGGGCAAACCC
CTGAACAGAGAATCTTACTAAGCTTTGGTTATTACCAAAACAGCCTCTAGACTATATACC
AAAGCTTTGACCTGGTTGAGCTCTTGAGTCATGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCGGGAGTTCTATAACGCCCGGCGCCGGGAGCACCGCCAGAAGAATGAAGCCAGTGC
TGGTAACACATCTCAGGACTCACTTGCAAGGCCTGGTGGCAACAACAAAGACAAAGAGGT
GCCTGCTAAAGAAAAGCCAAGTTTTGAACTTTCTGGGGCGCTTCTGGAGGACACCAACAC
CTTCCGGGGTGTAGTCATTAAATATAGTGAGCCCCCAGAAGCACGTATCCCCAAAAAGCG
GTGGCGCCTCTACCCCTTTAAAAACGATGAGGTGCTTCCTGTGATGTACATCCACCGGCA
GAGCGCTTACCTCCTGGGCCGACATCGCCGCATCGCAGACATTCCCATCGATCATCCCTC
TTGTTCAAAGCAGCACGCCGTCTTTCAGTACCGGCTTGTGGAATATACCCGTGCTGATGG
GACAGTTGGCCGCAGGGTGAAGCCCTACATCATTGACCTCGGCTCAGGCAATGGAACGTT
CCTGAACAACAAGCGAATTGAGCCTCAGAGATACTACGAACTGAAGGAAAAGGATGTCCT
TAAATTCGGGTTCAGCAGCAGAGAGTATGTCCTGCTTCATGAGTCCTCTGACACATCTGA
AGTAGACAGGAAAGAAGATGAGGATGACGAGGAGGAGGAGGAAGTGTCTGACAGCTAGCA
AACTAAGAAACAACCCAAACTCCCGAGAGACCTGTTCTTTCTTCAGAGGCTTTGGGATTG
ACTCTTAAGGGCACTGCCGTGCGCTCTGTAATGCCTCTTATTGCCTTAAGTCTTTCCTCT
GTTGCTGACCAGCTTACGTTAGTTACAGTTTAAGAAAACTGATTTCTGTTTGGTTGAACT
CTTTTCTGTGGCACATCAACCGCATGCCTGTGGGCGTTTGTTTTCCGAACAGTCTCACCA
ACACATCCCGTTTTAGTAGAAACATTGTGGCTTTAGTTGGTGCTTTCAGAACTGCTGTCT
AGGAAACTATAAACCCTTCCTCAAAGGGGAACTGTGGCTTGTTCTCTTTGTACAGTTACT
TTATTTATATAGTTGTTAAGCTGTGTGGACTGGGTTGGTTTTTGTTTGGGGGGCAAACCC
CTGAACAGAGAATCTTACTAAGCTTTGGTTATTACCAAAACAGCCTCTAGACTATATACC
AAAGCTTTGACCTGGTTGAGCTCTTGAGTCATGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61856898|ref|XP_604303.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856898|ref|XP_604303.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               712-812, - strand, RNAz p=0.612694
               

               
               903-1176, - strand, RNAz p=0.996016
               

               
               1006-1176, + strand, RNAz p=0.884306

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               712-812, - strand, RNAz p=0.612694
               

               
               903-1176, - strand, RNAz p=0.996016
               

               
               1006-1176, + strand, RNAz p=0.884306

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024700, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024700, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               393-1176, gnl|bosTau2|chr3 (75765100-75765875)
               

               
               393-1176, gnl|canFam2|chr15 (7943821-7943309)
               

               
               393-1176, gnl|dasNov1|scaffold_24679 (8810-9342)
               

               
               393-1176, gnl|echTel1|scaffold_212262 (270-770)
               

               
               393-1176, gnl|hg17|chr1 (37671886-37672418)
               

               
               393-1176, gnl|Hg17|chr1 (37672707-37671917)
               

               
               393-1176, gnl|loxAfr1|scaffold_19565 (15867-15345)
               

               
               393-1176, gnl|mm7|chr4 (124518070-124517606)
               

               
               393-1176, gnl|Mm7|chr4 (124517312-124518040)
               

               
               393-1176, gnl|monDom2|scaffold_43 (12124990-12124443)
               

               
               393-1176, gnl|oryCun1|scaffold_201047 (54348-54830)
               

               
               393-1176, gnl|panTro1|chr1 (38513293-38513805)
               

               
               393-1176, gnl|rheMac2|chr1 (40400120-40400652)
               

               
               393-1176, gnl|rn3|chr5 (144426369-144425898)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               393-1176, gnl|bosTau2|chr3 (75765100-75765875)
               

               
               393-1176, gnl|canFam2|chr15 (7943821-7943309)
               

               
               393-1176, gnl|dasNov1|scaffold_24679 (8810-9342)
               

               
               393-1176, gnl|echTel1|scaffold_212262 (270-770)
               

               
               393-1176, gnl|hg17|chr1 (37671886-37672418)
               

               
               393-1176, gnl|Hg17|chr1 (37672707-37671917)
               

               
               393-1176, gnl|loxAfr1|scaffold_19565 (15867-15345)
               

               
               393-1176, gnl|mm7|chr4 (124518070-124517606)
               

               
               393-1176, gnl|Mm7|chr4 (124517312-124518040)
               

               
               393-1176, gnl|monDom2|scaffold_43 (12124990-12124443)
               

               
               393-1176, gnl|oryCun1|scaffold_201047 (54348-54830)
               

               
               393-1176, gnl|panTro1|chr1 (38513293-38513805)
               

               
               393-1176, gnl|rheMac2|chr1 (40400120-40400652)
               

               
               393-1176, gnl|rn3|chr5 (144426369-144425898)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               spl (0.143184)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               spl (0.143184)

	712-812, - strand, RNAz p=0.612694
	903-1176, - strand, RNAz p=0.996016
	1006-1176, + strand, RNAz p=0.884306

	393-1176, gnl\|bosTau2\|chr3 (75765100-75765875)
	393-1176, gnl\|canFam2\|chr15 (7943821-7943309)
	393-1176, gnl\|dasNov1\|scaffold_24679 (8810-9342)
	393-1176, gnl\|echTel1\|scaffold_212262 (270-770)
	393-1176, gnl\|hg17\|chr1 (37671886-37672418)
	393-1176, gnl\|Hg17\|chr1 (37672707-37671917)
	393-1176, gnl\|loxAfr1\|scaffold_19565 (15867-15345)
	393-1176, gnl\|mm7\|chr4 (124518070-124517606)
	393-1176, gnl\|Mm7\|chr4 (124517312-124518040)
	393-1176, gnl\|monDom2\|scaffold_43 (12124990-12124443)
	393-1176, gnl\|oryCun1\|scaffold_201047 (54348-54830)
	393-1176, gnl\|panTro1\|chr1 (38513293-38513805)
	393-1176, gnl\|rheMac2\|chr1 (40400120-40400652)
	393-1176, gnl\|rn3\|chr5 (144426369-144425898)