Non-Coding RNA Search

Ss1.1-Utr2-C0001800_O13.5

Sequence:


               
               CTCACACCTTTTAGATCACTAACCCCTGCTCCCCCAGCCTGCCCTCACTTCCACCAAAGG
TTTTCCCCAGGTGGGGAGAGCGTTCACGTTAGAGGAGACTTGTTTGGGATGCTCCTTTCA
GGGCCAGGAGGGACCCTGGTCACGGGCATCTACATGGTTAGCAATCCCACCCCCACCCGC
CACCTACCCACCAAGGAACATCAGGGCTTAGTCACTGACAGAGCCCTTCTTCTGATCCCA
AACCCCCAATGCTTCTTGGGGATTGAGGACTAGAGGACATGTAGGAAGCCAACCTAAGCA
GGTTCTTCATGCCCTTTCCTCCGTGGCTGAGGCTTACCTGGCCTTGTTCACACACTTACA
GAACCCAAGAAGGAGGTTTCCACCTGAAAGGCTCACAGCTGGCAGCCCCGACTCCCCCAC
GCGCGCATGTGCAATCCTTGCCTTTGGGGAAGCTCATGTCCTGGGCCCTGAGAGCCCACG
CCCCTGAGCAGTGCTGCCCCAGCAGCTTTTCCCTATGCTGCAGGCTTCCCCCCATCGGGG
AGGCAATGGGACCAAGATCCACGTTGGCCCTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACACCTTTTAGATCACTAACCCCTGCTCCCCCAGCCTGCCCTCACTTCCACCAAAGG
TTTTCCCCAGGTGGGGAGAGCGTTCACGTTAGAGGAGACTTGTTTGGGATGCTCCTTTCA
GGGCCAGGAGGGACCCTGGTCACGGGCATCTACATGGTTAGCAATCCCACCCCCACCCGC
CACCTACCCACCAAGGAACATCAGGGCTTAGTCACTGACAGAGCCCTTCTTCTGATCCCA
AACCCCCAATGCTTCTTGGGGATTGAGGACTAGAGGACATGTAGGAAGCCAACCTAAGCA
GGTTCTTCATGCCCTTTCCTCCGTGGCTGAGGCTTACCTGGCCTTGTTCACACACTTACA
GAACCCAAGAAGGAGGTTTCCACCTGAAAGGCTCACAGCTGGCAGCCCCGACTCCCCCAC
GCGCGCATGTGCAATCCTTGCCTTTGGGGAAGCTCATGTCCTGGGCCCTGAGAGCCCACG
CCCCTGAGCAGTGCTGCCCCAGCAGCTTTTCCCTATGCTGCAGGCTTCCCCCCATCGGGG
AGGCAATGGGACCAAGATCCACGTTGGCCCTTTTGT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               29-139, - strand, RNAz p=0.96011
               

               
               221-336, - strand, RNAz p=0.662204
               

               
               482-576, - strand, RNAz p=0.952288

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-139, - strand, RNAz p=0.96011
               

               
               221-336, - strand, RNAz p=0.662204
               

               
               482-576, - strand, RNAz p=0.952288

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of AK124781, -
               

               
               5' of AK124781, -
               

               
               5' of AK124781, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK124781, -
               

               
               5' of AK124781, -
               

               
               5' of AK124781, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-576, gnl|bosTau2|chr11 (3506941-3506340)
               

               
               1-576, gnl|canFam2|chr10 (48286213-48285426)
               

               
               1-576, gnl|echTel1|scaffold_226607 (1099-358)
               

               
               1-576, gnl|hg17|chr2 (96897898-96898687)
               

               
               1-576, gnl|Hg17|chr2 (96897967-96898586)
               

               
               1-576, gnl|mm7|chr1 (36748683-36749354)
               

               
               1-576, gnl|monDom2|scaffold_1 (154446653-154447421)
               

               
               1-576, gnl|oryCun1|scaffold_189423 (7684-6928)
               

               
               1-576, gnl|panTro1|chr12 (99918455-99919242)
               

               
               1-576, gnl|rheMac2|chr13 (97232630-97233418)
               

               
               1-576, gnl|rn3|chr9 (35450262-35451053)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr11 (3506941-3506340)
               

               
               1-576, gnl|canFam2|chr10 (48286213-48285426)
               

               
               1-576, gnl|echTel1|scaffold_226607 (1099-358)
               

               
               1-576, gnl|hg17|chr2 (96897898-96898687)
               

               
               1-576, gnl|Hg17|chr2 (96897967-96898586)
               

               
               1-576, gnl|mm7|chr1 (36748683-36749354)
               

               
               1-576, gnl|monDom2|scaffold_1 (154446653-154447421)
               

               
               1-576, gnl|oryCun1|scaffold_189423 (7684-6928)
               

               
               1-576, gnl|panTro1|chr12 (99918455-99919242)
               

               
               1-576, gnl|rheMac2|chr13 (97232630-97233418)
               

               
               1-576, gnl|rn3|chr9 (35450262-35451053)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (0.175593)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	29-139, - strand, RNAz p=0.96011
	221-336, - strand, RNAz p=0.662204
	482-576, - strand, RNAz p=0.952288

	1-576, gnl\|bosTau2\|chr11 (3506941-3506340)
	1-576, gnl\|canFam2\|chr10 (48286213-48285426)
	1-576, gnl\|echTel1\|scaffold_226607 (1099-358)
	1-576, gnl\|hg17\|chr2 (96897898-96898687)
	1-576, gnl\|Hg17\|chr2 (96897967-96898586)
	1-576, gnl\|mm7\|chr1 (36748683-36749354)
	1-576, gnl\|monDom2\|scaffold_1 (154446653-154447421)
	1-576, gnl\|oryCun1\|scaffold_189423 (7684-6928)
	1-576, gnl\|panTro1\|chr12 (99918455-99919242)
	1-576, gnl\|rheMac2\|chr13 (97232630-97233418)
	1-576, gnl\|rn3\|chr9 (35450262-35451053)