Non-Coding RNA Search

Ss1.1-Utr2-C0001803_I22.5

Sequence:


               
               GGTGTTGAAACCACTTTAATATTTTAAGCTTAAATAATAATTAGAATAGTTTTATAACTA
ATAGTATCAACATTTAATTTTTAAAACAACCCTAAAAATAAGTATTGCAAACATTTTACA
GATGAGGATATAGAGGCACAGAATAAAGAGATGAAATCAGGATTTGCACCTAGGTAATCT
GTATTTTACTCATTACTCTATGTAAGTAATACTACAGTGTCCAAAGTCTCAGCTCACTAA
TGTTGTGAAACTGCATCTTATATCTGAAATTGTTGACTCTGAGGATGAGGTCTCCTCAGT
TCCTCATACTCTAGTAGAAAAGCAAATAGGTCAAAATGACTGATTGATCATTTCATGCTA
ATGATCAGGCATTGAAATGACTGGGTCTAAGAAGGAGGAAGAAGTTAAAGATCTCAGAGT
CAAAGAAAATGGGGTACCAGCCTTATCCATACCAGAAGAGCTAATGTTCCAGGGCAGTGT
GCCTGTAATGTGCCTGTAACATTGTTCTACTTCCTCTGGCTTCTGATGGTAATAATAGTT
TTATTATGTTTTAAAGGGTGATTTTCTTTCATTTGTCACATTGATTGCCAGCCAGGCATA
TTTCTTCCTCATGCATATAAGAGGAAAATCTGTCCTAAATGAGTGTTGGAAATATTTAAA
TACGTGGTGCATTGTTAAATATGACTGCATTATCAGTCTGGATTCAGAACTGGTTTCTGC
TTTCACTAAAATGCTGACAGTTTTATCCATCGATGCTCAAGAGAAATGCTATTTAGAAAA
GAGTTTGTTTTGTTTTTTTCTTCCTTCCTTTCTCTCTCTTTCTTGCCGCCCTGCAGCATA
TGGAGTCACAGGTGAAATCTGAGCCACAGTTTCCATCAGCTGCAGCAACAACTGAATCCT
TTACCCACTATGCCAGGCTAGGGATTGAACTTGTGACCTGGTGCTGCAGAGAGCCCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTTGAAACCACTTTAATATTTTAAGCTTAAATAATAATTAGAATAGTTTTATAACTA
ATAGTATCAACATTTAATTTTTAAAACAACCCTAAAAATAAGTATTGCAAACATTTTACA
GATGAGGATATAGAGGCACAGAATAAAGAGATGAAATCAGGATTTGCACCTAGGTAATCT
GTATTTTACTCATTACTCTATGTAAGTAATACTACAGTGTCCAAAGTCTCAGCTCACTAA
TGTTGTGAAACTGCATCTTATATCTGAAATTGTTGACTCTGAGGATGAGGTCTCCTCAGT
TCCTCATACTCTAGTAGAAAAGCAAATAGGTCAAAATGACTGATTGATCATTTCATGCTA
ATGATCAGGCATTGAAATGACTGGGTCTAAGAAGGAGGAAGAAGTTAAAGATCTCAGAGT
CAAAGAAAATGGGGTACCAGCCTTATCCATACCAGAAGAGCTAATGTTCCAGGGCAGTGT
GCCTGTAATGTGCCTGTAACATTGTTCTACTTCCTCTGGCTTCTGATGGTAATAATAGTT
TTATTATGTTTTAAAGGGTGATTTTCTTTCATTTGTCACATTGATTGCCAGCCAGGCATA
TTTCTTCCTCATGCATATAAGAGGAAAATCTGTCCTAAATGAGTGTTGGAAATATTTAAA
TACGTGGTGCATTGTTAAATATGACTGCATTATCAGTCTGGATTCAGAACTGGTTTCTGC
TTTCACTAAAATGCTGACAGTTTTATCCATCGATGCTCAAGAGAAATGCTATTTAGAAAA
GAGTTTGTTTTGTTTTTTTCTTCCTTCCTTTCTCTCTCTTTCTTGCCGCCCTGCAGCATA
TGGAGTCACAGGTGAAATCTGAGCCACAGTTTCCATCAGCTGCAGCAACAACTGAATCCT
TTACCCACTATGCCAGGCTAGGGATTGAACTTGTGACCTGGTGCTGCAGAGAGCCCATCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-435, - strand, RNAz p=0.976074

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-435, - strand, RNAz p=0.976074

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-542, gnl|bosTau2|chr10 (32639375-32639915)
               

               
               5-542, gnl|Hg17|chr15 (60148748-60149594)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-542, gnl|bosTau2|chr10 (32639375-32639915)
               

               
               5-542, gnl|Hg17|chr15 (60148748-60149594)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mga (0.160205)
               

               
               ute (0.132784)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               ute (0.132784)
               

               
               tra (0.123092)

	5-542, gnl\|bosTau2\|chr10 (32639375-32639915)
	5-542, gnl\|Hg17\|chr15 (60148748-60149594)