Non-Coding RNA Search

Ss1.1-Utr2-C0001803_A22.5

Sequence:


               
               ACAGATTTAGGGGAAAAGAATCTTTGGCGGAGAGCACAGGTACCCAGGCGCAAGGACAGC
GTTTTAGGTTACTATGAATAATGCTGCTGTGAGCATTCTGTGCACATTCACAAGAACGTC
TGTGTGGGTGAGTGGTGTTCCTAGCCACTCTTTCCTGTCTTTCTTCCGCCTTCCCATACA
CTCTGCCAGGCACAGTTCTGATCTCCCAGGATCTATGTAACTCAGGACTGTGCCCATCCC
CAGACGGAGGAGGAAAAATGACCTCGGTCAAGGAGGCAGTGACCTTCAAGGATGTGGCCG
TGGTCTTCACAGAGGAGGAGCTGGGGCTGCTGGACCTCACCCAGAGGAAGCTGTACCAGG
AAGTGATGCTGGAGAACTTCCGGAACCTGGTCTCAGTGGGAGGCAAGATCCAACATGAGA
CAGAGACTGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGATTTAGGGGAAAAGAATCTTTGGCGGAGAGCACAGGTACCCAGGCGCAAGGACAGC
GTTTTAGGTTACTATGAATAATGCTGCTGTGAGCATTCTGTGCACATTCACAAGAACGTC
TGTGTGGGTGAGTGGTGTTCCTAGCCACTCTTTCCTGTCTTTCTTCCGCCTTCCCATACA
CTCTGCCAGGCACAGTTCTGATCTCCCAGGATCTATGTAACTCAGGACTGTGCCCATCCC
CAGACGGAGGAGGAAAAATGACCTCGGTCAAGGAGGCAGTGACCTTCAAGGATGTGGCCG
TGGTCTTCACAGAGGAGGAGCTGGGGCTGCTGGACCTCACCCAGAGGAAGCTGTACCAGG
AAGTGATGCTGGAGAACTTCCGGAACCTGGTCTCAGTGGGAGGCAAGATCCAACATGAGA
CAGAGACTGTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R6K2_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R6K2_PONPY

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               268-400, gnl|bosTau2|chr10 (9012864-9012732)
               

               
               268-400, gnl|canFam2|chr24 (21662663-21662500)
               

               
               268-400, gnl|dasNov1|scaffold_26600 (41328-41182)
               

               
               268-400, gnl|echTel1|scaffold_299251 (17383-17545)
               

               
               268-400, gnl|galGal2|chrUn (125533105-125533263)
               

               
               268-400, gnl|Hg17|chr2 (95265097-95265229)
               

               
               268-400, gnl|hg17|chr20 (2421340-2421503)
               

               
               268-400, gnl|loxAfr1|scaffold_6431 (37494-37332)
               

               
               268-400, gnl|Mm7|chr2 (127321881-127321711)
               

               
               268-400, gnl|mm7|chr4 (146500427-146500290)
               

               
               268-400, gnl|monDom2|scaffold_43 (17867834-17867983)
               

               
               268-400, gnl|oryCun1|scaffold_172922 (10291-10448)
               

               
               268-400, gnl|panTro1|chr21_random (4040026-4039863)
               

               
               268-400, gnl|rheMac2|chr10 (35802098-35802261)
               

               
               268-400, gnl|rn3|chr1 (85178363-85178498)
               

               
               268-400, gnl|xenTro1|scaffold_106 (267371-267217)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               268-400, gnl|bosTau2|chr10 (9012864-9012732)
               

               
               268-400, gnl|canFam2|chr24 (21662663-21662500)
               

               
               268-400, gnl|dasNov1|scaffold_26600 (41328-41182)
               

               
               268-400, gnl|echTel1|scaffold_299251 (17383-17545)
               

               
               268-400, gnl|galGal2|chrUn (125533105-125533263)
               

               
               268-400, gnl|Hg17|chr2 (95265097-95265229)
               

               
               268-400, gnl|hg17|chr20 (2421340-2421503)
               

               
               268-400, gnl|loxAfr1|scaffold_6431 (37494-37332)
               

               
               268-400, gnl|Mm7|chr2 (127321881-127321711)
               

               
               268-400, gnl|mm7|chr4 (146500427-146500290)
               

               
               268-400, gnl|monDom2|scaffold_43 (17867834-17867983)
               

               
               268-400, gnl|oryCun1|scaffold_172922 (10291-10448)
               

               
               268-400, gnl|panTro1|chr21_random (4040026-4039863)
               

               
               268-400, gnl|rheMac2|chr10 (35802098-35802261)
               

               
               268-400, gnl|rn3|chr1 (85178363-85178498)
               

               
               268-400, gnl|xenTro1|scaffold_106 (267371-267217)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fli (0.405762)
               

               
               duo (0.172801)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.405762)
               

               
               duo (0.172801)
               

               
               nbm (0.0993246)

	268-400, gnl\|bosTau2\|chr10 (9012864-9012732)
	268-400, gnl\|canFam2\|chr24 (21662663-21662500)
	268-400, gnl\|dasNov1\|scaffold_26600 (41328-41182)
	268-400, gnl\|echTel1\|scaffold_299251 (17383-17545)
	268-400, gnl\|galGal2\|chrUn (125533105-125533263)
	268-400, gnl\|Hg17\|chr2 (95265097-95265229)
	268-400, gnl\|hg17\|chr20 (2421340-2421503)
	268-400, gnl\|loxAfr1\|scaffold_6431 (37494-37332)
	268-400, gnl\|Mm7\|chr2 (127321881-127321711)
	268-400, gnl\|mm7\|chr4 (146500427-146500290)
	268-400, gnl\|monDom2\|scaffold_43 (17867834-17867983)
	268-400, gnl\|oryCun1\|scaffold_172922 (10291-10448)
	268-400, gnl\|panTro1\|chr21_random (4040026-4039863)
	268-400, gnl\|rheMac2\|chr10 (35802098-35802261)
	268-400, gnl\|rn3\|chr1 (85178363-85178498)
	268-400, gnl\|xenTro1\|scaffold_106 (267371-267217)