Non-Coding RNA Search

Ss1.1-Utr2-C0001802_H06.5

Sequence:


               
               AAGGGTTCTGACGACCCAGGAGACTCACATCTTCAGTGGCAGCTCAACCTCCTTACACAC
ATAGAGAACGTGCAGAATGAAGTCACCAGCAGGATGGACCTGATAGAGAAAGAAGTTGAT
GTTCTGGAAAGCTGGCTTGATTTCACAGGGGAGCTGGAGCCACCGGATCCTCTCGCAAGG
CTGCCCCAACTGAAACGCCACATCAAACAGCTCCTAATTGACATGGGCAAAGTACAACAG
ATAGCACCTCTCTGCTCTGTATGACAGCAGCGAACACCTGACACAGAGAGCGTGGCTCTG
TTCAGTCAGCTGATCTTTATTCCCACATGGCTGCTAAGTGGATAGATGAGAAGCTTAGTG
GTCTTTGGTCATTTCCTGACTTGTGACATCAATAGGATGGCACCTTGGAACGGAAAATGA
ACATCTTTATCAAGGAAGTTGATAGGAAATTTATGAGCAGGATCCAGATGCTAATATGTC
ACATGCCAAGGATCAGTGGAGGTAGAATATAATCTATACTAAGGGAATCAAATTGGCAGG
ATTTTTGAGTAGTTGCTCGCATAAAACTCGAGATACCTGTAGAAAGAAATATGGTGTATT
TATATAGTTTTTAGTAAAAAGATCTATGTTTATAAACCAGCATTTGGCCAAAAACAAAAT
TGTAGGGGAAACTTAAATTCTGGAGAGTTCTCTGAGATTTCTGTGAGAACTGGCTTCTCT
GCAGTTGATCCAGCTGCACTGAGGTTTAGAGTATTAAAACTTTTATAGGATCATGAGCTG
TTTCTTAGGTGATAAATGTCCTTATCAGAAAACTGACAGCAGACGTCTCGCTTCTGAGGA
AAACAGTTGTGGAATTCTTGCTTCATTATGAATATCTTTAAAAACAAACAACGAATGGAT
TGGAATTTATTGCTGACATTATAAGGTCATTGTAAAAACAGAATGGCTCTCAGAAGGGTC
ACTGTGCCAAATGCTGATTGATGATACTGCTGGAAAGAGAATTTTAAACGCCGTGGGAAT
TCTCTCACCGGAGTCTTACACAAGCCCATCCGTGCATCAGAAATGCATCTATGTCACATA
CACTAGATATAGGATATATAGGGTCGAATTTCCATATTCAGGTTCCAACATACAGTTCGA
TCCTGGGTATGCTTGGTATTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGTTCTGACGACCCAGGAGACTCACATCTTCAGTGGCAGCTCAACCTCCTTACACAC
ATAGAGAACGTGCAGAATGAAGTCACCAGCAGGATGGACCTGATAGAGAAAGAAGTTGAT
GTTCTGGAAAGCTGGCTTGATTTCACAGGGGAGCTGGAGCCACCGGATCCTCTCGCAAGG
CTGCCCCAACTGAAACGCCACATCAAACAGCTCCTAATTGACATGGGCAAAGTACAACAG
ATAGCACCTCTCTGCTCTGTATGACAGCAGCGAACACCTGACACAGAGAGCGTGGCTCTG
TTCAGTCAGCTGATCTTTATTCCCACATGGCTGCTAAGTGGATAGATGAGAAGCTTAGTG
GTCTTTGGTCATTTCCTGACTTGTGACATCAATAGGATGGCACCTTGGAACGGAAAATGA
ACATCTTTATCAAGGAAGTTGATAGGAAATTTATGAGCAGGATCCAGATGCTAATATGTC
ACATGCCAAGGATCAGTGGAGGTAGAATATAATCTATACTAAGGGAATCAAATTGGCAGG
ATTTTTGAGTAGTTGCTCGCATAAAACTCGAGATACCTGTAGAAAGAAATATGGTGTATT
TATATAGTTTTTAGTAAAAAGATCTATGTTTATAAACCAGCATTTGGCCAAAAACAAAAT
TGTAGGGGAAACTTAAATTCTGGAGAGTTCTCTGAGATTTCTGTGAGAACTGGCTTCTCT
GCAGTTGATCCAGCTGCACTGAGGTTTAGAGTATTAAAACTTTTATAGGATCATGAGCTG
TTTCTTAGGTGATAAATGTCCTTATCAGAAAACTGACAGCAGACGTCTCGCTTCTGAGGA
AAACAGTTGTGGAATTCTTGCTTCATTATGAATATCTTTAAAAACAAACAACGAATGGAT
TGGAATTTATTGCTGACATTATAAGGTCATTGTAAAAACAGAATGGCTCTCAGAAGGGTC
ACTGTGCCAAATGCTGATTGATGATACTGCTGGAAAGAGAATTTTAAACGCCGTGGGAAT
TCTCTCACCGGAGTCTTACACAAGCCCATCCGTGCATCAGAAATGCATCTATGTCACATA
CACTAGATATAGGATATATAGGGTCGAATTTCCATATTCAGGTTCCAACATACAGTTCGA
TCCTGGGTATGCTTGGTATTTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33989658|gb|AAH56413.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33989658|gb|AAH56413.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1048-1164, + strand, RNAz p=0.999292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1048-1164, + strand, RNAz p=0.999292

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC050655, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC050655, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               116-1164, gnl|bosTau2|chr14 (4448257-4449302)
               

               
               116-1164, gnl|Hg17|chr8 (133927202-133928252)
               

               
               116-1164, gnl|Mm7|chr15 (66725348-66726374)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-1164, gnl|bosTau2|chr14 (4448257-4449302)
               

               
               116-1164, gnl|Hg17|chr8 (133927202-133928252)
               

               
               116-1164, gnl|Mm7|chr15 (66725348-66726374)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	116-1164, gnl\|bosTau2\|chr14 (4448257-4449302)
	116-1164, gnl\|Hg17\|chr8 (133927202-133928252)
	116-1164, gnl\|Mm7\|chr15 (66725348-66726374)