Non-Coding RNA Search

Ss1.1-Utr2-C0001801_G11.5.5

Sequence:


               
               ATCCAGCCCCGGAGCATATAAACAGAGGAGTTGCAGGTCTCCCCCAGTCCCAGCAAGTTT
TGCAACAGACCATGGCAGTCCTTGGTTCCCCGCTGCTGCCTCTGAGGCTGTTTCTGTGCT
TCGGACTGCTGTTTTTTTCTGCCAGCTGTACTGATCACCCTGACCAGTGCATGATCTTCA
ACAAGGTCACTTCCATCCATAACTCAAGAATCCAGGTCAACCCAAAGGTCTATGAAAGCA
ACACAGTCTACACAGTGTCAGTTCCTGTGAATAACACGATTAGCTCTGTGGTCATGAAAG
CAGTCGACATGCACCACTCAGTCATTGGCTTCTGGCAAAAAGCAGACATGAATTGCACCA
GCAGCGCCTTGTACCACGTGAAGAGCCCACATGAACATGTCTTAGAGGCAAAATGGCTCT
CTCCTGCCTCCACCAACATAAACACCGTCGAGCTACAAGTCTTCGTTGTTGATTTCCACA
AGGAGGCTACAGCTTCTGTTCTGAAACTGGAAAAAAGTGGGACAAGCCCAGCCTTGATCA
CCAAGCTCATCACCACGAAGTCAAATACAGTCACAACCACCAAACCAACTGTCATCACAA
CCCACACCACACACAAAAACTCAGCGAACAGAGTCTTCCGCAGCCCCGTGAGAGATGCCA
TTCAGATCCTGCTCGCCTTTCTCACCAGCAAACTCCTCTTCTAGAAGGAAGCTGGGGGAG
CAATCGCTCCTGCCTCCACTGAATCCTTCCATGCTCAGTCCCGAGCCAGGGCTCTGACCT
GTGTGAATGAAGGTCTTCCGTTCTCAGAGGCACAGCAATCCTGCTGCTGCTTCTGATCCA
GACTCGGTGGAGGGTAGTCCTCTCACTGCTATTTAACTGGATCTCTTAGGACACAGATTA
GGCTTTTTTGTAACTACTCAGACCTCATCTGGGTGTAACCTGGAATTCTGGCTTCCTGTT
TAACATCTTGACAACCAACACCACAGCCAATCTAAACTTTTGTTTAGATGCAACACGAGT
AGTTATTTGAAGGGCAGGAAAATAAGAATGTACCATGTCTGAGTCCCCAGGGGTAGGGAA
CGATGATGGTGTAAAGGCATTATTTTCTATGTCATACCAAATAAACTACACTTTGAACAA
GAATAATGAATGTGTTAAATTCAGATGTCCTTAACAAGTGATTAACTTAAAATACCGAAA
ATGTCATCTAATTTGATTCGTTTATGTGGGCATTAAAAAAAAAATCAATGGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAGCCCCGGAGCATATAAACAGAGGAGTTGCAGGTCTCCCCCAGTCCCAGCAAGTTT
TGCAACAGACCATGGCAGTCCTTGGTTCCCCGCTGCTGCCTCTGAGGCTGTTTCTGTGCT
TCGGACTGCTGTTTTTTTCTGCCAGCTGTACTGATCACCCTGACCAGTGCATGATCTTCA
ACAAGGTCACTTCCATCCATAACTCAAGAATCCAGGTCAACCCAAAGGTCTATGAAAGCA
ACACAGTCTACACAGTGTCAGTTCCTGTGAATAACACGATTAGCTCTGTGGTCATGAAAG
CAGTCGACATGCACCACTCAGTCATTGGCTTCTGGCAAAAAGCAGACATGAATTGCACCA
GCAGCGCCTTGTACCACGTGAAGAGCCCACATGAACATGTCTTAGAGGCAAAATGGCTCT
CTCCTGCCTCCACCAACATAAACACCGTCGAGCTACAAGTCTTCGTTGTTGATTTCCACA
AGGAGGCTACAGCTTCTGTTCTGAAACTGGAAAAAAGTGGGACAAGCCCAGCCTTGATCA
CCAAGCTCATCACCACGAAGTCAAATACAGTCACAACCACCAAACCAACTGTCATCACAA
CCCACACCACACACAAAAACTCAGCGAACAGAGTCTTCCGCAGCCCCGTGAGAGATGCCA
TTCAGATCCTGCTCGCCTTTCTCACCAGCAAACTCCTCTTCTAGAAGGAAGCTGGGGGAG
CAATCGCTCCTGCCTCCACTGAATCCTTCCATGCTCAGTCCCGAGCCAGGGCTCTGACCT
GTGTGAATGAAGGTCTTCCGTTCTCAGAGGCACAGCAATCCTGCTGCTGCTTCTGATCCA
GACTCGGTGGAGGGTAGTCCTCTCACTGCTATTTAACTGGATCTCTTAGGACACAGATTA
GGCTTTTTTGTAACTACTCAGACCTCATCTGGGTGTAACCTGGAATTCTGGCTTCCTGTT
TAACATCTTGACAACCAACACCACAGCCAATCTAAACTTTTGTTTAGATGCAACACGAGT
AGTTATTTGAAGGGCAGGAAAATAAGAATGTACCATGTCTGAGTCCCCAGGGGTAGGGAA
CGATGATGGTGTAAAGGCATTATTTTCTATGTCATACCAAATAAACTACACTTTGAACAA
GAATAATGAATGTGTTAAATTCAGATGTCCTTAACAAGTGATTAACTTAAAATACCGAAA
ATGTCATCTAATTTGATTCGTTTATGTGGGCATTAAAAAAAAAATCAATGGAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YQE5_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YQE5_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               632-749, + strand, RNAz p=0.687503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               632-749, + strand, RNAz p=0.687503

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-262, gnl|bosTau2|chr15 (8703158-8703429)
               

               
               1-262, gnl|Hg17|chr11 (111636599-111636333)
               

               
               1-262, gnl|Mm7|chr9 (50473061-50473334)
               


               
               605-840, gnl|bosTau2|chr15 (8714528-8714772)
               

               
               605-840, gnl|canFam2|chr5 (23904306-23903939)
               

               
               605-840, gnl|echTel1|scaffold_300713 (140916-141277)
               

               
               605-840, gnl|hg17|chr11 (111624487-111624823)
               

               
               605-840, gnl|Hg17|chr11 (111624827-111624590)
               

               
               605-840, gnl|loxAfr1|scaffold_24853 (35161-34805)
               

               
               605-840, gnl|mm7|chr9 (50483351-50483038)
               

               
               605-840, gnl|Mm7|chr9 (50483031-50483286)
               

               
               605-840, gnl|monDom2|scaffold_2 (129458168-129457785)
               

               
               605-840, gnl|oryCun1|scaffold_207300 (44146-43812)
               

               
               605-840, gnl|panTro1|chr9 (113633753-113634089)
               

               
               605-840, gnl|rheMac2|chr14 (110717352-110717687)
               

               
               605-840, gnl|rn3|chr8 (53882202-53881909)
               


               
               920-1251, gnl|bosTau2|chr15 (8714795-8715111)
               

               
               920-1251, gnl|Hg17|chr11 (111624535-111624003)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr15 (8703158-8703429)
               

               
               1-262, gnl|Hg17|chr11 (111636599-111636333)
               

               
               1-262, gnl|Mm7|chr9 (50473061-50473334)
               


               
               605-840, gnl|bosTau2|chr15 (8714528-8714772)
               

               
               605-840, gnl|canFam2|chr5 (23904306-23903939)
               

               
               605-840, gnl|echTel1|scaffold_300713 (140916-141277)
               

               
               605-840, gnl|hg17|chr11 (111624487-111624823)
               

               
               605-840, gnl|Hg17|chr11 (111624827-111624590)
               

               
               605-840, gnl|loxAfr1|scaffold_24853 (35161-34805)
               

               
               605-840, gnl|mm7|chr9 (50483351-50483038)
               

               
               605-840, gnl|Mm7|chr9 (50483031-50483286)
               

               
               605-840, gnl|monDom2|scaffold_2 (129458168-129457785)
               

               
               605-840, gnl|oryCun1|scaffold_207300 (44146-43812)
               

               
               605-840, gnl|panTro1|chr9 (113633753-113634089)
               

               
               605-840, gnl|rheMac2|chr14 (110717352-110717687)
               

               
               605-840, gnl|rn3|chr8 (53882202-53881909)
               


               
               920-1251, gnl|bosTau2|chr15 (8714795-8715111)
               

               
               920-1251, gnl|Hg17|chr11 (111624535-111624003)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ute (11.5523)
               

               
               eep (0.245128)
               

               
               nep (0.183925)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (11.5523)
               

               
               eep (0.245128)
               

               
               nep (0.183925)

	1-262, gnl\|bosTau2\|chr15 (8703158-8703429)
	1-262, gnl\|Hg17\|chr11 (111636599-111636333)
	1-262, gnl\|Mm7\|chr9 (50473061-50473334)

	605-840, gnl\|bosTau2\|chr15 (8714528-8714772)
	605-840, gnl\|canFam2\|chr5 (23904306-23903939)
	605-840, gnl\|echTel1\|scaffold_300713 (140916-141277)
	605-840, gnl\|hg17\|chr11 (111624487-111624823)
	605-840, gnl\|Hg17\|chr11 (111624827-111624590)
	605-840, gnl\|loxAfr1\|scaffold_24853 (35161-34805)
	605-840, gnl\|mm7\|chr9 (50483351-50483038)
	605-840, gnl\|Mm7\|chr9 (50483031-50483286)
	605-840, gnl\|monDom2\|scaffold_2 (129458168-129457785)
	605-840, gnl\|oryCun1\|scaffold_207300 (44146-43812)
	605-840, gnl\|panTro1\|chr9 (113633753-113634089)
	605-840, gnl\|rheMac2\|chr14 (110717352-110717687)
	605-840, gnl\|rn3\|chr8 (53882202-53881909)

	920-1251, gnl\|bosTau2\|chr15 (8714795-8715111)
	920-1251, gnl\|Hg17\|chr11 (111624535-111624003)